XLOC_012548 (gene) - C. hemisphaerica

Overview
NameXLOC_012548
Unique NameXLOC_012548
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000414:33334..40499+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_012548 ID=XLOC_012548|Name=XLOC_012548|organism=Clytia hemisphaerica|type=gene|length=7166bp|location=Sequence derived from alignment at sc0000414:33334..40499+ (Clytia hemisphaerica)
GAAGAATGTCGTCCATGTATCTTCCGTACACTTTAGTATCAGCTTCGGTT
CCATCGTACATGCTAAGCCAAAGCAAAGACCCTCCAGGGAAACCCCCTTA
ACTAATATCACATTTTGTATGCTAAGCCGTCCGTTATGGCGAGTTTGAGA
GGATGATGGTTTAACATTGCTAGCCCGCCTATTCCTTGTTATTCAAACTC
CtggttattcgaagtaaattcttTCCCTCCTTTGGAGCTTAATAACCGGG
AGTTTACTGTAACTTCATTAAATCACAACAACTCAACAGCATATCATTAA
AACAACACTGCCATGGTGGTTTTAAATTTGCACAACAGTTGTCTATGTAT
GACATAGGAAATATAGCTCAGGCGAGTTAAGGCAAGTCCAAGACCTATTT
CCCGATATTCccaccgcttcccattattcattacttaagggctctgacca
tagtgaacttttcataattgccgtgtttaaaatgtgttttctgactgatg
taaccaaatagactatggcatgttatacattttctgttagacaaactatt
cctgaatctgaaaattcaaaaattgcattgaaaaagtttgatgaagaaga
aaatgaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcat
caatttttcatctggattttgcttaaaaaaacattcataacttttgacac
atctttttagaaaaattttccgcaaaatttaaaatagttcaattcttagc
ggacagtttgaaaaagttcGAAGCAAAAAGGTTacttacccattaaaact
tagcactttttataaaagaaggtgatgcaacatattatcaacgtcttttt
aaagttcataacgtcattttagcaattgagtttttaattactcttaaggg
atttgattaaaaatcaatttataaaggcaattctttgttaaaagtgttaa
agaatctaaaacataacttttatgttcagatactaaaatcaattttctga
ctatggtcagagcccttaattttcACATATCATACAGCTCAAAAAGCGTA
TTGACGAGATGGTTACGGAAAGGACTGGgtaaaaaaatttagattagGCC
GATTTCAAGGTAttggccaaaaactgattttgaagTTATGAAATTCGTCG
AAATACACGTCATAGTTAAGACCAAGAATATTCTTGGTAAGACTCGTGTA
ACTTATGGCATGTCCAAAAAAGGACATAAGTTTGGCGCAGAAAATTGAGG
GAGTTAGGTATGGTCATAGTGTATTAAGATGCAGATTTCAGAACTGCCTG
TtatcataaaataaattttttgtcttttttgagaaattaagGAAAACGTG
CTGCATGATGCCattcttgatgacgtcataaaacttaaaattaCTATTTA
ATGAgcttttaacgaaaaaaaattgatgtgtTCATGCTACCTAGTAACCC
TAAAAAGCTTTAGAACAGCATCTCTCATTTTTATATGTACTATATGCTCA
TAGAAAAACAAATTCCTTACAGTTTAATGATAAGTTAATGTACGCAAGAA
GTTTTCCCTGGATTTTAGAAGGGGAACACACTCAACCATAGAGTTGTATA
ATAAGTTAAGGGGATGGGTAAATAGTGCGATCTAATCAacatttctaaat
aaaaaattcttagTTTAGTTAGTTAGCTTAGTTCGAGGAAGAAATGGTTT
TAATTGCATtccttgaaaaaattaaaaacatttcatttaCATTCAATTCA
CTCAAGTACTTGATTCACTCTAACTTACATTACAAATACTGTGCCAAAAG
CGGAATGTGTAATTAAAGTTGGCAAAAAACATAATatgattttctaagaa
atcatCATTTGGCAGATTGATAAAAGAGAACCATGAACGTAGGATTAGTC
AAATCATGTTGTTTGCGTTTGTTTGTTGACATTGCAGTGACAAAGATGAT
TGAATGACTTTCACAAANTTTCATcttgattttgcttaaaaaaacagtca
taacttttgacacatctttttagaaaaattttccgcaaaatttaaaatag
ttcaattctttgcggacagttgatgcaacatattattaacgtttttttaa
agttcataacgtcatttctgcaattaaattcttaattactctgaagggat
ttgattaaaaagctatttataaaggtaattctttgttgaaagtgtAAAAG
AActtaaaacataacttttatgttcaaatactaaaaccaattttccgact
atggtcagagcccttaagctttaagaatagttttactatAGCATGTCCTA
GTATAGACTTGTAAACAAGTCTGTTATTTACCACGCGCAACAAAATTTAG
GAGTCGGGTACTGGCTAGGTATAATCGGTAAAACGTTCACACGGGAATTA
GCGCGCGAGAGAGAAGGAAAATAACNCAATCAGAAAGAGTATTGAGCTAC
ATTAGTTGAACTTAGCTTTTGAACAAGGAATCATTTTTTTGACGACAGGA
GCTGTACATATTTCTACATATGTTTttaatatatttcaaaattttggtaa
tgCGTAATGTCCGTTTCATGGCTTTTTTTTACAACCCTTCTTTCAAGCAC
TTAATTTCTTTGTTGTTTTCGATTAAAAATTATCGTTAACATAATCCAGA
TGGTAGttgacttaagggctctgaccatagtgaatttttcataattgccg
tgtttgaaatgtattttctggactgatgtaaccaacaaaactatggcatg
ttatacattttctgttagacaaactattcctgaatctgaaaattcaaaaa
ttgcaatgaaaagatctgatgaagaagaaaatgaagacNttgaaattttg
aaatttgagaatatcgtTCTAGATACAGTTTCCCGATTTTACCACTCTAG
TAAGATTTTCCGGTGTGTGATGTTTTTCATTCAACGACTATACTAGTCTA
GTCCTAGTATTATGGTATATCTTGTATCTTGTACTAGAATATCAACTTGT
TATTACTAAGATGTCAGGAGAACAGCCACAAGATGCGATGGATGCAGAAA
TAGATGTCATTATCTATCCTGCTGTAGCATGTTTTGGAATAATTATCCTG
ATTATCATGTGTCGTTGCTGCTTTTCCCGTTTATGCTGGGAACCATGTAC
GAAATGGTGTTGTATCAAACCAATGTTACGTTCGCCAAATCCCTTGAAAA
TATCATCTACAAGTAAAGAATCAATgtgtttcaaagattttcaaacatGT
ATGGGTTGTTTATATCTATATAGTCCAATCGACTGTCGACGGATGAGCCA
GATACAAATGTATGAAGCCATTCATCGATATAATGAACCTGGTAATCGAC
CACCGATGTTTCATGATCTCATTGATCACATTGCAAATGATGAACTTATA
TCCTTGATGTTGGAAGAGATCAATGCAGCAAACCCTCAACTATTCCTCAA
GGTAACTACTTGAGTAAAGGTAAAAGCCAGCTGCGGTAAAAGGCTTCAGA
GGGATCTGTCTAGAGCCCGGGGGTTCTAAAGTTCCTATTTTTCATTCCtt
tcaaaaatcatcaatcaTTTCCCTCGAAAATACAGTTTTTATTAGCAGAT
GCCGAGAATTAATTTGAAAACTAACTGTTCACGTTTTACGTCTCAACATC
CAAATAGAATCTCTCTTTTCATTTGAGGTTTTGCCAACTGGAAGTTTGAG
AGAACAGTCAGGCAAGATTCTACCGTCCACATCTGTTTTGGCGTCTGACC
ACGATCTAATGCTGATTCCAGGTACGTATTACTATGGCAACCCGATCCCT
TTTTTTTTGTCGTCTcgttcaaattttgaacagtccTATACTGAGGGTAT
ACTTAGGATGTCGCTCAGGCCAGTCCAGACTATCCATTTACACAGTATTG
GGTGTACACTGAGATCTGCTTTATCAAAACCCTTACATATAAGAGTCTTA
TCTCTCATCATTCTTCTCATCATAAGGTGATGTAGACGTAGGACAGCCTG
GTTGTGGACAAAGAAATGCTTTTGAATTGGTTCCTTTGAAAGATGAGCCT
GGTTATGTTTGGCTTAGATTGAATCGAAATGACTTGACAGATGTTTGGAC
CAATTTGTGTTTCCAAAAGCAAGACCAAGATGGAACAGGTAAGAATTGTT
TAAAGCAGCGAAAGTCAGTCAATCAGTTCCAGTTCTCACATTCCCAGCAT
CACCATAGTTACACCGCTCTCACAGCCCCGACGTAGAACTTTTTCCTACA
GTGGGGATAAACATTTATATTGAAATACCATTACTAGGGTTGCTTGATAT
ATTGGCTTGAATTAAATCATAGTGTCTTTCTACCTGTCACAACTTGCCGT
TTACAACCAAATTCGTAACACTTTGAACGTGTCGACATCTGTTCAAAAAT
ATATCACTGACATGACGATCACAAAATATCCCAATGAATGCTGCCAGTGT
TGCTGCGAGTGCGTGAAAAATACATGTTGTGGTCAACTACAAATCAACGA
ATTCATCATCGAGAGGAATGGACCCGCCCTAACTCTTATTGTACGCCCAA
AGTATGGAGAAGAGATGACGCATGTCGATTTcacttttggtatttttttg
cCCACAATTTCCAGACGATTTTCAACGTAATTTTCTTCTATTCTTTAAAA
AACCTTTGTCTCCCCATTAAAATACACATAAATATTACCTTCTAACTGCT
TGTTTAATTTAGACATTTTGATCGATGATAGTTGTAGTACTGCTAAAGTC
TACTCATTTTATATTACGTTAAGTTAATAGAACTGGTCAAAtcaaaagat
tctaaaaattaGCGTGAAATTTTATCAACAATCTTTTCATCAATTGTACA
AATACCTTTAAAATCCACAGGGATAAACATATCattcttttagatttttt
caaaaaaaggagacGGAACAGAGAAAGACCGTATTACTGGCCAAGCGAAG
AGATAGTCAACAAAATCAAGCGAACTGGTTGTCATATAGTACCTAAACCT
TCTTACAAAGGTCTGACAGTCATTGAAAAAGGTAAGATGTCCATCAAAAG
TACGCCTGAAAAAAATCAGTTCTACAGTATCAATTACCATCAAATGTTGT
CTTTCTATGCGGTTCTCTGATAAAATGAATCCTCTCATATCTATatcctt
ttcattttcagagCAAGGGCTGTTGGCCAATTATGCTGTCTTAGAATGGC
GTATGTCATTCTCGATGGCCGAAGCAATTCTGTTCGATGTTCTACCAGAA
ATTGCAAAAGAAGCATTTCTAGCTTTCAAAGCGACCATCAAGTTACATGT
TAACAACATAGCAGACGAATACGGGGTGTTCCATAAAGTCCAGTCCTACT
TCTTAAAAACTGTGCTTTTCCTTGTCACCGAATCAACAGAATCTGCTTTT
TGGAATACTGAGATCCATCTTCCTGGATATAATTCAAGAGCAAGCACGGA
GAGAAATAATCATAGGAGAGAAACCTCACCGGAAATGATTCCGATGTCGA
ATTTGACTTCGAGGAGTATAATTCTTGAAATGATTGACGAAGATGAAGAC
ACTTCCTCATCAAGTGAAGACTCGCCCTTGATTGCAGATGACACCGAAAA
TTCAAATCCAAGTAGATCGGGCTACGACAACTTAGGTTTACAAGATCCTG
AAGCCATTCGGAGAAGTGAAGAAGCGATACAGCGAGAGGAGGAAGAGAAG
AAGGAAGCACTCCGTGAAAAACGAAGACAAGAGCGCactatttgttttta
taaaaagctCATGGATAAATTATTAGCCGTTTTTGAGAAAGATAAACATC
TTCCCCATTACTGGAATCCGAAGATCGAACTTTTCACCAGACAAGTGTAC
AATGAAAAAGACTACGATTTCATCTTGAACCGATTGAACACCATTCGGAA
GGACTACCTAAACCATCTTGCAGACGACTGGTTGGAATTTCAACGTATAT
TAACATACACTTGCTGTGAATTTTGTTTACCTGGACACCGCCCTGCTAAA
TATATTCCACTTCAAAAAACTATTCGATGTTATTGCTGTAGTATTAATGT
TGGAAATGAAGGCACTGATCGTAATTGGGACATGGATCCATCTCGGCTTT
ACGTTTATTAAAGAAACTCCACGAACGGTTGAGCAGTAGGTCAAAACTCG
CATTATTTTGATGGTTTTGTTTAGGTTGATATCATTTtccaatctcgtac
ccagagtttgatcgtttgcttactcaacaagctttttcacattgaattga
cactgatgtggagcaagattggttaggAAAAGggaaagaaaacaattttt
tgtttattcagcacaaaatcgaacaatataacaataggagcCACTGGCTT
GATATAAGACATGATATGAAAAGGGAACATTTATGTAAACCTAAACCTTT
AATGAATCATTTTTCATGtaatttaaattgaaattgcATTAGTGAGGTAA
TTAAGTTATTTTTGTAATGTACTTTAGCCTTATCATTATCAAACACCACC
AGCACCGGCAAAAAAACTTCATCACGCAAACCGTTGGCGCATCCTAACGT
TGCTTTGTTCAATTCCGAattatgaaattaaattttttacgaaaatttta
tcacatttttgaaatattttttatattttccgtAATAATAAGTTGCaaga
atttttccaatatttt
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00022366TCONS_00022366Clytia hemisphaericatranscript
TCONS_00022367TCONS_00022367Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00022367-proteinTCONS_00022367-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000414supercontigsc0000414:33334..40499 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.01	0.05	0.04	0.06	0.48	0.23	1.12	1.11	0.96	1.81	0.77	0.9	2.7	2.58	2.76	2.8	1.24	1.43	6.95	5.56	0.2	0.37	0.2	0.25	0.54	0.45	0.9	1.06	0.12	0.14