XLOC_012839 (gene) - C. hemisphaerica

Overview
NameXLOC_012839
Unique NameXLOC_012839
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000435:27639..33233+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_012839 ID=XLOC_012839|Name=XLOC_012839|organism=Clytia hemisphaerica|type=gene|length=5595bp|location=Sequence derived from alignment at sc0000435:27639..33233+ (Clytia hemisphaerica)
CGAAGACATATATGAAGAGAATTCCATTAACAAAAGAACCAGAATTGATA
TTCGAGAGAATGATTGTTGTTGTTATCGGCGGTGCACCTATGCCTGTACT
TGTTCAAGTGAAGGTAAACCCATCTTTTTGTACTGAAGAATCCGACCAGA
TTTCAAAGTCTAAGAAATAAACCCTCAAAGTActtcttttttcatatttt
tcccTATCATAGACGCCCTAACTTTTGAGCATCACCGGGGGATAtaattt
gtacaaaaaatttgCCTCAATACAGTAGTTTATGAAAGGTTGTCAAGTCG
ACATGTCTTCCATTTAAAAGcctcatttttcactttctgaAATATCGTTT
TGCAGGTGCAGCCAGTTGCTCGCGTCAAATTGACAGCTTCTGCGACTGGT
TCATTTGATGCTTCCATAACATTAAAAAAAGATGCCCGGATCGCTTTGGA
CCACGCCCGAATAGAATATGACCCTGCAAAAGGGTTGCCGAGGCTTTCAG
CAAGAGCGTCACAAAATCTGAATaatttagagttgaaaaaatcAGCCGTA
TTACAAGGAAGCGCAAGCCTTTCAGGTAAAATATTATCATAACCCAACTT
AAGATGTTCATTTTGCGTGAGattaaaatttcgaagcaaaTTCCGAATTC
TTACACCGACATTCAGATTTTCCGAAATAGGAAATCAGGAAGATTTTCTC
CGCAAATCTGAAAATTGAGATTTTCTGAAATCGAAAATTtgtgaaataat
ttttccaaaaatcagaaaaatggggaaaattttcttaaaaattgaaaata
cgtgaaaaatgaaattgttaaaaaaattcattgtggtagagggcattttg
taaaatccctcgcttgttttgttagaagcacttgtaaTACATTTTAGGAA
ACTTCAACCTTAAAgaaatcgaaattacgatgtttccaattttttttcgg
acactttggtgtgattttcggacaaatatgacggtctcaggcaaaagtaa
tttcgatttctctaaggttgaagtttccaaaaatgtataacaagtgcttc
taacaaaacaatcaagcgatttcaaaaaatcgaacaaaattccccctact
agtGGGACAAAGTGGAAATGCATGAATTGGCACCTCTGTGTTATGcagtt
aaagaaaatattctcCTGGTGTAGTTTTCTCAATCACCAGTAGGTAAAGA
AATATCTCCTTTCTTATAAATGCGGTTTTGAACTCTTTGATTTTCATCTC
AAACAaatcttttttagtttttttttaatcagaaTGAGGTCCCgagggga
gggggtacttaggcaaaataggtgccgggtatgtgcgagccataagggtc
atTTTTTCActccctcgaaagtctctcaactttttagaaaagtctctcta
agggtcaaaAACGCCAATTCTTTCTCTCTCTAAggatcgattttcgattt
ttggctcggacatacccctcacctcgcaaacctaataccacccccccccc
cccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCCCCCCCCCCACGGAATGAGGTTTACATATGTTTTTCCGAA
TATTTCAAGAAGGTCAAGCCAATTTTGgaattgtttcttttttaggATCA
CTTAGTTATGGTATGGAAGTAGTTGTTTCATTTAACGGTGTTCCACTGAA
AATGTTTCCGAACGTCCACTACATTTTGAAAGGAACAATCAGCGGAACTA
CTAACAATGGAGGATGCGTCAAAGGTATGGAAACAAAGAATCAACAAAGT
ATTTTCAAGCTTCGGAAAAGAGTTTTTTTAGTTAACCTTCCAGTAAAAAT
TCTCTAAATCTTAAAGGTTGTAAACCTAAAATTCCCTCAAATGTCTATTT
GAataatcttgattttttaacATTCCCTATATACTGCAGGAAGTTTATCT
TTATCTACTAATCTGAAGATGTTGGTTATACCAGATATCAAAAGACTAAC
CAGTGTCTCTGCAAACTTCAAGACAGGATGCGGCTTGTTGGTCTCTAAAG
TCTGCTTGAATCCAGCTATTAGGATGCTCGGATGTTTCCACAGCTCATTC
AACCCTTGCAAAACGGTACGTCTTAAATTTTAATTGGTAAAATACACAAA
GTTTAtctaaattcaaaacatttaacACATTTTATTTAAACGATATTTCG
ATCTTTATAGATCGTTATCAACTTTTGAAACAAAGTATTTTCGAAGTATA
CATAGAAGACTCgacaaaaatacgaaaattgtAGCAGGCTAGTGAGCTTT
AACCAATTAACTTCGAATAAACGATCCTCCttgaaggaaatttttcaaag
aatgccccctcaaataaacgccttCTTCGAATAAATGACTAAGGAAGAAT
ATTGTGAAGGAAAACTTACATATATCTTGATAAACATATTCTTTCAGTAT
TTGAACTaatattttgaccctttttacaTCTCTAAAGTGACATTTTTGCA
CTCAAAGCAAACGGAAAAGGGAAAATAAGGTTTCCATTTACTTAATTGAA
GTAAcacagctggcacacaacgttttttcaacgttaatttaacgttaaat
ggacgttgttgaaacaacgctgtgtgccagctgggagcgTTGACTATAAG
GATTATTTAATAATAAACGCTCCTTTTATTAAACACCCCTTCACGctccc
tcgaataaacgccccttctgaaaaccaaaaaaaattacaaccACCCTCGA
TGCAATACAGTAAAGGGAGTTAGTGGTCTAATTTGATGGGTTATTTacga
aaacatcaaaaaaataaaGCTTCTGTTTTATTTACTAGATGCGTGACGGA
TGCAACGAGTTCGGTAACGTTTTGAAAGCGATTCCAAATCCACTCCAAAA
AATGCCAACACTTGGTGACTTCTCTTTATTGAGAGGACCTTTGAAACTCT
GGAGTTTCGGAAAATGCTTTGGTAAAAGTAAAAGTATCCCAGGTATGGTG
CTAATTGACTTCTACGAGAAAgagtttattttatttaaatcatcTAATTA
AGATAGTGGTAGGGGTAAAAGTCCCGTCTTGCAATCAGAAAGACTTATAG
GTTTTTTCATATATGTCAGTCATACTTTTAAAACTGgtagaaatgataaa
aaaagtgctCACATACTTTTGAGGCAGACTGTCTAATATAATTTACTCGC
GATTCTCAAGCAACGTATTTATTCCCAATTTCAGGGAATTGCGTCAAAGA
ACCTGGTTTTTGCGTTCAACCGAACGGTCGCGATCAAAACAGTGGTGTGA
TCAAAAAGAATTCATTTGATGGAAACACACAGCAGCGACAACAAGAATGT
TTAAAGAAATGTCTCGCCCATCCAGGTGCCACTGGTTGTGAAGTGATTTG
GCATCAAAGTAATCGAGGCTGTTACATCCACACACAATCTGTAGCAAGAG
GAAATAATGCAGCAAGACATAGTTGCTGGGTTTTCTCAAAATGCAAGCAA
GGTTAGAAGTTAGATAACTCTCCTCATGTCAGCAAAGGAAACACACGTTT
TTCTATAGAACATCCAATATCTTTGAAGtctttagatgttcttaactttt
tgagtttgaagcctaaaatgttcttcagatgttcttattctcaacttttt
tggtcattttcctaagaaatctggTATTTTAGAGCTCGcaaagctttcaa
aattttcttaccgtgttcttaatatttggcgatcgaagccttatgttctt
atatagtttgtcctTACAAAACAAAAACGTGTAAAGTTTGACTGCGTTTA
TTGACCTTTTTTGATAAGCCTAATCTACGTTACTTCATTTTCAGCGCCGC
TTTATCGATTTTGGAACCGCCGCCTTGGAGATCATTTTTACACAACGAAC
TACAATGAGATATGGAATGGGAAACGTGGTTCAGGATTTGAAGGAATACA
ATGTCGCGTCTTAAAACATCGCCAAGATGGCACCATTCCACTGTATCGGT
ATTGGCGAAGATATTGGAGTGATCATTTTTATACGACAAATATCCGCGAA
ATCGGTAAGGATGTTTTAAACGGAAGCAAAGCTTTTCGCAAGCTCTACAA
TTCCTATCTAATACAATTTACCGAGAAATGCCGTAATGCTAAATCGATCG
TGTCTTtcaacaattcatgatatgcaccattgcaatgtcttccgttccac
ccaatagctgattggttgaaagtgacgtattgactgcttttacgtcactt
ccaaccaatgagctattggttctgtgacgtaatgtcagaagacattgcag
tggtgcatatcgtGAATAGCGCTAAgaacacttttttgatcacttGCTAC
TGTTCTTATTCTATTCATTGTTTTCTTTCATGGACACAATTCTTGGGCTG
TCTAAACGCTGTAGACTTTGGACTGGTTTCTCCACCAAAAATgcgattaa
aatattttttttcagtcaggAATCTCACACGTTTTGGCGAGttttaattt
tgcgaaaatggcaaaaattcgtgaaatcgcgaaatttaatctcacgAAAG
TTAATCCGGTTAAAGCATTTGTTACTACTGTCATCTGACACGAGATTTTA
TAAAACGTGGAATAAATTGTGTCAGTATATGCCATTTTTATTTAGCCTGC
AATATGATTGAAGCTTACTACCTAAATATTGTACTCTTCTATTGACATAG
GGACGGCAAGACGGGGACAAAGAGGAAGATACGGGTATGTGAGTGAGGGA
ATAACAGGTTACTGTTATCCTTCGTCTCGCCAAGGTTTGATTCCTTTGTA
TCGTTATTGGAAAGCTTCCATCGTTGATCATTTTTACACCACCAACATTC
GTGAGATTGGTACATCAGTTCGTGGAAAATATGGTCACCATGGTTACAAA
AGTGAAGGAATTGTATGTTACGTTTTCCCGGCATAATAAATGTTTACGAA
GGATTTGCCTCACATGAAGATTTGAAGAGatgtttatttataattttacc
AATAAAATTAATTGCACCTACATATTCTCCTATgtatagtccgggagcca
aatcctatatctccttaaataagcactttgcttaacccaagattctacag
gataaactatatatttttggaatcctcaactatcctagtttaagaaatgg
tcggtccccacaTCTTTCCATGTATGATTCAAGTTGCTATATCCCATGAA
TAAATGGCATTTTCACCCCCTGAAGCGTCAAGAATACAAAGAATGAAact
aaatacagttgacaagaaatttttctggtgtatcgcatcaaattttatca
taacacaaagtttgtgcctcattaaaagttgttttgggAGGTAGC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00022844TCONS_00022844Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00022844-proteinTCONS_00022844-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000435supercontigsc0000435:27639..33233 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.11	0.04	0.02	0.07	0.09	0.09	0.11	0.28	0.06	0.05	0.08	0.09	2.3	4.65	0.24	0.15	0.08	0.13	0.38	0.1	0.14	0.12	0.12	0.2	0.67	0.93	0.09	0.1	0.25	0.11