XLOC_013238 (gene) - C. hemisphaerica

Overview


Name	XLOC_013238
Unique Name	XLOC_013238
Type	gene
Organism	Clytia hemisphaerica (Jellyfish)

Sequence

The following sequences are available for this feature:

gene from alignment at sc0000456:90298..102755+

gene from alignment at sc0000456:90298..102755+

Legend: gene

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_013238 ID=XLOC_013238|Name=XLOC_013238|organism=Clytia hemisphaerica|type=gene|length=12458bp|location=Sequence derived from alignment at sc0000456:90298..102755+ (Clytia hemisphaerica)
agcaaaagtaacaaaaataatattttcgcCTTCTTTTTGGACTGTCAGAA
TGTGACAAAATAGAAATCGAATTTCGTCATATTATCAGTGTTGAAGAACG
CGATATTAAATCATGTCATAATCTTAGTTTTACCAAAGGGAAGAATCTAC
CATCAAAATGTTCGAGATACCTTGTGGGTGatgaaaaaagattgaaagtt
aGAAATTATAGATTTAAACAATATGGAGCGTTACGAAAATATGGGCCTAG
TTGGAGAAGGCTCATACGGAATGGTGTTGAAATGTAAGCATAAAGAAACA
GATCAGGTTGTGGCTATCAAAAAGTTCTTGGAGTCTGAAGATGataaaat
ggtcaaaaagaTCGCTCTAAGAGAAATCAAAATGCTAAAGGTATTattct
ttcatttcattttcattactcgtttttatgttttaaacGCAAATAAATAC
CCTTAATCCAATTTTCTACATTCTTCTAGACGTCCTACAGAAATTTGCCC
TTGTTGGGAAATACTGGGAAAGCTCTATTGTTTTCTGACGATTTTCTGAT
GATTTTCtgatataagaaatatttctgATAGTGTGTTCTGATAATGTAGA
ACACAAGGAAGAGGAAATTATTTATAGTGGCGATCCTTCAACTATTGAAA
GGCCAACTTTTATAAACCAACaacaaaaatgggaaaaatcCTATTTGGAA
GGCCTTTGCCCATTATTTATTCACACATAAAATGTTTCTGCGTATCTGTA
TCCAGCTTACTAGATGTTATAACCAGAACCAACGCTTTAACCATTTTAGA
CGCTCCGGCACGAGAATCTTGTCAATCTTCTAGAAGTGTTTCGAAGGAAG
AAGAAACTATTTCTTGTGTTTGAATTTGTTGATCGAACCATCTTGGACGA
TTTGGAGAGATTCCCTGATGGTTTACCGGATGGTGAAGTGAAGTCCATCT
CTTTTCAAGTTCTGAGAGGACTAGAGTTTTGTCACAGCCATAATGTGAGA
TTAACCTATTTTCTTTTAAGTGCAAAAGTTGACAAAGAGAATTGCTTTTA
AGTCTTTTAGAATCACCTTTTTGTAAGCTAATATACCACCAAAGCCTATT
TTTATCTTATTTCCGGTGATTTTATAGTTCAGGCTAATTAATATACCTGT
TTTTACCTTTGGTAATCAAACAtgggtttttcatttttaatctttttttc
tcgTCCTAGGTAATTCACCGTGACGTGAAgccggaaaatattttgatttc
aaagaGTGGTGTCGTCAAATTATGCGACTTTGGATTCGCTAGAACATTAG
GTATATTAGGGCAAAGCTATAAAGTGTTGTATTTGATTTATGCACTTtag
tcaaaaataatttgatagtttttttctatttaaacATTTAACCTTAGCCC
CGAAGAGATATCACAGCTATTGCCATTCAGTTGCAAGAGTTTGTGTCTAG
GGGGTCGAGGGCGATTGCAAGTGAAGTCGACACAAAATAAATTCTAttgt
tgatgtacggctctatatcacCTTTGCCCACCTAAACAGACGGCGGTATT
TTTGCGATCTTACCGTCTCTGAGCAAAGTGGAAGACAATTTTGGCTACAT
GTCAACTTTGGtttataccgtctccttcgatttGTCTTGATTACATAAAA
ACCCGCTTATTCTTTACACGAACCGTTATTTGTCCGAACATGTGAAAAGT
ATCGATTTTTCTTCTTAGATATGTTTGTGACATGGCAATGATAACTTTGT
TATGAATAATTTATATTGCTTACTTGTTTTAGCCACAGGGCCTGGGGAGG
TGTTTACAGATTATGTCGCAACTAGATGGTATCGTGCTCCTGAATTGCTC
GTGGGAGATGTCAATTATGGAAAGTGAgagaaaattttgtatttcaacAC
GTGACTGAATATCGTCGTTTTTTTACATGAAATATGAATGACAGCTTTAA
CTAATGAACCTTTtctaaaaaccaatttttttaaaaacacccTTCTTAGT
TCATCTAATGCCACTAACAAAGAAAACCAAAAAGATATACCAATATGTCT
AAGTAAAGTTTATCCGCGGgatctttaggcaagaaaggaCGTGTTTATTT
GTAATGAAAccattttactatttttccAGGGCTGTTGATATTTGGGCGGT
TGGTTGTTTGTTATTTGAAATGATAACTGGTGATCCATTATTCCCTGGAG
ACTCTGATATCGACCAACTTTTTCACATCACCAAGGCTCTTGGTAAGATA
CAAGctgttttcttcaaaatttaacATGACTCATCAGTTCACGCAAAATC
TATCCAGTTTAAGTATTCGTCTTGAAATTTTGCTTTTTACGGACATTTCA
TCGGAAAAAGAATCGAATATTTTAGTAGTGCGATGGATCAACCCATTCTT
GTGTAAACTGAGGGGGCATCTTTCTAAAATTTGTATTTTGGCGCccaaaa
ataaggaaaatgTCTTCAACAcggaaactttttgaaatttttcctaGTTT
TGGCTAAAATCTTATAATAATTCTAGGGTCTAAAAAGCAGAGATTTGCCG
AAAATAGCAATCAGATGCGCTTTTTGGCACCCCTTGTTATTGGCATTAAA
TTAGCTGCTCGCCACCAAGCCACTGGAATATTTCATAACAAATGTCGGTA
TACTAGGAAAACTTAAGATTGTTATCGAGGCCAGTTTTCtaaatgaaaga
atttttatCTACAGGAAACCTGTGTCAGAGACATAAAGATGTATTTCACA
GGAACCCCTTATTCACTGGAATGAAATTACCAAATATACGTTTGGAAAAA
GTTGGCAAGAAATTCGGAAATTTGTCAACCAATTTGAGTAACTTAATCAC
GGTAAGTGGGTCGTCTTTCAAACGTAAGTTACTTGGAAACTGAGCGATAT
GAGCATCTTACCAATCATTCCGAATGTCGTCCGAATAACACTGTAGCTCA
AAGGGATGAATGCAACTGCGAGTGTTAAACCACCTGCTAAGAAAACAGCC
ACCATGGCAGTTTTCTGCCGTCCTGTCTTATTTTGAAAGTACACGGCCAG
TAGTGAAGCAGGTAATTCAACAAAACTCCCCAAAGCAAAGCTGAGATACA
TAGATCCACCAAGATCACCAACACCTAATGAAATTCCCTAATAAACCATA
CCGTTAGTCATCCAAATCACACCCATTGGTAAAATCTTCCTCCTGGTTTC
GCTCCTTTTGAACAACTCTATTGGATTGGTTTATTATGGGAAGTCGTATC
TTGTTGCAAAGGAGCTATAGTAACATTCTCGTCCATTTCCTTCCCGTTCC
ATTTTGCTATTCTCTCAAACACTTGAAGAGCTTCTTCCATTCTATTCTTC
AATCTTAACCAACGGATCGATTCTGGGAATAATTtccaaaacaacatcaa
aacaaaataaggAGCTGAACATACCACGTTTAAAGTCTTCCATCAGCGAT
CTGGGTACATAGTAAGCAATCAGCGGAAGTATACATAAAGCTGATGTGAA
TCCTGTCCATAGAATGATGCCAGCAAGGGGTCGTCGTCTGTGATGGTCAT
CAGCGAGCTTAAGCAAAGAGGACGGAGCGTTCTAGGACGGGTAAATTTGA
TGTTGACGTCGACGTCGACGCATTTAGAGCAAAATTCATTAAGCAAATTA
ATCTGTAACGCGCgccaaaaatcataacaaatatGGCGTCTTTTCGCGAA
ACAAGAGAGTTGTTGCTCTTAGCTTACAGTCAGAATCTTATTTCTGACGA
AGAATTCCTGATTCTATTTGACCTTTATACAAGCAAAAATCCTGACTTTC
CATTTTGGATTTACAACCCTTTCGATTTGTTGGTTGTGTCTGAAGCAGAA
TGCTGGGCTGAATTCAGAATGTACAGAAATGATGTTATCTTATTGAGAAA
TGTATTGAACATTCCAGACACTGTTAGATGTAAAAACAGAACAATTTGTC
CAGGATTAGAAGCATTTTGCATGTTCCTGAGAAGATTTGCCTACCCATGC
AGATATGGTGATATGATCCCACGTTTTGGTAGACCTGTACCTGAAATTTG
CATGATAACAAATTACATTGTTGAGCATGTTTACAGCCAGTTTGGTAACA
AACTAACCGACCTTAACCCAATAAATCAACCCTGGCTAAGTCCAGTCAAG
CTTCAAGAGTATGCAGATGCTATCCATGCAAAAGGAGCAGCCCTTGAAAA
TTGCTGGGGCTTTGTGGATGGAACAGTTCGTCCCANNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NACAACGCCGTTCCAGAGCACTCCCGTACTCTTTGCTTAAGCTCGCTATC
ATAATAAGGCCAGGGATGAAGAACCCAACCTACGAATCGAAACAGAATAA
ACACGTAGACATTACCAATAAACGATGCTATACTGCTTGCTAACATGatg
gaaaaataagaaataaaaagtGTCTTTTTGCGACCGTAGTTATCGGACAC
CCATCCCATGACCAATGCTCCCACCATGAAGAAAACCAATTCCAGAGCGA
ATTGAAATCTCCCATGCTCTCCAACAATTTTGAGTAATCATTCAACAGAA
AGTTCTTTCTTGTTCGCAGGTGTTTCTTCAATGCttatttccgccatttt
gtATTTTGAACCTCAATTTATAGTCTGACAAAAAGTTCATTTTATGCGAA
CTGCAGAACTTGCAGAGAATAAATCATTCTATATATAATGGTGCCATTTG
CAAAAGTACTCGACGAGTCTTGCTATTTTTTGCTCACCAGATGCCAGATC
TCCTCGTTTCAGAATGTGGTACTTACGTTGTGGGAAATTACTAACATGTG
CAACGTTGATCAGTCGACTCAAAAGAATAAAAACAGTTTATTTTTGTCTG
TCCTGACAGTTGGATAGACTACCTGAATTATGCAGCTAAAATTTTAAGTG
ACATGAACTTTATTTAATTGATCGATTTTCATGACTTTTAGTCTTTCTTT
CATAAGATCTTCTTTCAGGTTTCTCCCCTTCCTTAATTTGCCTCAAATTA
AGATCAAATGAATTAAAAATTCCTCATAAAATTTATCACTTAACCCCTTG
ACTACATAATATCTTCAAATTCAAGATATTAATTCTTTGCTCGTTCATCC
AAACGCGTTGAAAAAAAATATTTTACAGTATTTCCCTGTTAAATCTTCCT
GCTATTTGTATTTCAGGAATCGTTGTGTTTGGAAGTTCAAAAGAGGTTAT
CTTGCACCGAAATGATGAAGCACGCTTATTACCAAGAAAACGATTTCGCT
ACCAAATTCCTGGTGATTTTAAAAGAGAGAATTCAACGAGAGAGCTCTTC
AAATCCATTTCTCAAATCCTTGGCTGCACAGAAACAAAGGCGACATTCGA
ACGCTCAATCGCAGCGAGATAAACATTCACCTGGCACTAATAATACGAAC
AATAAAAACGTCAAACTCAAAGCCatacaaaatcatcaaaatgatAAGAA
TCTGAAAAGTGAAAACACCACAAAAGATAAGACTACGCCTTCTCAGCATT
GTCCTGTCTTAGTGACTACAAGCTTGAAAACCGCTTCGAAAAAGACGCCT
AGTCCGCGTAAAGCGAACGACATCGAAAATAACAATGAATTAAATCTAAA
ACACTCGAAGAACATTTCGAACGGTTTGAAACGGAATTCAGAATCGGATA
AAGTTTTAAAGGATATGAGTAGATCTCAACTACGGAAGTCTGAAGGGAGT
TCACCGGAAGTGAAAGGAGCCAGTCGAACCATTCTTGATGTCTCCATTAA
CCAACCTGGGAAAAACCTCCCGGAAATTTGCAGTTCTGTCAATATTAATC
GGTAggccatgttttttttttcattaaacttTCTAAATAAAATGTTTCTA
ATCATTTAACTTTTCTCGAATTCTGATAGTTTTGCTAAGTGAAAAGCTAT
TTTACTGCATTGTGACATCGTAGCAGCAAGGAAAATTAAAGTGGTTCAAT
TGTCGGATGTACTATTCGATTANGCTTACGTTGTGGGAAATTACTAACAT
GTGCAACATTGATCAGTCGAttcaaaagaataaaaacagTTTATTTTTGT
CTGTCCTGACAGTCGGATAGACTACCTGAATTATGcatctaaaattttaa
gtgacaTGAACTTTATTTAATTGATCGATTTTCGTGACTTTTTGTCTTTC
TTTCATAAGATCTTCTTTCAGGTTTCTCCCCTTCCTGCCCTTCCTTAATT
TGCCTCAAATTAAGatcaaatgaattaaaaaaacctCATAATATTTATCA
CTTAACCCCTTGACTACATAGTATCTTCAAATTCAAGATAATAATTCTTT
GCTCGTTCATCCAAACGCgttgaaaaataatattttacgGTATTTCCCTC
TTAAATCTTCTTACTATTTGTATTTCAGGAATCGTTGTGTTTGGAAGTTC
AAAAGAGGTTATCTTGCACCGAAATGATGAAGCACGCTTATTACCAAGAA
AACGATTTCGCTACCAAATTCCTGGTGATTTTAAAAGAGAGAATTCAACG
AGAGAGCTCTTCAAATCCATTTCTCAAATCCTTGGCTGCACAGAAACAAA
GGCGACATTCGAACGCTCAATCGCAGCGAGATAAACATTCACCTGGCACT
AATAATACGAACAATAAAAACGTCAAACTCAAAGCCatacaaaatcatca
aaatgatAAGAATCTGAAAAGTGAAAACACCACAAAAGATAAGACTACGC
CTTCTCAGCATTGTCCTGTCTTAGTGACTACAAGCTTGAAAACCGCTTCG
AAAAAGACGCCTAGTCCACGTAAAGCGAACGACATCGAAAAGAACAATGA
ATTAAATCTAAAACATTCGAAGAATATTTCGAACGGTTTGAAACGGAATT
CAGAATCGGATAAAGTTTTAAAGGATATGAGTAGATCTCAACTACGGAAG
TCTGAAGGAAGTTCACCGGAAGTGAAAGGAGCCAGTCGAACCATTCTTGA
TGTCTCCATTAACCAACCTGGGAAAAACCTCCCGGAAATTTGCAGCTCTG
TCAATATTAATCGGTAGgccatgtttttttcattgaactTTCTAAATAAA
ATGTTTCTAATCATTTAACTCGAATTCTGATAGGTTTGCTAAGTGAAAAG
CTATTTTACTGCATTGTGACATCGTAGCAGCAAGGAAAATTAAAGTGGTT
CAATTGTCGGATGTACTATTCGattattgaattaaaaaatctgATGTAAT
TTGGTGTAATGTAAACAGTCAAATGTATTTAAATTAAGAAATCTACTCAA
AGTCAAACGATGCTGTAGAGATTTGAAATTTATGTAATATAATTTCCAGG
GCACGTGgccatgacgtcatcaaacttAAGAAAGGTGGCGGAGGAACCAG
TCATGGTGGTGGTTCAAAGAAGAGCTCACTCAGTAGCAAACATATTGAAC
ACGAGCCCACTGTACCTTTATATCCGGTTGCAGAAAAAGCCACCTTATTC
ACAGACAAGTCGAGTGAAGAAATCTTGAACAAGTGCAGTAAGAAGAAAGG
AGGAGAGATTGGGTTGCCCAAAGTTTCCGGATTAGTTTTACCCATCGTCA
AACAACAAGAATGTGAGTGGTGATATCTTCTTTTTCCAAAACTTGGGGGT
GGCGGTAATCTTGCAAAATCTATCCGGTATTTCGGATTCCTAAAGTTGAT
TCGGTGTCTGTTATAGACCTATTTGTACGTCGAAATCACGCTAATGAGGA
GATTTCATTataatttttggcaaaatggctaaacaaaaaaagataaatcg
gaaaaaattggtaatgcaaacttttttatccTTAATTTCTAAAATCATGA
CGAAATTCTTTTACTGTATACTTTTTACTTGATTTTCATTCTTAGGTAAA
ACGAACAAAACAAGTCCGACCAGAGGAAGTCGTAAATTGACGGTCGCTCC
AACCATACCACACATTCAAAACATCGATCCCTTTAGTATGCATTTTTCGC
CCAGTAAAGAGGTTTGTTAAAGAATACACTGAAACTCCAACTTAAAAATT
TATAACATTCAAACCTTCATGGAGCTATTTTATGACACAGGGCTAGTGAT
TAGACAGGGCTTACTTAGTGATCACACAGGGCTTGATTTACAGTTTAACA
TAATGTTAACATAATGATTAGTTTAAAGGGAATTTTAGATCAACACGATT
GTGATTAGATCAGTGAAAGATTACAAACCCCTTCCTTCTAATGTTAATCG
TTTTTTATAAACTTTTCGATCTTTTTATCATCCACATTCTTAAATTGTTC
CTAGGTCTCGTTTTCTGGAAGAATATGTTAACATAAACCTTTTTACACTA
CAGTGTTACAAAATTGTGATACAAAGATTTGGAGtttcaatcaaagaaaa
tcatgAAACTCGTGGCGTTGCTAGAAAAGAATGTTTTGAAACAAAGTGAA
TGACGCAAATTCATAATTAACCTCAACAACATGACGTTTTTTCCTTCTTA
AACCTAGGACATGATTCAGAGTCTTAAAAAAGTACGAACTACTAATTGTT
CGTCCTTAGTTTTCATACCCAAATTTATTTCTCCCTTCTTTTTTTTAGCC
AACAACTACAAGGAAATCGAGTCGTGACAATAACTTGCCAGCTGTTTGAT
GGTCCGTATACTTGATAGTTACTTATTCTAATACCAATCTAGAAAtgttc
ctttgaaattcaaatagCCCAAATATTTCACATCACAAATGAACCCTTTA
CTTGGTAACCTTCCAAAGGAACAATGGAATGTCTGACTTTTTGGGTTTAA
ATGTTATGTGAGAGCTAAGGTAAATCTGATTATATGATTAAGCAGAGTTT
AAAAGCTTAAACTGGCCTAAAGGAACTGTTCAAATTTGTTCGATTTAGAA
GATCATACTTGATTGGGTGTTCAACAATTTTACTATAAATGCTTATAGTT
TACATATTGagaattattttgtatttttttgtcccTACAAATATGTATTC
CAATTGTACATAAAAATGATAAGTAATTTTTAAATTAATCTAAATTTTGT
CAATGGCGTTTTCTCTTAGAGTTATAGCCTTCAAGAACTAAATGCTCAGT
TCTATAAAGGTATGATATAATTACTCATCTAGAAGTTCTATAGaacaatt
tcaaattaatttgtGGTTAATTAAAGGGCACCACTTCGTCAATTATATGC
TAATACCTTTCTATTGactggtagttacttgttatatCATAATCATTTGT
TGTCAAGTCCAACTTCTCTTTAACTACCTTCGAAACTTCAAGCTATATTA
GCTTTGCACTATAAATAGGACGTATATTttgactaaattgaaaattgaaa
agccGCATTTAGAGTTGTTAATGTTGAAACCATGTTCCCTGGTTTACCGC
AGCATAATATCTTATTACATAAGCCTTGTATAAGAATTTCtcttagaaaa
atttaaagtatggaactatatatttttttatttcacagtATTGCTTCTCT
AGCTGGACTAAACATATAGTTGGTGCTTTTGCAAGATCAATGTTGCTGAG
TGTTTATAAAATGTCATACTGTATTTGTTTATCGAAATGAGAGATAAATT
AGCTGAATGATGATAAATTCTCAATTGGATAGGTCTGAAATTTTAAGTCT
TCTTGTAAACTAAATCTTGTGAAAAGGCTATCTTTTTATACCCCACAATC
TGTTAGTCAGCTCCATTATATACTATTTGGTTTTGCACCAAGACTTTCTT
GAGAACTGTTTATCATTCCTCTAATTTTGTATATAGTGTATAAAGATTGT
TCATTGTTATTTCCCATGATGCTAGCTTGTTCATAATATTATTCTGCTTA
AActattttacattattttttctgcattttaacatttttataaaGGTTCG
AGTGGTATTTTAATTTGCATTCTAGTTATTAtaatttttgtgtaaaaaag
cctttatttttttcagaaccaTTTTGGTGTTTAGATTGTCTTTCGAAATT
TATTCCCAGGACGTCATTCATTTGGAGTTAGACTAAAATTAACCCACACA
TGATATGG

Gene-mRNA-Prot

The following transcript feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
TCONS_00023544	TCONS_00023544	Clytia hemisphaerica	transcript
TCONS_00023545	TCONS_00023545	Clytia hemisphaerica	transcript
TCONS_00023546	TCONS_00023546	Clytia hemisphaerica	transcript
TCONS_00023547	TCONS_00023547	Clytia hemisphaerica	transcript
TCONS_00023548	TCONS_00023548	Clytia hemisphaerica	transcript
TCONS_00023549	TCONS_00023549	Clytia hemisphaerica	transcript
TCONS_00023550	TCONS_00023550	Clytia hemisphaerica	transcript

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
TCONS_00023550-protein	TCONS_00023550-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000456	supercontig	sc0000456:90298..102755 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.07	2.45	1.25	1.33	39.07	29.1	25.71	27.17	26.87	26.35	17.68	18.89	6.89	6.49	4.33	4.24	8.42	7.92	12.23	6.91	11.6	10.49	5.13	5.07	44.94	36.67	6.9	4.91	2.74	2.98

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XLOC_013238 (gene) - C. hemisphaerica