XLOC_023567 (gene) - C. hemisphaerica

Overview
NameXLOC_023567
Unique NameXLOC_023567
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0002021:1442..11560+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_023567 ID=XLOC_023567|Name=XLOC_023567|organism=Clytia hemisphaerica|type=gene|length=10119bp|location=Sequence derived from alignment at sc0002021:1442..11560+ (Clytia hemisphaerica)
AATTGTTAAATTTTCTtgtgatgaaaatcatgaaagTGATATTGAGATAA
AATGTGATATATCTTCCAGCACAGAGCTCAAAAACTTTATTGAAACCTAC
TCAAAATACACGGGTGAaaccttgaaaattaaaacacgAAAAAAGATCAC
TGAGAAGAGTATCTATTCGGTGCGAGCGTTTTATAGATGCTACCACGATA
CAAGGTACGAAAAGACAAGAGATGTCAAGTCAATATTGGAGAAGAAACCA
ACCAAAAGATTCAGGAATACTTTTTGTCCCTTTCAGATGTCGGTTAAGAT
TCTTAAAAGTGATTCTAATGAACAACCAACTCCATTTAGATGCACCATAG
ATATAGAGCATAAACACAATCACCCCGTGAATTCTCTTCATGCTTTAAGC
TTTAAATCGATTTCAGAGGAAACGCAAAATGATATCAAAAAGCTATTTGA
ATCTGGTATGACTCCTTCACAAGCATATGCTGAGTTTCTAGGTGAATTTC
GTAGGAAATGTGCTACCGACCTCGaatttcatcataaaaaagCTGACCGT
AGCTGTTGTCCAAGACGCTTTGACTTCAATGTGCTGTATGCAAAATTTTG
TGTTGAGCAGTTTGGCGGAAAGAATGGTCCAGATATGTTTGAATTATTAG
AAGAAAAGATTCAGCTGCTCAAGGAAGAAGACAACGATATGCACATCGAA
TACAAAATTCATGACAGAAAAGAAAGTTCATCTTTGATCATTGCAATCTT
GACACCTTTGATGAACCGAGTTCACAGAAAGGTTAGTTCTTGTATCTGTA
TGATGTCTTCAAAGCAGTTTTAAAGCAAAGTTGTACATTACAGTGTACTT
ACTCGCTTACTCAAATCTCACtttacattttgaaataatCTCAAATGTTG
TGTTTAGCATTTTTCAGGGTTTTACTATATTATAACACCCTGTATCACAG
AACCGGTgggacccactggaaaaatcagccaaaaaattgttttcggtgag
aaaaataccctgaaatttcatcaCCATCGAAAAACTACACTGAAATTTTG
GCCATCCCACTGGATTTCTTAGTcgtaaacaatagaatttgaaaTCTCCC
CATTATAAGCACAAGATTTCGACTTTAAGCTTCTTCATTTTATCTCCATT
GGATAATAAATTCTGAGGCAAGGGTGTATTATAGCAATTTATAACAGTGT
ATAATACCTATTATATTGTAGCCATCTAAAACGTTTGATATAACATATCT
CTCTCATCAGGTCAGACAATCGTCAGAGCTTATGTTTATCGACTCGACTT
CAAATTTGGACGAGCACAATCTACGTTTCTTTCTGCTTTGTACACATTCA
ATGGCAGGAGCATTACCTTTAGGTATTATATAACAGATTTATTTGTGTGT
TTGTTTGTAGTCTAATTTGTTGTTATAACCAAATAAGTAAGAGCTTCTTT
GAGGGTCTAAGGATNtagaaacttaaaaaaatggGTCGGTCCGTTGGTCG
GTAGCtaaaattggaactttttttcattttcccactaaaacctcaatttt
tgaaatccttCATTCCACGAGCAGTAGCCCAATCCATTGCAATTCAACCG
CATACTTAAAGAAATAGCCACATGCCTAGATCCATCAAGGCGAGCGCTGC
GATCGCAAAATCActtcttatctgatattccgatggcggattggtgGCCG
CCCagccacgctaaagctctaaaaaagGGAGCGCTCTAACTAGAATGCGT
CAAGGAAATTAGTGTAATCTGTgccttattttttattttgcttccatGCG
CGAAATGGATGTTGTTTGTAGAAGAAACTGTCAGTTGAAGAAAGAACCGC
ATGGAAGGTGGAGTCAGGTCACAGGAATAGGAGGTTAATATTTGATATCG
AAGCTTTTATTTTTCTGACtcaaaatgaaagattttttctcagaTATTTA
GAGTCAGTCggaggacacgaaccaaacaaAGTGGCAAGTGGCCATGCCCC
CCCCAGTGGCGTGGGCCCTGTAAATACCATCCAGGGGATATcaagttatt
tgtgatctcGGCCTATCCAGACGATGCCAAGCGAACGAATCAAACGCGga
atcaattgaatgcaatCGAAGGCCGATTGAATAATACCATGATtttctcg
attgattcgattgcgttcgattagtgcctggattcgattgattcgattgc
gttcgattaacTAATTTATTTGATTCGATAGATTCGACTACTGTACGTTC
GATTGGCTTAtgcattcgactggttcgaataattgattctgttgattaac
GCTTATTCTCTTTCAACGCTGCCTTGCCAGCTAGTCAATATTAATCTCGA
TGGGGAAGTGagtttttccattgaattttatCTATCTAAAGTGCTCATAA
ATACCGTATTTCCTCTATTAACAAAGCCCGTTCGTTgcgttgatttatct
atcgTATCGATACTTTAAACCTCCCTGgaaattgaaaggaattaaaGTAA
ATGGGAATTAAATTTAATCGAACGCagtcgaacatcaatcgaacatcaat
cgaacgtaatcgaacgtaatcgaatatcaatcgaacgttacaatcgaata
tcaatcgaacgtaatggAATACCGATCAAACTTAATCGATATTAATCGAA
CGCAATGGAATAAtatcaattgaatcaatcgaattttacccataatttta
cgttcgattgatattcaatCGTGTTTGGCAATCGCATCGCAatcgttcga
ttgattcgattggaattttcgttcaattccgttcgattgacattGTCTGG
GCCTATGTAAAAGGGAATACTGAGTcacatagcgtcagcccccctgCTGG
TTGGGCAACACCCTAAAtctttcccaaaaaaggagggggctggaagtaca
ctACTTTTTTGGGGACCTATGTccttggggggagctaaaatctcatcact
taacgtgggagctaaaataattcagcttaatagttggcttcaattactca
aattgaagctcatgaatctgaaaaattttcgcTTGCGGcctaatattttt
atagaaacttagaactgaacacaatttacattggaaaaaccttttttact
tttaatttttagaaattgtCTAAGttcaaaagtcctgggggctaacaaaa
aattcataaatctttgggggacttaaaactcagggaggacctaatttttg
cctgtgacctaaacccaggctgacgctatgagtcagcaatattgaaaatt
aaagtgatttgtTTCAAGagtgtgatttttgaatttgtattcaaaagttt
gaaaacgTTTGATTGCCAcattaaaaaatctaaatttgtgTTGCTTCTGA
CCATCTAAAATGCTGTTGATCGTGATTGTATACAGAAATAAAGTTCACAG
CATCAGCTGGATCAATTTCATGAATCTAAAATTAGTTTGTCTTGACTAAA
AAAGAATATAATTGTATTCAATATGAACTCAAGGCTAGCCTGCATGGGAG
TTCTAAGAAAAATGTTGAccttttatgaatttttaaaatgctcaatttta
aaaatgcagttgaaaacattttattgtGTCATCCATCCAAAAGATATTTT
GTTTCCGTGCAAATCCAGGGATCGAAGTAGCATATCGCATTTCGCAATTC
ACGatgcgtttttggattacttacaagctaaaaattgaaaattgatccat
tttaggatgcaaaatcatgcttatcaaaaaattgcgatgcactttctatc
ccCTATTTCGACGCCTGAAATCCATTTGGAGAGAATTATTTGGAttaatt
aaagtttctaaattTGGTCCATAGGATTTGAATGTTTTCACTGTGTTAAT
TTGTGTCTTAAAAAATGCCTTCTGGAGGCATTGGAAGTCTTTTTTGCCGC
TTCTTATAATATGAAATATTTATTATTACAGCTACTTGCTTTTTGAACTG
ACAGTTTGACAAAATATGACATGACATCATGGATATTGACAAAACTCTAC
AGGACAGATAAACACCTTTTATGACTGTTTAATGCTGCGAGGAGATACAT
AATAACATCATAACTTGACAAAACAGGTACAGAAGACTTTTTCAGACTGT
TTAACATCTTTTTGTTGCTAATGACGATGGATACTGTTAAATACTGTGAG
GAGAAAATGGTGGGCAAACTTGAGGCCGCAccaaaaaatttcttgtttct
GCATTACCGGATGACAAAATAAAGTCACCCGGACAGCTCGATATTTATTC
TTCATTCGTGGTGGCTTTGCGTAGGCGTACCGCAATAGTTTGGTCATAGT
AAGCAAAATTGCAAAACACAATTGTATCTTACACTAAAAATAATACTCTT
GCTCACACACTTGTGAATTTTGACCGCCTTGGTAAATTATAATTGCACAC
TAATAACCAATCTGATTGCAATGGAATCAATTATGTGTATGAAGTTGGCA
TGAATGGTGACATTTTATCTTATTAataagatcttatcaagaaaaatgac
tttaaatttttttctctagtTGATAAACCTAtacttaaaattattttttg
tggcCTTGTGACTCGATAACACTTTTTCACGCAGAAACCTGCAGAAACAA
GGAATTTTTTCAGTGTGGCCTGCTCAAAAAACAATTTGATCATTGGGAAT
TAGCTTGATGCAGTGTGAAAATGTAACACTTCGACATCTCGAACTGTCGG
TGGTTATTGTATCGATTCATTATGTTGAATGATCAAATTGCATTGTAATC
AACATTGTGCattgatttgtttattttgttttttataggaaaagGAGTAT
TCACAACAAAAGAATTCCATGTTGGTGATTTTTTATTGGAATATGCAGGT
GATTTTATTTGAACTTGTTTCTTTGCCTCTTGTCAGACAGAAGGGACTTG
AGTTTGAGAAATGCCTTTTTTGTTCTTGAGGCAGATcatttataaaaatt
tcaattatcAAAACAAGTAACATTATCATACTGAAAATAATCTCCTTTGA
GTTGCCAAGGAATTATGATAGAACAGGGATGAGCATTTAGTTACCACCAG
ACCACATCATAACCTAGCACATGGTGGCATTGACATGAACATTCGAGATT
ATAGTCAGTAGTTTAGAGTTCCAAGATTAATTAAGGTGGTCCTCttgaaa
aaattactttgcaGCTAGTAAATATTGGTACTAAGCAAAGAGTTTTAATG
ATCTGCTCTCCTTTATTCTTCATTCTGGTTCAATCTACTCTCGGATGAAA
ACATTTATATCTGTTCAAGAAATCATAGTTTTCTGTCCAACTGCACTCAA
TCGCAGAACGTCTGATGCATTTTGTCGTTATTGAGACTAATCAGCACTGC
ATATTACACTTCTGGCTGACAGGTAGAATTACCAGCATCTCAGTATAATT
CAATTCACTTGGTACTTTTTTTTAGTACTAAGTAAGAGAAAGTACTGGGT
GATCAGGTCAGAATAGAAAATTGGGAATTTATCACTTAGTTTTATTGTCT
CATACTAATCACATGAACCCCCGGATACAATAGCACACCGTTATGCCGAC
TTCTTATTTCTTCTGACAATTGTACGACTTCCAATAACATAATCCTTTTC
ATCTTTGTAACCTGATAGAGTGTATTTAGCATGCACAAGAAATTAATGCA
AAAGATGATGGGCTCCTAATTCTTACAAACAGAAAAATGagtgtctattt
ttagattcgctgCAATGTGCTATAAAATCTGTTTTTTCAATTAACTTTCT
CTGTAACTCTGTCAAGCTTCAAAATAACTTTACTTTTTAGGTGAGAGAAC
CACTTACGAGAAAGTTTTGGAAAGAGAGAAAGAATACGAGGATCTTGGGA
TAGGATGTTATATATATTATCATTTAAAAGGACCATCTGGAGACTTTTGG
TATGTAAGTTTATTATTGGAgggatagatagatagataggcCCTCCCCAT
GGGGAATAGGTCCTACTCTTTTTGAAGTACGAATTCCTCTTTTTCAAGTA
GGAATCATAGCGCTCTCCAGAAATCGCCGGCTCTGTGCGCGCGACACACA
GATACCATGGTGCATAGTAGTGACACTGGAACTACACGGGAGAGCATACA
CGGGAGAGCATGTTGCTCTCGCAGACATAGAACCTTATGAGTGCCTCCAC
ACACAACAATGTCTGGCAtatctacccacactcttgtatcacaGTTATGG
TACCCAATTTTCCTCACATGGTAAGGGTTGACCCGGGGGAAGGTGttttc
acttgccaagtgaaccgtagtACCACAGTGAGAATCAAACTTGGGCCTCC
TGGACGAAATTTGAGAACGATGACCACCACACTACTATGCCCTGATTTGG
AAATCAGCttctaattttctttatttttcctgaaaaataaatttgtgtaA
TCAACATTCTGTAGGACCCTTGAAAGATTGAGATACCAAGCGTTCACTGT
ATGCCCTGGTACATGCAATGAATGCTCTTATTCCTAATAAGGTcttttgt
atttgttttttaGTTTGGATGCAACCAATTCACAACAAACCGGAAAGTAT
GCAAAGTTTCATATCTAAAAAATGTATTCTATTACCTGTAAATTATCTTT
TAAAGTGACCATGTTGTTTTCCTAATAAAATAATAGATACCAATGACTCC
CGGTTACGGCAAAAAGCTCAATGTTTGATATGACAAAAAAAAGAGATATA
AGTCACAGCACTTTAACTTCGTAACTTTATTTTTTGTGGTCTTAGTTTGG
AAAAATggcaaagatttccaaaaaacaggaaaataatttcattcaaaatc
aaCCTTACATggtaaaataataataaatggGAAACTGTTAAGACTGATTT
TGAAGTAATTATTATTGTGTTACAAGTAAATGAATCTTTagagtttttct
ttatttagaaaATTATCAGATAATCTCTTGAAGCTTATTATTTTTAGAGG
ctaccaaaaaaaataattaagttGCGACCGGGGGATGTCCAAAGAAAAAG
TTCACCCGGTCGATATCGggaaagaagaatttttttttttggccttatAA
AAAAGGGTAATGCACTTATTTTGGCTTAGTTTTCACTTGATAGCCAAATT
TAGTGCACATAATTTGTGAGCAGACTCAGTTAGCTTATCAAACGCCTTAG
AtgttaaagaaataaaattggttCTATTTTAGATACATCAATGATTCAAA
GCAAAGATGGGCAAATGCCTACACAAAGAAGGTGTTAGTAGAACAAGGGA
CCAACAATAAGACGGCATATCTCTGCGTTTTCGCGAAAAAAACCATACCA
AAGGGTTGTGAAATCAGGTaagctcaattttgaatttgttttttcaagtt
tttctttgGGAATACTGTGCAATCCGGCAGATCATTAGAGAAATTCTACC
ATTAAATGTTGTGATCAAAACTGATCAAAACCACAATAAACTTCTATTTT
TATATTCTAGTATATGAAGTTGTGTATAATTAACCCAGAGGCCCACAATG
ATTTAatgtacttttttcttttagataTGACTATGGAGATGGTGACCAAT
CATGTATTTGGCGTTCAAAGGTACTTATCATGAACTTGTGTCTCAGCAGC
TTAAGTTTACTTGAATTGCTAACAAGGCATAGTGGCATAAAATCTTTATA
GCACTTCAATTCAATATGTTCTAAATAGGTGACTTTGTTGCATTTTCAGC
TGTATGTTCCTTAAAGCAGGCTCATTTATTTAGACTTTCCAAACTCAAGT
AAAACAATCACAAAAATTTAATTGCAGCAAGATTTTTGTTTTAGGAAGAA
AATCAAAGACCCTTAATGAAATCTGAGTTGGTAAGTGTACAGCAAAGTGA
GCCATGCAACATTTACATTCCTCACTCTTGGGTCCTAGAACAGCCTTTCT
TACTACGCTTATTACTGTGTAATACATTTTGCAAGTTTTCTAACCGGATC
AATACTCAACTTGGAGTCACCTTATGAGGGGGGCGTACGGGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAGAGA
TATAAGTCACAGCACTTTAACTTCGTAACTTTATTTTTTGTGGTCTTAGT
TTGGAAAAATggcaaagatttccaaaaaacaggaaaataatttcattcaa
aatcaaCCTTACATggtaaaataataataaatggGAAACTGTTAAGACTG
ATTTTGAAGTAATTATTATTGTGTTACAAGTAAATGAATCTTTagagttt
ttctttatttagaaaATTATCAGATAATCTCTTGAAGCTTATTATTTTTA
GAGGctaccaaaaaaaataattaagttGCGACCGGGGGATGTCCAAAGAA
AAAGTTCACCCGGTCGATATCGggaaagaagaatttttttttttggcctt
atAAAAAAGGGTAATGCACTTATTTTGGCTTAGTTTTCACTTGATAGCCA
AATTTAGTGCACATAATTTGTGAGCAGACTCAGTTAGCTTATCAAACGCC
TTAGAtgttaaagaaataaaattggttCTATTTTAGATACATCAATGATT
CAAAGCAAAGATGGGCAAATGCCTACACAAAGAAGGTGTTAGTAGAACAA
GGGACCAACAATAAGACGGCATATCTCTGCGTTTTCGCGAAAAAAACCAT
ACCAAAGGGTTGTGAAATCAGGTaagctcaattttgaatttgttttttca
agtttttctttgGGAATACTGTGCAATCCGGCAGATCATTAGAGAAATTC
TACCATTAAATGTTGTGATCAAAACTGATCAAAACCACAATAAACTTCTA
TTTTTATATTCTAGTATATGAAGTTGTGTATAATTAACCCAGAGGCCCAC
AATGATTTAatgtacttttttcttttagataTGACTATGGAGATGGTGAC
CAATCATGTATTTGGCGTTCAAAGGTACTTATCATGAACTTGTGTCTCAG
CAGCTTAAGTTTACTTGAATTGCTAACAAGGCATAGTGGCATAAAATCTT
TATAGCACTTCAATTCAATATGTTCTAAATAGGTGACTTTGTTGCATTTT
CAGCTGTATGTTCCTTAAAGCAGGCTCATTTATTTAGACTTTCCAAACTC
AAGTAAAACAATCACAAAAATTTAATTGCAGCAAGATTTTTGTTTTAGGA
AGAAAATCAAAGACCCTTAATGAAATCTGAGTTGGTAAGTGTACAGCAAA
GTGAGCCATGCAACATTTACATTCCTCACTCTTGGGTCCTAGAACAGCCT
TTCTTACTACGCTTATTACTGTGTAATACATTTTGCAAGTTTTCTAACCG
GATCAATACTCAACTTGGAGTCACCTTAtgaggggggcgtacgggtgcat
ggcatgtttgacaccgaaataccgtcacttttttcttcaaacaccgaaac
accgataGAAAAAAGGGTTGataccgtcacaccgtcaaacCCGTACGCAG
TGATAAAATGTCATTCGTTTGAGGTAACTTAGGTTAGTGCACACATATTG
TATTTAgacttttgttttttatctttattaGTTGCATTACAAAAGGGAAG
AAACTGAACGAGGAAAGCAAGACCTAGACAAGGAAACTGACGAAATGAAA
GAAAGCAACCAAATGGAAGAAGCTGAACAAGGAAATCAAGACTTAGACAA
GGAAACTGATGAAAGGAAAGAAAGCAACCAAGTGGAAGAAACTGAACGAG
GAAAGAAAGACCTAGACAAGGAAACTGACGAAAGGAAAGAAAGCAACCAA
ATGAAAGAAACTGAACGNN
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00039133TCONS_00039133Clytia hemisphaericatranscript
TCONS_00039134TCONS_00039134Clytia hemisphaericatranscript
TCONS_00039135TCONS_00039135Clytia hemisphaericatranscript
TCONS_00039136TCONS_00039136Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00039133-proteinTCONS_00039133-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002021supercontigsc0002021:1442..11560 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.15	0.08	0.18	0.14	7.99	8.3	4.62	6.4	3.57	3.82	3.55	5.62	1.98	2.37	0.07	0.16	0.06	0.02	0	0.03	0	0	0.03	0.03	1.45	5.09	0	0.08	0.06	0