XLOC_012787 (gene) - C. hemisphaerica

Overview
NameXLOC_012787
Unique NameXLOC_012787
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000432:168385..174456+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_012787 ID=XLOC_012787|Name=XLOC_012787|organism=Clytia hemisphaerica|type=gene|length=6072bp|location=Sequence derived from alignment at sc0000432:168385..174456+ (Clytia hemisphaerica)
CTGGGAACTGAGTTGGTAAAGCAAGAAACTTTTGTGCAAAGCATTCTGGT
CCTGTTTTGGTGTcaatgaaacgaaaaaaaaaacagagcggataaaaatt
tttcgatttctaaaatggtagacCTTAGCTACGCACATGCTCAAATGAGT
AAGACGTCGTTTTAGGCCACCTTCTAAAGAATATTGTTGGGTTGTTACAA
AGTGAATATCGAATTCAATTCAATATGGGAAGGAATGATACTTGTATTAT
ACCTGGGTGTTTGAACACAAGAAGGAAGCCTGAAAGGTATTTGTCTTTAT
ACTACTTTTAAAAAGTCTTTTATAAATGCCAACTTAAAATTAGTAAtatc
gaaaagtgtaaaaaagatAGACGTTCATGCATATATTTACtataataaat
caaaatttcagaaaaaattgcATAACAAGTATCAAAGTTAATTTGAATGG
AAGCTCTAAATTCTAACAAATAGTTTATCTTTTTCGgaaccaaaagaaaa
aaatcaggactattttggcaaaaacacgacaccctgcctatgccccggac
agtccggggcaaatgtctggggtctgaaaaaaataactttttccccggac
ctacgtccggggctccaatttttgcgccataNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCCGGACGTATATCGCCGAGCACACTTTAAACCCC
CGGACATTTTATCCAGGTCTAAAACTCACCCCCTCACGCCCAAATTCCGA
GATTATGtatgtgtttttcagcgacggagacggtaaggttctaattatAA
AAGAACTAACTTTACTTACCTTTCTCTGTCTGATCAGgatccatttttca
gctttcggttagattttagaatttgattgCTGAACAAACCACGCTTGAGA
TTTAAGGTTCAAATACAGGCCTCACACACGAAACGCCAAAATCAGcacat
tacaagatcttttggaagacggcgtttgtccatggaagaatatttcaatg
aattagaaaaaagcccgcgcggtcatcgattctataaaaagcgaccgcgc
gggctgtctggggcgtccggggtagtctctcaaaaacaaataatacggac
cccgggcacgcatcaaaaaaaccccggactgtccggggcataggcagggt
cgtgcaaaaactgattttggcgagcattaaaaatctttgaatttttttat
atcggagggaacttattttggcaaatgaCGGCTAAATCTTTCCTATTTTG
CCTTATTATAAGCTAGATGATTTGTGTGTTTTGTGATGGCCTGTAGACGT
TGTTTGGTCTCTTTCCATCCTTGATTGGTTCATGTTTGTTTGGTTGATTT
AGTCGTCTTGCTTCAGCTTACCGAACATACATCTGTgtgtttttcctaaa
aaatatcaatttactGAAACGAAGAAAGGGATGACAATGGTTAGACAGTG
AAGGAACAAGATAGAAGAATCTTGCCTTAATTTAAGCAATTCTGATGAAT
TTTTATggttattttgtcaaaattgaaaagaacTACCGTAGGATCATCTA
ATCTCGACATGCGTCTTGCagtctcgacaccggatctgtaaaataatcaa
aacaaaccttgaatgaaattcttggtatcattcttatcgaacaagttcat
ccatcaaactagaagttcagtaaNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNcgcgcttagtcgacctggtttccatttccttattatttattgcaa
gcacacgctctaggcgctaggaggccgcgttaaacttctaggcgccgcac
ctagagcacccggtcccttttcaaattcataaggaaaccgggttctttta
attattttcggttcacggtaaaaaggtctacttaaaaattcctcgcgtgc
aaaatgttgttgtgatttgggcatcttcgatggttgaaagcatgctaatt
agttttttagtgattactacatcgttaaagtgttcttttcaaatataagt
aataacagttcacatttctcatattatattaacaatggATAGAGATAGag
aacaatttagtgattgattgataactttgtatgtatttgtttatgtttga
ttttttatttcgaagaccagcctacaactatgtcgagattgcaagacgta
tgtcgatattaaacggCTCTATGGTAGCCGTCACCCGCCATTGCACCAGC
CGCCaaggagtagataagctgacCCATCACAAGCCCTTTGGAAGGTGGGA
CGGGTGTTAAGATTATTTTTATGCCTGAAGAACGAAAGATTACCTACTAA
TAGACGGCTTTCGTGATACATCATTTGTTTACTCACGTGACTTACCACCC
AATTTATTTGAGGCAAAAAGACCGTAACATTAGCAGAATTTTTACCATTC
AATTTCAAAGTGATATGACTGTTAGCtatgtattttccaaaaatcaaaat
gttaaaaacataactaaaagtttcatgcacttacgtacaatcatcagatg
tGACTAAAAACAgtgttgaaaagaaatttatgtacaagaaaaaaattctg
attCATTAAAAAGTGATTAAAACATGTGATGGGTAATTATTAAAAGACcg
ttaaaagataaaaaagacaAAGGTAGTAAAACTGTAAAATTCTCAAGGGT
CTGGTGGGACATCTTTGAAGCTTTTTAATAAATACTTTGCCGCATGACGA
CACGTAGAAATTAATTCAGATCGTTTATTTAATAGTTTTTCCTTTGACGA
AATAATGTGGTACTTTTCCGTAAGGCATAGGGCACATGATTTGCTTCCAT
TTTTGTACGGTTGGGCGTGGTCGATAACTTTCCACTGTTAGCTATCAAAA
ATTGGATTGATACTCACTTGCCTCCATATTGTATAAGTCTTTTTGCCTCC
AATAATCAAGCGCAATCTCCCACCCACATCAGTCTGTCTGTACAAAATCT
AAATATTGAAACCTGTCTATATTATTTGAAACTAAAAAGGTTGCAAAATT
AGTGTTTCGTGACATCATCATACTGATCCTTAATGACGTCATTGCAGGGG
TAActaacttttcacttcactgaaactATTTAACTTCATTTATCCAATAG
ATTCCCGTGATGATTTCTAATCCAATGAGGNtttcacttcactgaaactA
TTTAACTTCATTTATCCAATAGATTCCAGTGATGATTTCtaatccaatga
ggggtcagcCATTGTTAAAGCCTTCTCAAACTCAAGATATCGCTTTCTTC
AGGTTTTGATGAAGTCATTGGACCCGAAATGACCCAAATTACACATACTC
ATTTTTCTAGCTCCAAAATGTACCTTCTCTAAACCCTCGCTTATATCACA
TATCTTTTATCACATTTTTCCGTTTTGATGATGTCTTCAACCAAAAACGc
ccaaatttcaaagtcacaTTAACgggtcaacgggtagcttatgccccaag
ggcgTCAATCAGTACATAAATAAAGCCTAGGATATATACACAGGGACAAG
GTTGAGTGAgcagaatttttaatttttgtgagaACTAGTTTTGGCAAATT
TAATCTAAACTTTGCAAATTTGCCATTAATGTAGCTAAaggcaattaaaa
tttttcatgcAAGCaagtaccgtagagtcgttgAATATCGACATGTGTCT
TGTtatttcgacatagctgtaggctggtcttcgaaataaaaaatcaaaca
taaacaaatacgtaccaaagttatcaatcaatcactaaattgtactcgcc
ctatcacgtcacagattgttgaaatgtaagaaacgtgaagtggttttttt
tcaaaaagaaaactttaacgatgtagtcactaaaaactaattagcatgct
ttcattcaACCACGAAGatatccaaatcaaaacaacaatttgcATGCGAT
GATTTTTTTactagacctttttaccgtgaactgaaaataataaaaggaAC
CTGGTTTCCTTTcgaatttaatgtgaccgccatactggctTAGCCCCTAG
AGCatgtgtttttgataaataaggaaggggaaaccaggctaagcgcgcga
attattttactaattaaaaatttgagttAGGGAAAATAACTTGCCTTAAA
GGTTACAATTCTTGAGGTACTAAGAGCTAAGTTTCGGATATACATTCAAG
ATAATAATAGTCAACTATATTTCACATTCAATTTCTTTATAATTTCAGGT
TGATAATAATGAACCACGTTGGAATCCTACGATGGCACAGTCCAAAAACA
ACACGTGATCTCCATGCTTGGGAGAAACAATTGAACCGTGCAATTTCAAT
GAGTACTAAAGTCTGTTCGAACCATTTCACAAGTGGGTATTGTTCTGATG
TGTGTCGCATACCAACATTATACTTGAACGGGTATGAGAAAGATGAATAT
AAGCTTTTGTATGGGGAAGACAATTTCCAAGGAGGTAAATTATGCACGCG
ATATGAAATAGAAGAAAATGATGATAATGAAGACCCTTTTGAAGTTATAA
CACCCTGTTTACATGATCACGATTATTTAGGTTTCTCATCACAAACTGAT
TTCCATTATCTGAATCTTTCTTCAAACCAAATGGAGAAAGTGGAGACGAT
GAGTGACAGGGAAAAAGAGATCATGGAATTCTTGAATAAACAATTGATAG
CACGTtcatttgttacaacttgattTGAGGTATGGCAAATTAAAAATTCT
TCAGATAcacatctttttttataagaacgtccaaaaCCTTTTAACGCCTT
CgtatattcttaactttttgagttttagtgTTCTAAAAATCTTCTTACTT
TCACCAGTTTTTTAGTCCTATTGTgccattttttaagaaattgggAGTTT
TAGAgcctacaaagccttaaaatgttctttaaactTGTTCTCTatgtttt
ggccatcgaagccttcaTGTTCAcccagtttgttcttataaaaaagtgtg
tatttcAAAGACTTGTATTTGAAAGAGAGCAGtgtttcttgatatttttg
ttgCTTCACATCGCTGCAGAATGGATGTGGTTTTCATCCaggagattatt
ttttgtttccatttttGGGTCGTGTTTTCATTTTTCCCTTAGGTTTTTTA
GCTAGAACTGATTGATTCACATTTTAAAACCATCCTTGGAATGGTTTTTA
ATAGTCATATTctcaaataaagtgaaaactaaaatatttgttCATATTTC
TTGGTTTTTTCAAAAGTGCCAATAATAAATTCTTTCCATACAACAAATAA
TGACTGATTATTGATTAATGTCATATTCAAGAATTTAAAAGTcgggatat
ccaggctgtaaacaattttaatttttgacgtTTCTGGTTTACTGCCTGGC
TTTTTAAAGTGATTTTCTGTACAAAGTAAAAAGGCAACGCACTTGTACTT
TGTCAATTCAAAATTGTGCGgaacaaagaaaaattgctGTATGTAGCAGa
aacatcaaaatagaaaaatgattTACATCTTGGTTGCCCAGGCTAGAATT
TTGGGATTATTTTGAGTCCCTTTTACAAACGTAGTCAAACTATATTTTGT
ACATAAtgtaaatatatttcaaaacatACGAGTGGTCAATATTTTATCAC
ATTTTATTTACTAAACAAGCTTGGTCGTCTTGAAAGAATACTGTATTTGA
CAATCAtatcttttctattgtaaagaACAAAGACTTATTTATGTATATAA
ATTTATAAAACACTtgcaaaca
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00022768TCONS_00022768Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00022768-proteinTCONS_00022768-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000432supercontigsc0000432:168385..174456 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.34	4.19	1.13	1.15	8.7	5.71	4.19	4.32	3.38	3.42	3.3	3.36	2.4	1.94	1.32	1.7	3.23	1.98	2.05	2.69	4.73	4.14	5.51	5.13	5.28	5.75	5.59	3.57	6.2	5.34