XLOC_016076 (gene) - C. hemisphaerica

Overview
NameXLOC_016076
Unique NameXLOC_016076
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000675:20428..28979-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_016076 ID=XLOC_016076|Name=XLOC_016076|organism=Clytia hemisphaerica|type=gene|length=8552bp|location=Sequence derived from alignment at sc0000675:20428..28979- (Clytia hemisphaerica)
GAAGATTCCATCTAGTTCGTCTAAAGATGTTTGAATATTTTTCGGGAGTT
ATTCAAATCTAGGTTAGCGCTTATTGGAGCACATGGTTTTGTTTACCTTT
TTTCCGCCATTTTTATTTTCAAAATTTTTACAAGATGAAGTCAGAAGTTT
TTCAGCAATTTCAAGAGGTGAATTTTCAAGGATCAATCACATCTGAAATC
AATCTTGAGAAGTTCAGAAGAGAAGATAAAGAACTAGTGTTGATTGCAGC
ACCTGCTGAGGTATATACCTTTTCCAAACGAATGAATTATACGCCCAGGA
GGAAGAAGGAGAAACAAAAAACAACTACTAAAACAGGAGGAGAAAAGCCT
GATTCATGGTAGCCCGGGAATCCATGCTATGATTTCTTCTTTGATAAACT
GATGGCGAAATGTATAGCATGGTACGGGCTGAGAGTTTGAATTTCTCAGA
TCCTAATAACGGTTGAAAACATACCCAATCAAATTTTGTTACTGGTCACA
CTTTCTTTTAGAGAGCAACTTTCGAAATTTGGTTTTCATTTTAGTAAGTG
AGGACAGCGCTAAATTCGAATTTCCCACTGTAAAAAATGTGAGTCCAATA
TTGGACTCACAGCTCGAACCCGTCTTGTGTATATACATCAAATTATAAAA
AAACACACGACAGGTCTCCTGTCTAGATTCATGGGGAAGAAAAGTAGACT
CTTTGGTTTGATATTTACAAATTAGTGACAAAGTTAGGCGACCGGTCATT
TTGAATGAAAACAAAAAAAATAAAAAGGACGCGCTATCAGTGAAAGTTAT
CGTGACATGATATGACAGAAGTTATGATTGATAAACTTGGTGGAAGTATC
CAAAACAAATTTTTTGTCAAAGTGCTTTAACAGTATACAAGTAAAAATAC
ATTCCAGATATCAACAGTCCCATGTTTCGACCAACCGTCCAAAGTTAGAG
CAGTTTATTCATTTGTTCTTTAGTTCTGTAATAATTTTTCAGTTTCTTCT
AGGTTCCCCATTGTATTAGAGAAATCTATTTTTTTTTTGTAAGGGGTTAT
CCTGCTGTGTTGCAGCGAAAATATATTCAATTCAATTCAATTCAATTCAA
GTTGACGGTAGATGAAAAGATTTGACTCATACCAACCTTGAAAGCTAATT
TGAAGAACAACACTGTACAAGTAAAAGTAATCTAAGGGTGAGAAGACGGC
CACCTAGATCTGCGCACCACTAGATAGGCTTTTTCTCAGAAATTTTGTTG
GAGCTTGAGACTGACCCACATGTGCATCCGGAATAATTTTTAATTTAGTG
TGTAATTAAAGCATAGAAAATGGAAATGCTAGCTCAGGAATTGATCAACA
AATTTTGGTCCATTGATTAGCTGGTTTTTGCACATTACATGTTTTTTTTT
ATAAGCATAACGCTTATAAGCATATGAAGGCTCAGATTTGCAGAATTCCT
AAGCATAACATGAGCATAATGTCAGCCTAAAATATTTTTCAAGTGGTCAT
TTTTATCTGTTTAAAAAGGTTTGGTAGAGGTCAAGTAAAAAATAAGACAT
TCTACGACTAGCTTCATTCCACTGCTCCCAAAATCTGAATACATTTTTAC
AAAATTTCTGAAATTTCATTAAAATCTTGGCTCTGGGCGAATCATTCTTA
AGCATATAATAAACATAAACTATGCCTGGATGCTTTGAGAGCTTAAGCAT
ACACGAGCTTGACCAAGGGGCATACACTTGCTTATAAAAAAAAAAAACAT
GTATTAGCAAAGGATCACTTTATTTTGTTTCAGTCTTTCAAATTCAAATT
TTATTTTTGTCTTGTGATCTTCAACTTGATTTTGGTTTCTTTCATTCTAG
GTCAATTTAAATCATGGTACTTTCGAAAAGTACCTTTATTCTTGGTAATT
TTTCATAAATTCCCTCTTAGAGCCTTTTTTTCCCTGTTGCAAAAGCTTTT
TGGTCCAAATTAAATCCAAACCAAAAATTCTTCTTTCAGACCAGGTTTAT
TATTTAATTTATATTGTTTTACCCTCTTTACTTTTCTTGTTTTATAGTTT
GATGTGGGAAATCTCAAAGGACAAGTGATCGTTCCAAATGGAGTGATTAG
TATTGGTGATGTAAATGATAATAATGACGAGGTAAATATTCATTTATTTT
TTCAATTGTACAGGGTTTCCTGAAAAGGCCTATATGTCAAAACATGAGGA
CAAGTAGGAAAGTAGAACATAATTTTGTTTATAATGTCAAAAATTAATAT
TTACCTGGTTCAATTATACTAATGCAAATGTTAATAACTCTTTACTTCGC
TTGTTCAAACAAGAATATTGTTTTTTTTTCATGTAATAAATATTTCAGGG
AATATATTTTAGTTAGATAATCATTTTTTCGTTTAACTGTATAATACTCA
AGTCAAATGGATTTGACGAAAAATAAGCACATTATATTAGCAAATCAGTG
AGCTTTGGACATTGGGCATTGTTTTGGGTTTACTTGGGAAGGTTCATTTT
TTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGTAGATATCAGATGTCTTAGATTTATATCATGTAAAGAATCAT
AAACTACTACAACAATCGCTTCACTTTAATCCAATCCAACAATTTGTACA
AAACAAATTTGTTGTCAAAGTGATTTAACAGTATACAAGTAAAAATACAG
TCCAGATATCAACAGTCCCATGTTTCGACCAACCGTCCAAAGTTAGAGCA
GTTGACGGTAGATGAAAAGATTTGACTCATACCAACCTTGAAAGCTAATT
TGAAGAACAACACTGTACAAGTAAAAGTAATCTAAGGGTGAGAAGACGGC
AACCTAGATCTGCGCACCACTAGATAGGCTTTTTCTCAGAAATTTTGTTG
GAGCTTGAGACTGACCCACATGTGCATCCGGAATAATTTTTAATTTGGTG
TGTAATTAAAGCATAGAAAATGGAAATGCTAGCTCAGTAATTGATCAACA
AATTTTGGTCCATTGATTAGCTGGTTTTTGCACGTTATTAGCAAAGGATC
ACTTTATTTTGTTTCAGTCTTTCAAATTCAAATTTTATTTTTGTCTTGTG
ATCTTCAACTTGATTTTGGTTTCTTTCATTCTAGGTCAATTTAAATCATG
GTACTTTCGAAAAGTACCTTTATTCTTGGTAATTTTTCATAAATTCCCTC
TTAGAGCCTTTTTTTCCCTGTTGCAAAAGCTTTTTGGTCCAAATTAAATC
CAAACCAAAAATTCTTCTTTCAGACCAGGTTTATTATTTAATTTATATTG
TTTTACCCTCTTTACTTTTCTTGTTTTATAGTTTGATGTGGGAAATCTCA
AAGGACAAGTGATCGTTCCAAATGGAGTGATTAGTATTGGTGATGTACAT
GATAATAATGACGAGGTAAATATTCATTAATTTTTAAATTGTATAGGGTT
TCCTGAAAAGGCCTATGTGTCAAAACATGAGGACAAGTAGGAAAGTAGAA
CATAATTCAGGCTTTATCATTTGAAAACTCTGGGCGTGTGGTCAATCACA
CTCCTAAAACCTTAATTTTTGTTATTTAGACGTGTGATAAGGAGTGCTAT
GTACAACTTTTAGTAGTGGAATCTAAATTTATGGGGTGTGATTGATCGCA
CTCCTTAGGGATTTTAGATGTGTGCGGAGGTGTGCGCGTGCTATCGCACG
CCTTAAATGATGCAGCCTGATAATTGTGTTTATAATGTCAAAAATTAATA
TTTACGTGGTTCAATTATACTAATGCAAATGTTAATAACTCTTTACTTCG
CTTGTTCAAACAAGAATATTGTTGTTTTTTTCATGTAATAAATATTTCAG
GGAATATATTTTAGTTAGATAATCATTTTTTCGTTTAACTGTATAATACT
CAAGTCAAATGGATTTGACGAAAAATAAGCACATTATATTAGCATATCAG
TGAGCTTTGGACATTGGGCATTGTTTTGGGTTTACTTGGGAAGGTTCATT
TTTTTTCATTTTAAATGACACAATTTTTTTCAGAAAAATAAGCAAATCAC
AAGCATCATTCGAGCTCGAAGCCAAAATATAGCTTAACGTGTTTTCCAGA
AAGATTGTTTGCTATCGTATTTTACCAGTAAATTGTTTCACTTTTCCACT
CAATAAAACGAATAAGTCTTACTTTACAACTTACACTATGTTTCTTTTAT
TACAGACAGCTGACGATGGGAATGGGATGCTTTGGAACATTGAAGCTACG
GAAAGTAAAGCTCAAAAGGTGCCTATACAGTGTGTCCCGAAAAACTGTAT
TTTTATGTATATAAAGTAAAATCCTCAAAATTCATTATCTAAACTCTGGG
CTTCGATTAATTGAAAAAAAATTACACTTCTCTGTTCAATCAATAGATGT
TCAATTCCCAAGACGATTGATTTATTTGTAGTTCTGTGTTACTGGAAAAA
CAGAGGGGAATACATTCTTTGTTTTATGACTTTTGTCCAAAATTTTTTTT
CAATTTTTTCTCAATTTTTTCTTTAGAATATGAACGTGATGCTACCGAAA
ATTGAAAGCAAGAAATATGAATTAGGTTAGAATGGTTTAGTGCAATCCAA
AATTTCGAATTCAAATTACGAATTCAAATTACGGATGACTACATTTGGTT
TGAATTAACAAACCCCCCCCCCCTTTTTGAAGTTTTAATGGGGTCCATCC
TTAAAGAAATTATTTTANGCCATACAGTGTGTCCCGGAAAACTGTATTTT
TATGTATATAAAGTAATATCCTCAAAACTCATCATCTAAACTGCGCTTCG
ATTAATTGAAAAAAGATTATACACTTCTCTGTTCAATCAATAGATTTTCA
ATTCCCAAGACGATTGATTTATTTGTTGTTTCTGTGTTACTGGAAAAACA
GAGCCGGGAATACATTCTTTGTTTTATGACTTTTGTCAAAAAATTTTTAT
CAATTTTTTCTTTAGAATATGAACGTGATGCTACCGAAAATTGAAAGCAA
GAAATATGAACTAGGTTAGAATGGTTTAGTGTAATCCAAAATTTCGAATT
TAAATTACGAATGACTACATTTGGTTTGAATTAACGAGGGAGGGTTTTTT
GAAGTTTTAATGATGGACCCCTTAAAGAAATTATTTTACATCTTTAACAG
TTCAAGGACACTTTCTATCCAATAAGGAGCTCATGCGAAGGTTTTTGTAT
GTCGAAAATCCTAAATCATGTGTGACGATTCTGCTTTAACTTAACTCTTT
TTTACTATAATCCCTTTTTTACCTCTTTATAACACAAAAAGATTGTAGCC
CTAAAATAAAGGTTCTGGGAGAAAAATTTATTACTCAATTAAACAAAATG
AAATGAATTCCATCGTATCTTCTCATACATCACCAGGCCCAAATATTTCA
TGTCAATTGGAAGTTTACAAGTCGTTCAATGTTCCAGCAATTAAATATCC
GAAAGTTAGTAAGAAGATCAAGAAACTACACAGGCCCGATGACTTACCTG
TTAGATGGGAACCCTTTGGCGCTAGTAAGTTTATGCCTTTTTTTTCAATT
ACAGGAGATTTTCTATAACTCGAATGTCTTCTGGAACAAGTTATCTGGCT
ATGGAACAGTTATTATTATATTTTCATAACTCGAAAAAAATTTGCTCCGC
TGTATTTTCAGATTTCTCACTTTTATTTGAGCTCTAGTATCTTAATGTCT
TAAACGGTTGGATTTGTTTGAGATTTGGCTTTCTTTTCCCTTGGGTAAAT
GAATCCTTAATCCTTTTTATTTTGTAAATTTTTGTCTGGTCTGGAACGAG
TTCAAGCGATAAAACAAGAATAAGATTCTTTAGTGCGCATGCGATGTACC
CGGAGAAATTCAATATTCAAAGCAAGATCAGTGCGTATATCCCCAAGAGT
AGAAGTTTTACGCTCGAAACGAAGGAAGATATGACGTAGCCTAGATTCTT
CTGAAATTTCTATACTTTAAGATTTTGCGGCATCAATTACTTTACTTGGA
TTAAGGAGAAAAATTCGAAACACAAAACCCATATTTCTATTTCTAATTGT
ATTTACAGATGCACCATTGACCGACAAAGAATCGAACACCTTCGCCTATA
AGAAAAATAAATCGAACGAAGCAGAGAAACGGATAACTGAAATTGCTCGG
TCAGAAGAGTTAGTTGAAAAACCACCCAAGAAAAAGAAGAAACGAAAGTC
TAAAATACAAGATGAAGATGATAATGAAATAGAGACAAATAACAGAAAAC
ATTCTAAAGGGGATGGAGACGAAGAGGAGAGTAGCTCTCCGGTTAAAAAG
AAGAAGAAAAAGAAGAAAAATAAAGACTGAAGTATAATTGAAAATTGAAA
TTATTGCTTACAAACCTCACATAGACTTAAAAGTAATAATTTAAAACTCG
TGGAATTGAATCACAACACTTAAGTTTTAAAGCAGATTTTCAAATAGAAT
CAACCAGTTGACTATATGGAATGCTTTAGTTTGGAAACATTGCTATGGAA
ACTAAAGACTATATACAACCATAAATACGTGATTTGGAAAAACTGAGGAC
CTGTGGATTGTTTTATGATTGTACAGTAGCGTAGACAGGGCTGTTGCAAA
ATTTGTGTAGGAGAGCAGATATTTATGTCACATTGATTATCTATTCATGT
TATAAAAAGATAATTACTTTGTCATGAAATATCAGCTCTCCCCTAAACAA
ATTACCCTGTCTACGCTACTGTTGTATAAAGAGACAATGTGCTTTGTCCT
GTATAACATTCAGAGAAAAGGCTCGTTATTTTGAATAGTATACTACTATT
TTACAGGAATAGTACAGATTCCATGTTGATATAATTTTTCCGTATTTATC
ATCATTACCCTTTTGTCAATCAACATTGTTTTAGGGGTTGTTCCGAGATG
AAGATACACAGGAAGGGGCACTTTCACCTTTGTACACTCCTCCTTTGTTT
TGATCTCATAACAAATCTGGCCTAATTGTTCCGCAAAAAAAAATCAAAAA
AA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00028381TCONS_00028381Clytia hemisphaericatranscript
TCONS_00028380TCONS_00028380Clytia hemisphaericatranscript
TCONS_00028379TCONS_00028379Clytia hemisphaericatranscript
TCONS_00028378TCONS_00028378Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00028379-proteinTCONS_00028379-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000675supercontigsc0000675:20428..28979 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.57	28.82	13.79	12.6	48.49	38.18	23.41	23.68	14.49	11.81	8.38	8.36	7.53	7.74	9.34	7.42	10.56	8.67	1.21	2.64	16.88	15.09	21.78	19.35	17.31	20.12	3.75	2.97	9.88	13.79