XLOC_013248 (gene) - C. hemisphaerica

Overview
NameXLOC_013248
Unique NameXLOC_013248
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000456:238608..248944+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_013248 ID=XLOC_013248|Name=XLOC_013248|organism=Clytia hemisphaerica|type=gene|length=10337bp|location=Sequence derived from alignment at sc0000456:238608..248944+ (Clytia hemisphaerica)
cttttccattttcaccctgaaaagtggccaaaatgactaaaagtagacaa
aaaaaattgaaattttctaacatttccaccctgaaatttgtcaaaaacta
ccaaaaccaaaagtcgaccctgcCAGAtaaacatcttgaaaattagtaaa
tttgtgACCCTTTTATTTTAATTGTGGGACCCTTTTTAATTTacaccctg
tcagatatcttcagagcctaaaaaagggaccctgatcaccctgaccagcg
gcacgtccccgtacccaaaTTTGCCTATGTCGTAAGTGCCCCTGGCTTTT
TTCGCTAGATGATGAGCAGAAGTCTAGTTTCATGAAGGCctctttcattc
tatttctccCGCCCAATTTCACACCTTTTAGTGTCACAACCGCCCCAATT
TGAATTAACTTTTAGTCATTAGCGCAATCCTCAGCTGTTTttgtattgaa
ttttttttgtgtcgTGCGCATTTTATGGAgatttctttttgttgtttttt
atattgCATACCCTTGTTCACacatttgttttgtttatttaatgACCTGA
CATTGGAAATAATATTACGACCTTCTCCAGTTTCAAGTATTTGCGCAAGT
TCACGGTAAGTTCGTATTATTTCTCAATCtatttttatgataaaaatgat
AACACAAAGCTCAAAGAAAGAAGGGAAGGGAAAGAAGGCAAATTGTATGA
TGTATGAAAGACTGTTGGTCTGGTTTTGTAGAGCTTGCAGCTTATTTCTT
TGTAAATTGTTTGCTAATTTGTCAATATAGACAGCACAGGCTGATGGCAG
ACAAAAAAGGTTATtcaaagatattttcagttctaatccaaggtagaaca
aaccacagatatctaagcccgaagggctagataggcaactttaagctttc
tccagcaaaaaaagtgaagctaaaatttgactttttattgagattcgatt
gcgctcgacaatcgaatttcaatcggtcgattgcgttcgatttggttcga
ctggtttaatcgtcgattccgttcgattgagatcgtctggactaGTATCT
GActtttagcaagcttttccctctccagacggcaaaacGGCCAGTTTTAA
AGCActgtttctaccaaaacggacggacggacagacagacaggcggaaag
ttgcaaatgaaaggccctatcgctagcgtTGCTGGGCCAATAATAGTTAT
AAAGAATAATAGATAATAAAGAATAATTAATATACCCAGACATCTGACCA
CAAGGAGAGCAAGtgttgaaaatataaataaaataaagatgaaacataaa
aaaggactagtatttttataattaaccatttttcatttatctATCAGGAA
ACTATAGTTGTCCCTTAGGCAGTGTAGTAAGAAACTATGGGTCAATCTAG
AGAAGTGAATACTTACACTTACTCTACAAAAAATATAGGTATTTAGGTGG
AATTTGAGGCTGAAACCTTTTGTGTTtaaagtactttaggcgtactttcg
caagcagaaacttttgcaaggatgaaaaatcgcgaaatgcatgacattta
ctttcgcgaatttgatgaaaaaatgtttttcgcgagcataaacttttggg
aatcgttggataaaaatgaaaattttctaacgaaaattgccttaaaagtg
aaaaatattccttaaatctgATAAAGACAGTTGCTCTTAAACTTTTAAAA
GGCATTAAAGGATAAAAATATGCCgaaaattcgatatttattacgatttc
gaggttttatagatttccactttttttgagaatttttcgcgggcataaac
tttcgcgaattgccctattaagaattttcaaatacatttacttttgcaaa
aaaggtcaaaatttgcaaaaatcgcgaaagtttctgctcgcaaaagtttg
tacgcctaaagtacactGTTTATGGCTTTCTTTCCCAACAGTGATGTTTT
TTAGAaaccagttttcagttttttacaAGGAAGTGAAAAAATGCCCTATT
AGCTATTTACCCctcaaaacctacaaaatggtttttctcaaATAACGTCA
TAAAATAGTCcttttgttcttaaattttgaatAGTGATTCGCTGCAAAGT
TACAAATGTTATGATTAGATcattggtacctaaatattttcaaaactgca
tgttaaaatcaaattacaccttaaaacctacactattacaccttaaaacc
tacaaacattgACCCCTTGATCACAACTTGCTGAAACATTAAAATTGCAA
TTTAGATGCTGAACCTTGATTAAATCGATCAAATACTTGCTATAAATCCA
ttcccaaaacaaaacaatatttgtaataagtatttcatgcccataatgca
attgcaCCTGTTTTGTCAAAAACAGCTTTGAAGGGGCAAACTTTTATTGA
CTTCGTTTTTGACATAtgttaatgtttttctaaatctccatcaaattttt
GGTATGCAATACgaccatgttttgagaaagttATTTTATTGTCCACTAAC
CTTAAATTCAATTGCGTACTAGGtctgaaaaacttgattttttaaaggca
tctttgatgaaattttgaataatttcgaatttttcgagactttgcaatat
tgaaattcttgaaattaggtattttatgaaagtgaATTATATAcaatact
agccggtacccggcgtcgcacgccggttaagctgtagcgcttaacgcact
aaaagtcctttggatgttgaagctggcttaaaaaatgatcagatgaataa
aaagatatcttcaaagtttgactctaaccctcccccggagatctttttct
cgcttcgcttgcattaaatacgccgtccagttttcgacaatttgagaaaa
tgtcatggtaaagaggagtgaaatatagaaatgacaattctttaggANNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNaatacgatcgttaaatacatttgaaa
acatttcaaacaaaaggaAAGAGAAAAGCAGGATCGGGCaaagctgggca
gaaattaaaattactacggctattaatacaTAGATTAGATTAAGTTTTGT
AGCTAAGGAAGAGAGTCTAAAGTGCAACTTTGtaggggtatgtggtttta
agggatATCCACTGgtaatagaaaaattttcaagcagtttttttGAAGAA
TCAAAACTTAGTTTTTACTTTTAAGTCTTCTTTTCCCATTTTAATATCTA
GAAGAAATTCCAGCTCAAATAAACCAAGAGTATAGAGGCTTCAATCGTTT
GTGAAGGAGAAAACgttttaaaataattataaacacAAAGAAACTTTGAA
ACAAATGGTTTCCTTAATATAAAAAGGTGGAGGTAAATTCAAAAAAGTGG
AAGGGGAGAATGGTCGaattttgacaatatttgaGCGTACATAATTGTTG
AATCGTCCcatataaaatatttaaaatccaaAGCCAAGTTTTGATCCAAA
ACTGTTTCTTGATCTTAAACTTCtatcattttaaaaattatgattgCTCT
TGtgtaggaaaataaaaaaagaaatgactGCAGTGATTGCTGGAGATTTC
CAGTCATCAATTAATAATGATGAATCAGATGACTTGCCCTTAGGACAGTC
AGAACGTGCAGTCTACTTGTCAAACCACTCTATCAAGTTAAAGAAAACAC
TTGGATTTTCTCATGGCTTTTCACTCATTGTTGGGCTCATTTTGGGTAGT
GGTGTCTTTATATCCCCTGGTTTAGTGGCAAAGGATACCAGTTCTCCAGG
AATGGAACTTGTCATGTGGGCAGCTGCTGGCATAATTGCATTACTTGGTG
CTTTATGTTATTGTGAGATTGGCTGTATGTTCAAAATGTCTGGTGGAAAT
TATGcaaacattttcaatatttatggAGATGCACCAGCTTTCCTGACAGC
TTGGGCAACATGCTTAGTAATCGATCCTTCTAGTGTTTCAGCAATTGCTT
TAACAATTGGAACATATTTTGTAAAACCCTTCTATGCAACAGATGCTGAG
GGTGAAATACCTGCAAAATTGATTGCTTTTGGGCTTATCATCCTCTGCTT
CATTATCAATAGTTCCAGTGCCAAAATAACAAATGTGATCCAAAGAATTT
TATCTGTTATTCAAATCTTGTCAGTTGTTTTTGTGATTGTCATCGGAATA
TGGCAACTGGCTAAAAACAAAGCTGCAAACTTTCATGATATGTTTTCAGG
AACGATCGTTGATAAACACAGCCCGTTGCATATTGGGATTGCACTGTTTG
GTGCATTATGGTCCTATGANCGTCCcatataaaatatttaaaatccaaAG
CCAAGTTTTGATCCAAAACTGTTTCTTGATCTTAAACTTCtatcatttta
aaaattatgattgCTCTTGtgtaggaaaataaaaaaagaaatgactGCAG
TGATTGCTGGAGATTTCCAGTCATCAATTAATAATGATGAATCAGATGAC
TTGCCCTTAGGACAGTCAGAACGTGCAGTCTACTTGTCAAACCACTCTAT
CAAGTTAAAGAAAACACTTGGATTTTCTCATGGCTTTTCACTCATTGTTG
GGCTCATTTTGGGTAGTGGTGTCTTTATATCCCCTGGTTTAGTGGCAAAG
GATACCAGTTCTCCAGGAATGGAACTTGTCATGTGGGCAGCTGCTGGCAT
AATTGCATTACTTGGTGCTTTATGTTATTGTGAGATTGGCTGTATGTTCA
AAATGTCTGGTGGAAATTATGcaaacattttcaatatttatggAGATGCA
CCAGCTTTCCTGACAGCTTGGGCAACATGCTTAGTAATCGATCCTTCTAG
TGTTTCAGCAATTGCTTTAACAATTGGAACATATTTTGTAAAACCCTTCT
ATGCAACAGATGCTGAGGGTGAAATACCTGCAAAATTGATTGCTTTTGGG
CTTATCATCCTCTGCTTCATTATCAATAGTTCCAGTGCCAAAATAACAAA
TGTGATCCAAAGAATTTTATCTGTTATTCAAATCTTGTCAGTTGTTTTTG
TGATTGTCATTGGAATATGGCAACTGGCTAAAAACAAAGCTGCGAACTTT
CATGATATGTTTTCAGGAACGATCGTTGATAAACACAGCCCGTTGCATAT
TGGGATTGCACTGTTTGGTGCATTATGGTCCTATGATGGATGGGCACAGA
TGAGTAATGTTATTGAGGAAATCGACAACGTGGAAAGAAATTTACTTTTG
ATTATAGTCACTGGAAtaccttttgttatattttgCTACATCATGGcaaa
catttcatttttatcaGTATTGACACATCATCAGATGGGCTCTTCAGATG
CTGTAGCAATTGACTTCATTGAAAACGCACTAGGGATCAAAACTTCATAT
CTTATGATGGTGTTAGTTGCATTATCAGCTTTTGGGACATTAAATGGTAC
CTTTTTTGCTTGTCCTCGTTTGACAATGTCTGCTGCACGTGAAGGTCATA
TGCCTTTCATTTTCTCTCTACTTTATAAGAGAAATGAACTACCGNCACGT
GAAGGTCATATGCCTTCCATTTTCTCACTACTTTACAAGAGAAATGAACT
ACCGGTTCCTGCTTCAACCCTTATTCTGGTTATATCATCATTAATGTTGT
TACCTAAAGCAAGCAATCTCAACACCCTGATCTTACTTTTCAGTCAAGCT
CAATGGGTCATTTACACAGCTTCTATCTTTGGTGTGATCATATTGAGGTA
TCGGAGACCAAACCTTGTGAGACCTTTTAAAGTCTTTATTGGTGTGCCAA
TCCTTATCTCATTGATCGGTGTTTTTCTTGTCATTATGCCCTTTTTCAGA
GACTTTTGGTTATCTTTGGCAATGGTGGGCTTTATATTATTAGGAATTCC
TGTCTATCTTGTATGTGTCAAATATGCACCTCGACAGCCTATATGCTGCT
TAAACTTCATGGATGCTTTGAACATTAAAGTTCAAAGTCGCTTCAATTTT
GTACCTTGCTCGAAAGCGTCTTAAATATGTAATAAATATCTAGTAAAGTT
GACGATAGTAAaaaagattttagattttttaacaaaataatcataaaatT
ACTtgaataatatatatttttatatcttttataTCATAACCTTAATATAT
ATTAAAAATACCGAGATTCCTAAAACGATCATTTATGTATTGCAACCACC
AAGAAATAGACTTTCATGAAGCTTTTAAAAGTACTAAAAATTACACAagt
gtattttttaatgtttccaaCGCCTGGGGGCTGGGCACTCAATTTCTAAA
TGACTGCATGTGCCGCCATTTCTAAACGACGCAATGTGCCgctaaaaaat
tgattttcaaaatcgGGCCGTTGCAGTGCAGCTCTTGAGCAGTGAAAatg
tacccttacagtgcatttttccgAACTTTTtttacccttacagtgtagtt
tgaatTCGtgtcttattttgctgaagctaTGCCCGAAAATAACCCTGAGA
CGTCACCTGACACGATGTGTgcaaaagtaataaaaaatgtgaaataggtt
taagtcaaaattttaaagatacaTATCTTTACTGTCAGACTTACATTTCA
AGGGTCTTGAAAAACCtatccttaagggcggcacatgccgtggaTCGAAA
GTTATGAGTGCCCCTCCCCCCGGGGTTCCAACGTAAACAAAGCTTTCATC
AAGAATCTTTGGCATACGGAAGATTTACTTCTATCAAGGaactttaataa
tttttatttaagtTTCTTGGTTGGGTCTATGAATGGCGGGGGATACTACA
GATAATTCATTTGGTTCATACATATACACTTTATTTAGCTTTTTTAAACG
TATTTACAACCTTGGAAATTTTATATAATAAAAATTGATTGACATTAAAT
ATATACACTTTGATTTTAACAAACATAGGTTGGGTGTATTGTGCAAGAGT
GCCTACTATTTTAATAAGTTTTGTCAAAACACGAGGTCTGATtgccaaaa
caaagagaaacaTGAAATATAACACTTTTTGTAATTTCATCCAGATTACA
ATAAGCCCGATAACCAAAGTGCAATACGCGAGAGAAAGTTACACAATTTT
AATCGCTAGCTAGATAGGAATTTTCTCATTTGCAGTGCAATATGTGGCGA
CTTTTTTATAACAATGATactcaaaaattccaaaatataataacaattta
agaacaatgctgagcctgaaattgtgaAGTTTTAAGCAAATTTATGGTCA
GAGTATTAAAATTAGGGTCGGATCATGTTATATCCAAAAATACAGTTTGA
TGCTCGAAGTGCTATAAAAAAATCAGTAGAGCCTCAATAAGATTTACTAT
ATGAAAAAATAGTGAATCTCCCTGAATAAAATAGTGGAATTTGGTTTGCT
TGCATTTCAAAGTCTGTCTTACAACGGACATAGGATGAAGTGGCATGCTT
TCACCTCGTGTTAAAGTACATATTCGATTTCAATCTATTTTCAGAAATAT
ATTATTGTATTTACTGTATCGTTGCTTGTAAAATGCTAAGCTCTTAAatg
aaatattgagaaaaaatgCCTTGTTTTAAACAATGCTCCCAATTATTTTA
ATACCTCTTTCGCTTCCATTGAAATCTTgaataaaacatttttagaaaaa
ttcaaaatgacctGTAACATCAGGATCACATGTGACCTTCAATATTTTGT
AGAATCTTGTCTTTTCTTCGAAGAAGATTTTGGTACAGGGTCGAATacat
catttttcttttcttaacaGACAACTTCTCCCCTGAAAAGACACTGTCTC
TTTCCCTCTTTCTGAACTAATAGCCCAATTCCTGCTAATTTTTATCCTTG
ATTACAGTATGTCCGCTAATAAGTAGAGGAGAGTGCACCTATTTAGTTAA
CTAGTTGCGACAGTTGCGAAAAAGAACtctaaaatgtattttttttattt
tttcagtatGTTATGGAAACTCATATAGAAAGCCATGGCAACAGCAATGC
TGGTACCAAACGTAAACAAGGCAAACTCACTGACCAATATCCAGTTGTCA
AGAGGAACCGTTTTAATGGAATGACTGAAGAAGAAGTCATGNCACTGACC
AATATCCAGTTGTCAAGAGGAACCGATTTAATGGAATGACTGAAGAAGAA
GTCATGAAGCGGGGACTACCGGATTATTTACGAGATTCTCTAGATATTGT
GTTCGTCGGAATCAACCCTGGGTTAGCGGCCGCATACACTGGGAACTACT
ACACTGGCCCTGGTAATCATTTTTGGAAATGTCTGCACTTGTCTGGCTTT
ATAGAACAACCTATGACTGCTAAAGATGATACGCGATTATTTCGAGATTA
TAATATCGGATTTACAAACATGGTAGTACGAACTACGAAAGGGAGCAACG
ATTTATCGAAGAAGGAGCTTGAAGAGGGCGGTAAAATTCTAACCGTCAAA
ATGCAACAGTATCAACCGAAAATTGTCGTCTTTAACGGGAAAGTCAGTTA
TCaagttttttcaaagaaaaagaaattccatTTTGGTTTACAAGAGGAGA
GTGTTGAAGGGACCAACACACGTATTTGGGTGATGCCTTCGTCTTCTGCT
CGTTGCGCCCAACTTCCTAGGGCGTCTGACAAAGCGCCCTTTTTTAAAGC
TTTGAAACGATGTCGCAATTATTTGAAAGGTGAATCTAATAATGTGGTGG
ATGAACAGAAAGAATTCGTTTTCGCTGATTTGACATTAAAAGGATTTCCA
AGGAAATCTACTGTGACATCAACGTAGGGATAACAATATCTTTTATTTAT
TATATCAGTAGAGTTTTATTCTACTCATAAACCTAATGAGTATGCTTAGA
TAGGTTCAGgatatatattttaaattttaaagaaaagccTTTGATTGTTA
AAAGAAATTTGGATTGTCATGGGTAAGTACGGTAGTGTTTGTTATCCTCT
GGAATCAATTTAGTTGAAagttatttgaaaaataaatgaaatgacTTCCT
GCGGCGAAGAATTTAAACAAACTACAGCTGTTTTAAATGCCCAAACAAAG
TCCACTTTTAGTTGAATTACTAGGTATTATACTGAAATTAATTTATCCCT
AATttataatattatattttatcttttatttacGAATCCTAATTTAtact
ttaatgaaaatgtcaatttttaaattatcattttttagcGATAATTGGCA
ATATTGGCTTTTATGAAATGAATCGATTTTGAATCTTTCTTTGGAACATG
AATGTTGCTTTTAAGATATGATTGAATTTGAATCATTAGTGCCCGTACTA
CTTCCGAATCGAGGTCCTATTCCTGCAATGAAATACA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00023578TCONS_00023578Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00023578-proteinTCONS_00023578-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000456supercontigsc0000456:238608..248944 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.07	8.89	4.59	4.16	28.09	22.36	23.84	25.68	16.82	18.06	12.18	9.09	4.99	4.12	3.57	4.07	7.62	7.36	3.18	3.54	6.35	5.86	13.94	13.18	7.08	6.94	8.98	7.02	6.89	7.55