XLOC_029293 (gene) - C. hemisphaerica

Overview
NameXLOC_029293
Unique NameXLOC_029293
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_102:46993..51339+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_029293 ID=XLOC_029293|Name=XLOC_029293|organism=Clytia hemisphaerica|type=gene|length=4347bp|location=Sequence derived from alignment at scaffold_102:46993..51339+ (Clytia hemisphaerica)
cggtcgtggcttcttcgtacGGGTGAGAGTAGATCTTGTATTTTTCTATC
TTTGATCTGGAGTTTTCTGGAGTTTCTGAACCTTTAGGATGTTTCTAAGT
TGGACTTGGTCAATTTTAGAGTTCaactttgatattttgaaatttgccaa
aatgGGGTTCTGGGTGGGATTCGAAGagaagaactgaaaaaaaagaagaa
ctgaataatcgatattttttttcatttctgccAGTACCTTAGGTCGTACC
GCCAATCGTAACTCCCATGAACGTTTGGTGCTTTTAAAGCCGCCAAACTG
CAAACTCCTTTGGCCTGCTTTATGTTACTTGGTTAATTACAATACATCAA
ACTCATGGTGATCGACAATCAAATGAGTTCAAAGCCatcgaaaaagaaat
tctagaTACCGTAAGTATACCCCCTTCTTACAGAccaactggaaaaattg
gtcaaaatatcgtccccagtgaaaAATTATCCTCCAGTTTTTGTCCcgac
tgaaaataatcagataagcaaaatcgtaactgcaaaatattatgctattc
ttcccatccccactgaattttctgacttgaaaacaaaataattgaaatcc
ccagccataaaaaatatgggaatatcaattcccatcgagttttagtccgt
tatttctacccccactggctgaaaaaatcctaccgggtctgtgagaaggg
gctgTGTAAGTCCAGTAGAGATTTATGTTTTTTGAGTGAGTAACAAATTG
GCAGTATCGCTCTTTTTTTCACCACTTGTTTTGAGCTTGCTTTcgttaaa
attattttagtcaACAAATTGTTGCGACAATCCTAACCACTTGTAACTGA
CTTGAACCCAAGCAAGTGTAACCGAAGGCTAGAAGTGAATCTAGGCTGGC
ATTTGCAGCCACTCATTTTCTACTTTAACTTTGCGGCCCGCGTAGTTTTC
ACTAGACAATGTTATCGTTCGTTACAGTGATAGCAAAGGTGGGGAAATAT
GGTGGtttggcgttatggcggtattcGGAAAAAAAAGGCGGAAGAGTTTC
GAAgagactggcaaactctaccggctgtaaactcttttcggcaaaaaaaa
aattttcttcggcttttgGATTATTTCTTAGATAGCGATTTGCCTTAGAC
TAAAGCATAGTCTAGGTTTTCACATGAATATTAGATTTGAAGTGACATTT
AATTGCTTAATTGCCTGAACCCACCAATTCAGATCTTTTTCAATATCATT
ATGTTTCAGATGGGTTCAGCGTTGGACATTAATAATACGGCTACCAAAAT
CCAAATCATTAACATCAGGTAATTAGAAATTAGAAATCGGTTCGTAGAGG
TCTACCTCGGGCCTGTGAACTTCTACATCATCATAAtaataccgtaactt
ggtctaacgtcgacacccctcctctaattccgaccccctctttatcagct
gaaatttatagaaaggtcaaaacgaataatccttttttcaatcagtgatt
caaactttcatattattcctttctctaaagaagggtgtcggaattagacg
agggatgtcgatattagaccaacttactgtactaactagtcatagctttc
actaaatgcccacgcagaagatcatgtcatccacttataaagcttttact
gcttttaatgctttaaaaattaaagcattaaaaataatcaggaataattg
attgatttaattattgaatgattgattaattgattgaggcatatgcttga
aaaaaaattatattccataaACACAATaattgaagaattcatgcagcttg
ataatttgataaaatttgaggaaaagcttctcaaaaatatatttcaaaaa
ttatggtatcattagcttactggttttcacatctcctgtttgtttttttt
tctctcagtttctttcttacaacaatatatgtcatgactattattcacaa
tagaccttttctgataatgccgcagacatcttagattgtaggcaaaatat
atggcgatgaataaataaacaaggaaaccaatcagaaatagcttgctttt
ttcattggttgctatatttcaacaattctctagtgctactttgcctaata
aacaatagtcaagagaatactacgtataaaatttatcaaaaagttctgcg
ccatcttaaattgggtgaaatagaaaccaatcctagttgaGGCCCGGGCT
CCTCttgtgtacgctgtgattgcgCTTCTCAAGTAAAATcttatgttgtt
ggtcaaaagaaaaataaaggaatgccattgtgctCTATTCAGACTTACAG
Tcgagaaaatttgaaatgcgctttaattttttttcaagtgcatagtactt
tttcatgatgcaatcttttctccaagctgaaaggatcgaagccaataaga
tgatcgcagcgcagacaatgaagagacgtgcctccaggaagctagacttt
ttgagtttatagctatatacttttactttatTGTGTTTCCGTATGAATGT
CTGTGtatctagtctaaccaccgttaaatgccttcgggaaggtccctcct
aacttggaatgccagaattggagctatttcaccaaaccactggagcgtaa
gttatttagaaaaagttgaatatgggcatgtaaagttaaacgaatgttag
caaacttttttcaggtttttgaaatagattttagcgcactgaaaaaacag
tgaatacactctaagtgaggtaaatctattttgaagaccaaaagaaaaag
tttgtttacattgattgacattcaacattcattcaaccacttttggattc
aactttacatatggcAATACatacattcaacatttttgtactttgccggt
atcttgttttactaagttaagaaggactttctcgagttacgaccatatga
tggtatttaaagctcaagaagctctNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNATCAAATGTACgtacattaaaaaacttgagcaaat
ttctttaaagattccagaaaaagaattgaaatcattgctgaaatgaactt
ctgattaaattacagtatttagtattcagtttcatagaccagaaacaaaa
tttgacatacaaaacactttttccagtcaatgaatcagctcatcatcata
accagtctaccattttgtttgttttgatttgcacaagtaatattgtaatt
cgtgtgtatatcatacactgttataatttgcatttataacactcgcttca
gcttttcaaaggtaaattaaaactaataaattgtaatatgtaacaatggt
aatagcatacaacgtaatatgaaaatatgcatactactgtcccgaaaaaa
aaccgaacatttacggaagagactaactacggggatgcttgcgcgacaaa
acacaAACAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNcaacaaaaacaacaaaatttcgagat
tccagtccaatatctatgcgtgaaactatgagtgcctcctcgtcgctgcg
ctcctgcgggggcaataataataataagtcATTCTTCTTCGGATGCCATT
TCTAGCTGTAAGATGAGAGTGAGTATACCACCAAAAGGTTTCTCTTTCAA
GcaaattttctcgagttctcgAATTTTAGACTAATATAAATCTTTCTcca
ttgaaaaaagaaagaaagtttaaATTTTAACGGACTTTTTATTGCAATGG
TTATTGGATCAACATTTGTACTCAACTGAATAAACATTCTTGATATTGGT
TCAAAATCTAAAAgtctgaaaaatatttcatttactTTATGActtttata
taccctggacatcCCGATCAAGCATaccttttttgaaagtggtacctaat
ggtagcactactcgatGTTGCtggattgaataacaaattGACCCACGTCA
AATGGTCCTACCGTTAGGTCACCACTTCtctaaaaactccgatcaaagat
ggcggatatagcttggtccagggtttatATAAGTCAGTGTTTGGTGATTT
TAACAAATAATATCATAGATCTTTCTCTAACATAACACCATTCTGCTTCG
TTTCCTTTACAGACCAGGCAGTGTTATTGTGGATTTACAGATTTTTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00045822TCONS_00045822Clytia hemisphaericatranscript
TCONS_00045823TCONS_00045823Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:46993..51339 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.68	1.49	1.5	0.67	0	0.64	0.86	0.15	0.2	0.25	0.24	0.19	0.49	0	0.14	0.38	0.45	0.28	0.25	0.27	0.24	0.34	1	0.63	0.39	0.25	0.37	0.5	0.4	0.41