XLOC_026812 (gene) - C. hemisphaerica

Overview
NameXLOC_026812
Unique NameXLOC_026812
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0003901:664..6940+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_026812 ID=XLOC_026812|Name=XLOC_026812|organism=Clytia hemisphaerica|type=gene|length=6277bp|location=Sequence derived from alignment at sc0003901:664..6940+ (Clytia hemisphaerica)
AGATAAAAAGTATAGTATGTATTAGATAAAAGGATAATACATAAAGACCA
ATGATACGTGGCATTCTATCCGAATTTGGAGATCAGTGATTCGAACGTGT
GGTTTTATTCCCTGGTTTCCCAGTGTTTCCCATTGGGCAAGTTCACATGC
ATTGGACCTGATTGGACGTTCCAAAAGTAGTTTCGGACACTTTCGGACCC
ATTTTTCTTCGAAACTATTTTCTTCAAGCATGTCAGATGAACCAGATATT
AAAGCAGCAACTAAGGTATGAAATTAAACTAATACAATTAAGGTTCCTAT
TGTgtattgataatttttttaggcTGGTTGTGATGATGATGTATAGCTAT
ATATATCTATATACTCAGCaaagttcttttattttttataaagtgTTATC
AAGCTTTTTttgccttaattttagtcaatTCAAAGTTGTGATGTATGGCT
ACCTTTATGTAAAACTTTCAAGCTGATTTTATTTAGTAATTTGAAGATAA
ATTTTTTGCAtggccagacgatctcaatcgaacggaattggcgatcaaac
cagtcgaaccaaatcgagcgcaatcgactgattgaaattcaattgtcgaa
cgcaattgaatctcaatcgaattttttgcagagagatgcatcttcgcaat
gctcaaaacatggccaagttcaattttagagaaatttttttttgcagatt
ttcattggatttttttcgtTAATTATgcctttttttttttctaaataaaa
cattatttataagaatgtccaccattaagcatggttcaattttcaatgaa
actgattttggtacagggaACTTTccggtttgtgtaaaccgcaggttaca
ggtcacaggttacaggttacaggtcggtgatgacaggttgactctaatca
atgtcattgcagaggaaaatgtttggaaaacacaaagaattatcaaaaac
ataattctcaagcaatttcatccatataaaaaNNNNNNNNNNNNNNNNNN
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NNNNNNNNttaaaataataactgaataattaattagttccatccttctaa
aaccactctcttagggaccttgcaagcttctgtttggtgccattttttat
ccattcacaccatctaCATCACATTTTgcatgataaatatttttcgtgct
tttgtcttgttaggcatcatgcTTTATGAGGCCGaccctaaaaaaaaaaa
agtttccggtccaccggccgggtgaaattttttttcgttgtcacccggcc
gcatttttttttcataagaaccaatAGATAACAGAGGAaactttcttctt
aaaaaacttTACTCATTTAaactcccagctggcacacaacgttgtttcga
cgtttataTAACGTTAAAAAGGCGTTATAaacattagatggacgttgaaa
caatgttgtgtaccagctgggctGTTACATCGTTCTCGTTGCTATATAAC
ACtcttaaaaaagtttgtttgtttagcATGACAGCATGCTTTCTGGACAT
TACGGATCAAATAAACAGTGTTATGCATTTTAAATgagtgaagaaaattt
ttctttgtctaGGATAGGAGGATTTCTGAACGTTAAAGATCAAATAGATA
GTGTTATGCATATTAAATGAgtgaagaaaatctttctttgtctAGGAGGC
TTTCTGAATGTTAAAGATCAAataagtatatgtaatcacatgataacgag
tgcaattcgaatataattgcatgagtgatttttttgttattaattttccg
agtccgaaaggacgaggaaaatttgaaacaaaaaaatcatgagtgcaatt
ttcgaattgtaccagttattatgtgattacgagctaatcgcacaatgact
gtcactactttttcccagttaggaaagtaaattacagaaattacactgag
agttttatctttttctcttctctttatgtctttcttttagtgttgttttt
gattttcgttctcacaaaataaatttcgaatgcaattaaaacgttcgatg
caaaaaaaatgtaagaaaaaacatttaaatcaattttgtaaacattggcg
cggcattggagagtgtgattaacgattaaatgctctctacaggatgcaat
taacgattaaattgctctctttgagggcgtgccaaataagaaaaaataac
ccatcgtgcgattaataGTGTTATGCAttaaatgagtgaaaaaaaagaac
ttttttctaaaaaatgacgcTTTTTGAAGATgactttttacaaattttct
tcaTGTCTTTTGAATATGTGAAGCAAATTTAAAGAAttatagctcaaaat
ttaagttggcctttcttctttctaacggtgaaaagatttttgtaacagtt
tctaatttttttgattagaaatcatgaaaaggaccaaaaaaaaatttttc
ccggcCGCCcgcatgactttttttttcgtcacccggtggaccggaaacca
aaaaatttttagggtcggcctgattttgtcattatttttgtaagtaaatg
tcactaggttgttattctatacaattgtcattttataatatctaaataac
atgtattacttttttgtaatttaatgcgttatgtattgatgttatgttat
gtatatatTATGATCTTAtcatcttttttccggtctgcactttgttgacc
tgtaacctgtaacctgcgaccTGTTACCTGTGGTTTACACAAACcgggaa
ctttctaaaaatcgccagaacagccgagaatcggatctcttgaatttctc
gagttgttcttgtattattctgcattttcatacgattgttgtcatttttc
aattgttggCCCAGCGTTAGCGAACGGGCCTTTCAAAAGCAACTGTCTGT
TTGTCCGtcccactttcgctttcgtttttacaAAAACCGTGCTCCTTCTA
AATTTTAGACTAGCAAGCATCCGTATTGCGTATTGTATTCAGTGAAGGGA
GTGACTCtgttcatagtgtcctccccccctggattcagggggggaaagaa
ttttttttgaagccagggtgGGGAAAAACGAGggggggatggaaaatttt
cattctaggcatgggggggggGGCNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGGGGGggaagagaccctgaaggacactatgcTGTTGCAAGCGG
AGCTGCAGAGTGAAATACAACGATTAGTTACTAGTCTATCTAAGTTATTG
TTGTTGTAGATCTCGCGCTCTTTGCATTTTATAGCTCAAAATGGTGGATT
AAGTgcaactcttttttttttctcctccTGAAATATCAGACCAACTCCAG
ACCAACTCTGACATTTTCAGACGCTGTTGTTTCATTGATTGTTGCTGATT
ACAGATTTATTGATATACAATCGTTATTTTTCGTGATTATTCATCCTTTT
ACTGTGTTGTTTGCTACTTGCTCATTTGTAAAACAAGAAgaggtatgtat
tttttttggaatataaatttttcagATCGAGTAGAATAGGCCACTAAACG
TCTAATCCTGACCACCCCTTTCTAATCCAGACCTACctctaaaacaaaca
atttttccaaatttagatGGTATTTTATATTGGTAAAGTAAAGACAGCAT
TTTCTGTAAATTAGAGGTAGGTCAGGACTGGTCAGGATTAGAAAGGAGGG
GTGGTCAGGATTAGACAATCTGACGGTATCAGATTCAAGATTTTTCTGCT
ATAAAAATGATTCTGTATTGGAAATCCAGTACTTTCAAAGTCTTTTGTCG
TCCACCCCCTATAACGGACTACTTAAACTGGAACAGCCCAATGCCCGTTT
TCAGACAATGtcaatcgaacgccgaatcaatcaaacagaatcgaacgcaa
tcgaatgatgcgattaattcgattgtcgaatacAATTTAattgcaatcga
atattacccaggaattaTGCTGTTCGATTATGAGATATAATCGAATCAAT
TGAGTAGGTGTGCCGCatttaatttttgtgattttaggtGCGCTTTTTAA
ATAGAGGGTGGCTTTAATAGGGGGCGGCGCTTAATAGAGGGCGGCGCTTA
ATAGAGGGCGGCGCTTAATAGAGGGAATTCTGTGGTCGCCGCCTTGTCtg
atcaaacgcaatcgaacatcattGTCCATGAATTGAACGAATCAAACGTA
ATCAACagtcaatcgaaccaatcgttAACGCATGTCCCTGGCAACCCCCA
GAAATTTCCAGGGCAATATGGGGGTAGACATTAATTGCTCGTTTTTCCTC
TTGCCTTTTCTTCCGCTCTACCCCGAAATTGAGCATGACGAAAGAGAGAA
CGGCCACAATCATTGCCTAGTGAAATTTTGGACAGTCAATTTGGCTGTGT
TTGAATAACATATTCTCTTTTACATCTTAGGGGTCtttgacaaaagattt
tcaaattttttatcggTATTTTTGGCCGATTAGGGGGGAGGAGTTCCAAc
tacataccgataaaaaaGCAAGTATTGTGACGAGAATCTTTTTAgcaaat
ttctttctgatttcgtccacaaactccactgaaaTCATGcaatttcactt
gctttcaccttcGCGCACAAATTCGca
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00043070TCONS_00043070Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003901supercontigsc0003901:664..6940 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.3	0.93	0.69	0.47	1.16	0.91	0.82	1.14	0.96	0.98	1.19	1.11	1.2	1.67	1.06	1.21	0.53	0.95	0.52	0.38	0.69	0.67	1.96	1.18	0.99	0.71	0.93	0.3	1.38	1.25