XLOC_020742 (gene) - C. hemisphaerica

Overview
NameXLOC_020742
Unique NameXLOC_020742
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0001316:17787..24908+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_020742 ID=XLOC_020742|Name=XLOC_020742|organism=Clytia hemisphaerica|type=gene|length=7122bp|location=Sequence derived from alignment at sc0001316:17787..24908+ (Clytia hemisphaerica)
GTTGTATATCATTTATTGTTACCATTTAATTACTATTTAAcaacaataaa taaaatagTGTCAcaaattgctcaaaaataatttttgaaaaatctgagtG AGTATCctgaataaaaaatgaataaaatctGCAATATACTTACTGCATTG TTGTAtagcaaaatttctttactaATTAATATTTATTATATAATTTATCA AAGGTGATTTTATTATAcaaagacaaaattgttgttttgGCAGTTCTGTC AAACAATGTAGTGTCCTGTTGAGCATTAATGTCATTAATGGCCCAATGAA TCTTTAAGTATGAAGTGAGTTGAGTGAGCCCAAAATGACTtagacaaaac aaaatttctgtgGCCTCAAACTACTTAAGATTTATTATCAACATGTGAAT TTTCAAGCAATACGCTTGTTTTTTTGTCGgggatttcaaaattttaaagc atGTTTTGAAAAGACAGGTGTTTAAGGCTTTGTCCCAATTATTGTGCCAT TATTTTGATGAGAGTATCAAAAAACATATACTGAAAAGGCCAAGAAGTGC TATTAAAACTGTCTCCGTTACCACCAAAACTTGCATTTGGGAAATATTGT TAACCGTGTTTATGTTCTTATCGTTAAAGGCTGATATATATTAGTATATG GTGTGGCTGTGGGGCTTATATCACATTGAATATTAGCGACTTTTCATGGT AGCAGCGAGTGGTTATTAAAATGGCGACATCAGAGAACTTCAATAAGCCC CCAGCATTTGGTGACGACAAACCTTACAGTAGATATGTAGAAGAATTGCG TGCATGGACATATGTGACTAATGTCGCAAAGAAGAAGCAAGGAGTAGTCA TTGCACTCTCGTTGCCAGAGGATGACAAATCGCAAATCAGAGACAAAGTG TAATAATGAGATTAATATGGACGATCTCAAGAAAGATGACGGCGTGGAGA CATTAATAGCGTTTTTGACACAGTATTCAAAAAAGACGAGCTAGCGGAAG TGNGAGAGAGAAAGTGTTTAATGAGATTAATATGGACGATCTCAAGAAAG ATGACGGCGTGGAGACATTAATTTAGACATTAACGTTTTTGACACAGTAT TCAAAAAAGACGAGCTAGCGGAAGTGTATGAACACTATGTGAACTTTGAC AGAtacaagaaaattgaaaatgataNCAAAGTGTAATAATGAGATTAATA TGGACGATCTCAAGAAAGATGACGGCGTGGAGACATTAATAGCGTTTTTG ACACAGTATTCAAAAAAGACGAGCTAGCGGAAGTGTATGAACACTATGTG AACTTTGACAGAtacaagaaaattgaaaatgatacaATGGATAGTTATAT TCTCGAATTTGAAAAGCGGtacaacaaaaccaaaaaattcaagatgcaAC TACCTGAGAGTGTTTTAGCGTTTAAGCTGCTTGAAAATTCAGGACTTCAA AATAACGATCGCTTACTCGTACTAACAGGAGCTGATTATAACAAGCAAGA CTCGCTATACAAACAAATGAAAAGtttgttaaaaaagtttttcggtCAAC AAGCAAAACCCATTCAACCTGAGCAAAATCAAAGCATCAAAATCGAATCA CCTGAATCGAGCCAAGAACAGGAAGCCAATGTAGTATACAGACAGCAGTT CCGTAACAGAGGTGGAGGTCGGGGTCGAGGTCGGGGTCGAGGTCGTTGTT GAGGTCGTGGTCGAGGTCGATACAACAGCAATCGAGGCCGATCGTTGATC CATGGAAATCAACCTGCAACAGGACGAAAGTCAAATCCATTAGANGGAGG TCGGGGTCGAGGTCGTTGTCGAGGTCGTGGTCGTGGTCGAGGTCGATACA ACAGCAATCGAGGCCGATCGTTGATCCATGGAAATCAACCTGCAACAGGA CGAAAGTCAAATCCATTAGACGGAGAAGGAAATGTGAAGCGTTGTATGAT GTGTGACTCAAAGTTACATTTTGTGAAAGATTANACGGAGAAGGAAATGT GAAGCGTTGTATGATGTGTGACTCAAAGTTACATTTTGTGAAAGATTACC CACATGCGTATGAAAATATGGAACAATCTTTCCTTATCGAGACTGAACAG TTTGCTCTATTCACAGGGCAAAACAATAACGAATTGAACGTTCTGTTGAC TGAATCTACTAACTCTGCTGTCCTTGACAGTGGATGCTCGTCGACGGTTG CTGGAAAAGACTGGATTGAATGTTTCGTTGACTCATTAAATGAAGTTGAG AAAGCTGAAGTTATTTACAAGGACAGTGATACCGTGTATAAATTCGGAGA TGGTGAACGACTCCAATCAACAGGCAAAACAGTGTTACCTTGTTATCTTG CAGGACAGAAATGTACAATCGAAACAGACATAATTGAGAGTGATATACCC ATGCTTTTGAGTAATTCCGCAATGAAAAAAGCAGGGATGAAATTAGACTT AGTGAATGATAAAGCTGAAGTTTATGGAAAAACTGTTAACCTTCAAAGTA CGTCAGCAGGTCATTATTGTATTCCGTTAAGAGACACATCTATTGACATT TAATGTTGTTTTACCGGTGTTGAGAGTGATGAGGAAATTTCCAATGTTAT TACAAAACTTCATAAACAATTTGCTCACCCTTCGCCAAACTGTTTAAAGG GTTTATTTGGTTGTCCAGAGAAATTTCTTGTAGATAACGGAGGCGAATTT GCCAACGAGGAATACAAGGACATGTGTGCAAATCTCAACATTGAAGTACG CAATACTGCGGCGCAAAGTCCCTGGCAGAATGGTTTATGCGAACATAACC ATGCCGTTGTTGAcgaatgtttacaaagattttggaaaaaaatcccaaGA TGAAACTCGAAATTGCTCTAGTGTCTGCTAGTGTGAGCAATTCATGCTAA AAACTGTCTACAAATGAACTCTGGATATAGCTCATATCAACTCCTGTTTG GGCAAAATCCTAACCTACCATCTGCGATCATTGATAAGCCACCAGCTTTC GAAGGGACAACCATATCTGAACAATTTTACAAACACCGTAATGGCTTACA TTCCGGGAGACGAGCGTTCATACAAGCAGAATCATCTGAACAAATCAGAC GAGCCTTAAGACATCAGTTGCGAAGTCATAGCGAAAAGTTTGAAACTGGT GATCCTGTATTCCACAAACGAGAATCGAGTAACAAATGGATGAGTCCAGG AAAAGTTATCGGTCAAGACGGCAAAACTATCTTTGTTCATCACGGAAGTG TTTACGTCAGAGTCCCTAACTGTCGAATCCTCAAAGTCGGCGAAGAATTT AGCAACAAAACCAGTGACCAAACCAAGGATGAAATTAACAAGATTACCTC GAAGAAATCTAGTCCAATAGACTCTGATGGTATTATCGATGAACCTGGGA CCAATCACCACAAGAACATTGTGATGATGAACCAATACCACCAACCTCTG TCGAGACCACTACATTACCCGCTTAACTCTGGCCCTAAAGAAAAGCATCT TCCAAAGTTACAAGATATTGTGAGGATCAAAGATAAAAATTCAGAGCAAT GGAAATCTGCACGAATAATCAGTAGAGGGGGTAAAGAGACAGGAAAATTT GCTTCGTGGTTTAATGTTGAAACATTGGACAATAATGAACGTTTATGCCT TGATTTCTCCTCAGTTGAACGGGAGGATAAAAAGGTTTATGGTGAAAGTG TCAATTACAATGCGATATTTCGTGCTGCCAATGATCGAGAGAAAGAACTA GTTAAATAAGCCAAAGAAAAAGAGCTTCTAAActggaaaacttttgatgt tTACGATCAGGTCGAATTCAAGAATCAACCTTTAATTTCAACAAGATGGG TAGTAACTGAAAAACAACCGGAACCTAATCTAGTAATCATAGCTCGACTA GTAGTGAGAGGATTTGAAGAGACTTCCAACATTCCCAGTGATTCATCAAC AATTTCCAAAGACTCTCTTCGTACGTGCTTTGCCATTTCATCCACAAAGC AATGACCTTTAGAGATGATTGACATAAAGTCAAGGAGAAGACATAAATCG TGAGGTTTTTGTCAAACCGCCCAAGGAAGCTAAAGTAGCTGAGAACATAG TTTGGAAGCTACGGAAAGTAGTATATGGGCTCAATGATGCATCTCGAAAT TGGTATTTTACAATTTGAGAAACACTTTTACAACTTGGATGTATACAATC GACCATCGACAAAGCGCTGTTCATGCCGTGTGATTCATCCAACCAGCTTG CAGGAATGTTTATCTCGCAtgttgatgactttttgtactCTGGTTCACAG ACCTTCTTAAAAACTGTTGTGAAAAAGGTGTGTGAAACTTACAAAGTTGG TTCTAAGGCAACTGACATATTCAAATACATTGGTTTAGAAGTTTCGACTA ACCAAAATGAAACAACTTTATGGCAATCGATGTACGTAAAATCAATCAAG GAGATCCCAATCTCACCATCaagaaagttaagaaaaaaCGATAAAGTGAC ATCCGAAGAGGAAAAACTTTTGAGAACAGCAATAGGTCAATTGAATTGGG TGGCAACGCAGACACGACCAGATCTTTCGTATGGCGTTCTCGAACTGAGT ATGATAACCAACCGAGCTACAGTCGATCATTTACTTCAAACGAATAAAGT CATGAGAAAGTTGAAATCTGAAGTGTTACAAATCAAGTGCCCGCGTCTTG GAGAACTTCGTATTCTCATACTTATGTTATTCAATGATGCATCGTTCGCA AATCTCCCTGACAGAACTTCCAGCACTGGTGGTCGAGTTGTTTTTCTCTT CGGCGAAGGAGATAAATGCTGTCCCACCTCCTGGTCGTCTACAAAGATTA AACGTATTGTAAGAAGCACTCTTGCTGTAGAAACATTGTCACTTGCTGAT GGTTGTGAAGGTGTTTTCGTTATCGGACACCTTCTAACAGAATTGATTTA CGGAAAATCTGATCAACAGAATCGAATCCCCATAAAATCATTTGCTGATA ACAAGTCTCTCGTACAAAATGTTCATTCGACAACAATGGTTTCAGAGAAG AAACGAAATGATACATGATAATAAAATGTCCATCAAGTGGATCGAAGCTG CGAAGCAATTAGCTGACTCCCTTGCGAAACGGGGAGCGTCATCCCGCAAT CTAAACCAAGTTCTTGTTTCCGGAATGTTGCGTCAACCATGAGAGTTTTG TTAAATGTTATTTGATATCGGTATTTTGATATGTTTATTGCATGGTGAGA AAGGTTTTGGTTTATATTAATGAGATaggtatttgaaaatttatgatgAT TTTGAGTTATTGAAATCAAATTTCTGGTACACGATCGATTATTGATGGAT ATAATTGTTTTAATTGGTTCCAGTTGATATTGAATATGTTCAAATGGACC TGTTACACATGACCGTCCATTGATCTTTggttttgatatttgttttattg gtaTGCTTTGCTTGGCGGACATGATACAAATGATAATATGTTTTGATAGT TTATTTTATGTGACGACCTGATTATCTCTCTTCTTAAAAGAGTTAAAAGA GGGGAGTCTGTTAACCATGTTTATGTTCTTATCGTTATAGGCTAATATAT ATTAGTATATGGTGTGGCTGTGACTTTTTTTCcactaattttaaatttaa aatttaagcTGAATAGCACAATCAGCTAAAATCGATCAGTTTCAGCAGTT AGGCAACCAAAATGGAAAAGACAGGGGAACCCTTAAGTCATCAACAAATA CCAAAGTGATCAATTATATGAACTGAACTCATTTTGTTACCGTAATGGAA CTTATTTtgacgagaactaattttggcgaaatttCGGCGAGCGAACtcga aattcgccaaatttagttcccaccaaaataaaatttttaggtcattcgcc aaattaagttctcgccaaaattaaaaaaaatcgttgatttgccaaattaa gttttcgccaaaattaaaaattttggtattttgcctaaataacttcttga gttcacaaaaaaagcttcaaacaaggcaaaatagaacagatttacgctgt cattcgccaaaataagttctcgccaaaatttaaaaaccgtTGATTCGCCA AAACAAGTTctcgctaaaattaaaaaaattcctggctcgccaaaattaat tctcgccaaaattaaatatttttttttgaatcgaCCGttcgtcaaaatca gttttcaccaacaaaagttcccttaaggtatgatATATCAGGGTTTACTT ACAGTAAACTTTGAACAGCTTGTTAAAACTTTATTATCATGTTTATATAA GGAATGCACAAACTTCATGTGAATTCGTACGTATATATACTACTCCTAAC AGAAAGGCCTAAACAACAATTTTGCACCAGCTCTaaataattttaacaaa aataacaatccATATTATCAGTTGACGCCAAATTTTGAATTATTCAAACC TGgttcaaaacataaaatatgaCAGATAATATCATTTTTCATCTAATTGA TACTTCCTTTTGTCATACTCTAAAAActttccccaaacaacattgtAAGG ATGTGCAAAGCTTGTTTCCATACCTTTATCGTCAACAATGCGTTTATTTT CATTTGCCCACTTGAAAAGGCCACCTTCAAGATTGTACAAAGTTATACTA CTTCTTTTAGAAGTATCCAAACATTTGtacaatttttgaacaaattcaCA AGATCTATAACCCATTGAGCAGAATGCAACAACATTTGATATTGGTTTGG ATTCGATAAGACATAAGATTTTGTCCATATTCTGATTATTCGGTGAAATG AAAACAGCATTCTCTAAACTGCTGATGGATTGTTCTTGCCTTTCTCGAAC ATCTACAACTAAAACAGTTTCTTCAGATTCTTTTTGTAGAagcaactctt caaaacaatttgttgaaatttgatttACCTTTGGAAACCTACTTCGTATG GTTTTGAAAAGCATCCGAGACGAGAAAACTTCGTTAGAAATATCTGGATT GGATTCTGCCATGATGAATTATCTGAATGATAGCATAACATGCAAACCAA TATTCTGAAAGTACTTTTATAATGAACAGACTTAAAAGTAAATGAATTTT TTATGAGAGACTATATCAGAAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00035472TCONS_00035472Clytia hemisphaericatranscript
TCONS_00035473TCONS_00035473Clytia hemisphaericatranscript
TCONS_00035474TCONS_00035474Clytia hemisphaericatranscript
TCONS_00035475TCONS_00035475Clytia hemisphaericatranscript
TCONS_00035476TCONS_00035476Clytia hemisphaericatranscript
TCONS_00035477TCONS_00035477Clytia hemisphaericatranscript
TCONS_00035478TCONS_00035478Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00035475-proteinTCONS_00035475-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001316supercontigsc0001316:17787..24908 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.56 1.4 1.72 2.08 3.05 2.24 2.91 3.52 1.52 1.98 2.39 1.49 2.04 2.43 1.7 1.89 2.16 2.38 2.09 2.36 2.92 2.72 2.02 2.71 3.97 4.69 1.74 1.18 3.24 3.64