XLOC_013401 (gene) - C. hemisphaerica

Overview
NameXLOC_013401
Unique NameXLOC_013401
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000463:237750..247637+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_013401 ID=XLOC_013401|Name=XLOC_013401|organism=Clytia hemisphaerica|type=gene|length=9888bp|location=Sequence derived from alignment at sc0000463:237750..247637+ (Clytia hemisphaerica)
attatcaacggtttacaatagaaaagacaaagaagcaatccgctaaggaa
ttctcgtccttcatccagctccctGATGCAACAGGAATGGAAATCTCCAT
CGACAAATGTGTATCATATTGCCAAGAAATACACTTGGTTTTGAAACAGC
AGATGTACTCTCTTCAACTCGATATTTGGTTTTGACACAGCAGACGTACT
CTCTTCAACTCGATATTTTACTATCacaatgataaaaagaaaaccaaacT
GGGCACGACAAGTCAAAGTCAAACATTGTTGACCTATTTGTCGATTTGTC
AGCAAAGCAGATCAAAAGGATCCTGGTAAGTCATTTCTACCcaaccttct
tttttttcagaacgAGTCTCTCTCCAGAGTACAATATTCTGTTTCTCTTA
TATTAGCATAACGTTTTTAAGCATACTGAACTCCTGGACTTCgtcaaaaa
ataagcatatcacAAGCATATCAGTGAGCTTTGGTCATTTGTCATTCAtt
gaaatttcaagatttttcataattttaacaAGCagcatgctgaatggacc
tacctaatgatgaaagttagttattgcattgatagcaatgcgaaaagaaa
aatgaaaaaaatcagtcagaaaatatagcatttagcgaaaatacacaaca
caataaattcatcattgattgttgatgNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNtgtagggaaaaaataaataggaagttctg
gtcgcaaaaatcagttttattgacaattgaatcatgcttgatggtgagca
ttgttatcaataatgtttttccggcatatttccgccattttcggccggaa
aattttttttttcgaaaatcgggctccgttacattttgggcattgccatt
ttgcatcattgtgcaaaaaattagaaaaaactaatgagccaatcccgaga
aaagctggcaacagacgaacgaacggacgaacgaacgaacgaacgaacga
acggacaagggttaatttaaaggactaccttgggtaggtccaaaaagtat
ttaCACTAAAATAATACCAAATTATTAATGGTCAAATTTTAACCTTTTGA
AGCTCTTTAAGTAattctaatacaataatgaccggtttttcgggctgtac
tgaaaatattgccctcggtcaacgcaacaacctcgtaAGCaagtcattat
tgtattagaatTACTTAAATAGCTTCAAAAGGTTACAATTGGCGATAAAC
CAAgatataactgaaaattcagtTCGATCACCTGACCCGGGTGGTGTTCG
TGGTGTTTTATAGACCAGACCATTAAACAAAAACAGGTTTAAAGGCCCTA
ATGAGGAATTTGGGTGACTAGCGTTCAGCGGAACTGCAAAACTTCAAATC
AGCAACTTTATGTAGTTGATATTTTAAAGACCGGTTCGTGTTTTACACAA
AATAGTGAATAACTGGATAACCACTTTTCCgactggaaaaaaaattgaat
gaatatagggggtggaggatataacattttctggtaatttaattgaaatt
gaCATTGTGACTTTCAatcccccggacagcaggtctagcCCCCCCCCCCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccccc
ccccccggacaagcatcagtcgaccccctggacattcaaagttaccctca
aacagagcaactTTACCCGCCGgaaaaggcaaattttgtagatttttcac
taccccctggacactatatcctccacccccatgtgcGGACATTTGATCGA
AAAACTATCCGGTTGTTTTCTTGTCAGTAAAATTAATCTCGAACGTTGTC
ATGGCGTTGTCATGGANATTTGACCGAAAAACTCTACGGTTGTTTTCTTG
TCAGTAAAATTAATCTCGAACGTTGTCATGGATTGAGTTTACTGTTTATA
GgctgccattttgaaattcgaaacTCAAAACTCGCTTTTAGAATTCTTGG
CATGTTAGATCAGATGTGCTTTAAACAAATAGACTCTACGGGAAAGATTA
TTGACTCTGTATAAGCAAGTCACGAAATTGGACTCTAAGGCACTCCGCCG
TAGAGGGGCCGAATATCTCACCCGCTGTTACAATGCTTTTCTCTGTTTAC
TCGACAAACTTTGTAAGTAAGCGCTAAAATAAACATGAAACAATCTAATG
AATTTTCTTAGTGCCTTTCCTTCCTTAAGTGGTGTGACGTGAAAAGTTTT
TATAGCATGATGACTTACTTGTTAACAAGAAAAATTTACAACTAAATGAA
GTGCgatttttgtttggtttgaaaTTTCAACGATTTTCGTGGAATAAAAA
TGGATTGGATGAGAACTTTTGTCAGTTTCTTCCTTTTGTTAGGTATGTTG
GTGTTTGAAATTGTAGGAAATCAAATCTGACCTAAACCTTGATGAGCGTA
GTCTGATTCCGACCAGGCTCAAACTACCGCAATATCAAGATACCGCCATA
TTTATCTCTGGTTTAAACGGCCCCCTAAACGGCCCCCTTTTCGCTCTGCC
TATTTGAATTGTATATTGAAGTCAGTAGAAAGTTCAAAAGTCGATGCGAA
GACTTCTTTTAACCTTATCAAGCTAAGATCTTAACTgccaactttctgcc
cacttttgcctactctaacaacTAGTAAAGGCAGCACAGAAAGTTTGCCG
TTTAAACTAGAGCTTGTCGTTTTAGGCACTTTACGGATTCCTCCACTTTT
GAATTTGCTGTTGCGGGTCACACCCTCCTTATAACGTATTTGATTCATCG
CAATCAGGTTTATCAAAGATCTGTTGATAACGATATATCTTCAGTCGATT
TATTCCGCGAATGTGGAGTTTTTGTTATGAAGTCGTAAGATTTCTTGGAT
AACGAAACGAAGTCTCAAAGTTTACAGGTGGTGTCTCCAAGTTTTCTATA
TATATATCGACTAATTCTCGAGGTCAATACTCTGATCATCAAGACTTTTC
TTCCTTTACCCCTTTATACTCAATATTCTTCTATATACAAACTTTCATCA
TCCAATCTTCCTGTGTCCAGGTATCATCCAAGAAGTCACAGCGAGCGATC
CGTACATCTCTATACAGCTTCAAACAAcgtggaagaaattttgtccaTCT
TTGGGAATCTTTAGAAATGAATTGTCAAAACTTACGGAGATAAAAGTCAA
CTTGATAGTGGTCATCAACGCGGACCAAAACTGTTTGGATGGTGGAGATA
ACGACAAAAAGGTAGAATTCGCTTCTCCGCCTAACTATACTCTCTGAGAT
AAAATGGCTCTATTATTTGAGAACAATAGGatactaagcataatgcgagc
ctgatataggggttgacacttgcttataaaaaaaacatgtaccgaGTTTA
TTGTTCTGAATCTTTTGGGGGTCCATCGATTATACAATGCATTTAAAAGT
AAACACTTTGCGTAAAAGTTCACGTTGTATCTTTTCCGCCTCTCTACAGG
TGTTTGCTTACGTTAACGTGATGCGGGATGACGGGACAACGGAAGTCAGT
TCTGAAGACACCATAAAAGTCAGAGATGTAatggaacgaaaaaaaaatat
cgCAAGTTTCAAGGTAATAATGAATTCAAATATTTGCGAGTTATTAAAAG
GCTGAAAAGGCTGTCTTGAGACCATTGACGTGTCTACAAGTGGTCTCCtc
ccaaaataaataaaagaaactGACTGAGTGGCGGGTAAGCTTTATGAAAA
AAACCTTTATATCCaagccaaattaaatccccactATGTATTTGAGCAAC
CGtacatttcaaaattaaagtctgttaCTCATCTGGTATTACTTTTAGAT
TAATTTGGACTTTCAAATACACACTCATATGAGTTTCTTTCTTGAAATGC
TTTAGGTTGTCAGTGTGAATGCGCACAACGTAGCTTCCAAAGCTTTCCAT
TTCACAGAAGGAACTATTCTCCTTATCATCGGCATTGTATTGGGAATCTA
TTTGATTGGTTATTTCCTAATCGTAAGTTCACTTGATTGGCTACTTTCTA
ATCGTAAGTTCACTTGATTGGCTACTTCCTAATCGTAAGTTCATTTGATT
GGCTACTTTCTAATCGTAAGTTGACTTGATTGGCTACTTCCTAATCGTAA
GTTGACTTGATTGGCTACTTCCTAATCGTAAGTTCACTTGATTGGCTACT
TCCTAATCGTAAGTTCATTTGATTGGCTACTTCCTAATCGTAAGTTCACT
TGATTGGCTACTTCCTAATCGTAAGTTCATTTGATTGGCTACTTCCTAAT
CGTAAGTTCACTTGATTGGCTACTTCCTAATCGTAAGTTCACTTGATTGG
CTACTTCCTAATCGTAAGTTCACTTGATTGGCTACTTCCCAAACTCTTAC
CCAGCCCCTTGATCACTGTCTTACGGTTCTGATAAGAAAGTCTCTTAAAA
CTCAAACCTCTATAAATCAAATGTtgacaatgccttataaaccttactct
aaCTCGaaatctccttaactcgaaatctccttaactcgaaatttccCTAA
CTGGAACAAATTTGTCGCAATAGAAATAACGCGGCAAGAAGGTCAGGAGA
GCTGGCAAAGAATGCAGTTTTTTATCGAGCACTATAGAATATAAATAAGC
TTTTCTTTATTTCCATTTCAGCTTGGCGTTCAATCATACAGTTCAAGTGA
TCCGAAAGACAAACCTCTATCGTTCATTCTGGCCGCTGAAAATAAACATT
TCGTAGATGGGATAAAAAGACACAAGTCTACGCAATTCAATTTCTCAAGA
GTTTCCGACAAGAAAGTGCACATTATAGAAGACGTCCCTGCATCGTGATG
GAATAAAATGCTTTTGGAGAAAACTAGTCTTTTCCGGGAAAGTCGTTTCC
GGAGTCTGCCTGATCCGCTGAATCAAAGTTCTGCAAATGTTAATACTGTT
TTggttaggctgcacgcatccacTCTGGTATGCTTTGATATATAGGAAAT
GCTCGTCGTGTACacgtgttttttttaagaaacacacttttaagaaacat
gaggctcagaatgcctaaaaactaagaaacatctaagaaacatgttgagg
ctgagaatgagaaaatagcatttttgaattcgttttttttaagatccttc
caatcaaggttccagaaatatacatacataacagttagaaacacttgaga
aagtcagaaaatcaatatagaagataggaaagtactgtagattagtcaat
tagactattgtattatcgacatgTGCGCcctttaagcttgacaaagttta
gaaacatgtaagaaacatttgaggctcaaaaggccgatttcttaagaaac
attgaagCTGCTTGggaaaactagtttcttaaaaaaaaaaaacgtctaTA
ATAGTCCTGTCCGAGAATTACCCCTGTCTCGATGTTTTAGAGCTTGAGAA
GCTTGAGTagcttgattagtaagttttaatgagaaatctttaaattttat
taaatttgaaggGCTAGAGGTTCTgaacatttttaagaaaattgaaacag
gttgTCCAAAATTTAGGGTAACTTTCAGACTGGGATTTTATATACGATGA
GCGTCCCCTGTATATCAAAGCATATTAGAGATGACACGTGCAGCCTATAT
TTTGGTAGACATTTCGGGAGCCAATCGTTGACAGATCACGTGCCATCGGG
AGGAGGCTTCTAAACATCAACATGTGCTGACGAGATCTTTTTTGTTTGGA
TTCTGTTTTACACTCGAATACTTATGATTGTTTCACACTTGAATACTTAT
GATGAACATTTATACCAGTGTGATTAATTacgtgcgtcccgtgccctcgt
gccctcgtgggtcgtgccttcgtgcctcgtgcgtcccgtgccctcgtgcc
ttcgtgccctcgtgggtagttcgtgggtcctgaaaaaagttacgtgggtc
ctgaaaaaaattacgtgggtcctgaaaaaaattacgtgggtcctgaaaaa
aattacgtgggtcctgaaaaaaattacgtgggtcctgaaaaaaattacgt
gggtcctgaaaaaaattacgtgggtcctgaaaaaaattacgtgggtcctg
aaaaaaattacgtgggtcctgaaaaaaattacgtgggtcctgaaaaaaat
tacatgggtcctgaaaaaaattacgtgggtcctaaaaaaaattacgtggg
tcctgaaaaaaattacgtgggtcctaaaaaaaattacgtgggtcctgaaa
aaaattatgtgggtcctaaaaaaaattacctggGTCCTGAAGATTTGATT
TTGTGGGTCCGGAAAATGatttcgtgggtccagaaaatGATTTCGTGGGT
TCAGTAGTCACGTGTGTCCTTGTAATTGTGCGGAATCTTTTTTGGAGAAT
TTGTTGGGATAAATTTGAGAGTTTAATCGGATATTGTTCTCCTTAAAGCT
ATACTTTGAAACAACATACGATCTCGCCAAAATGAAAACACCATTTTCga
atacaaatttccaaaaataattgacattgaatattaaaaatttttatact
AGGGAAACATGGCACTAACAGactgtctttgtgcaaaatttcaagttgta
ttTTAGTGTGATGCTTGAGATATGAGAGGATTTCTAATGCCAAACTTCAA
TTAAAATATTAAACTAgtacatagcttacactaacatgccaccgcagcaa
tataANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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gacccacgagggcacgaaggcacgagggcacgggacgcacgaggcacgaa
ggcacgacccacgagggcacgggacgcacgtAATTAATCACACTCACATT
TATAGTGAGATGTTTAGAGACGATTTATCGCCCATTAAAgtttaagaaaa
tgaaaaacaattgaTGACGCCAATCACCGAagctttaaatattttcttac
tgTGTAAAATTCCTTAATGGTATGATTTCCAAACCCCTTTGGATGAATGT
CACGTTGCTGAAATTTTGTTTGTTCAACTCAATAATCGAACGAAATCTTT
CGAAATTTTTCCAGGGGAGGAATGCTCCAAAATCATTTGAGGAATCTTAA
ATATTCAGTAAATAGGGAAGTTTAAATCTTTTAGTTCAAAACTCCAGTAG
AATAACTTATCAATGACAcccatgtgtcacagacccgcctGAAAGTTCAC
CCAAGGTTTTGTCCCCGGTTGAAAAGATACAACACCTA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00023846TCONS_00023846Clytia hemisphaericatranscript
TCONS_00023847TCONS_00023847Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00023847-proteinTCONS_00023847-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000463supercontigsc0000463:237750..247637 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.52	0.38	0.48	0.48	4.89	4.34	4.31	4.93	2.47	3.67	2.29	2.53	6.69	7.74	0.96	1.12	3.1	3.6	8.32	6.43	4.1	4.56	0.96	1.38	6.7	9.04	0.33	0.79	1.78	1.55