XLOC_012485 (gene) - C. hemisphaerica

Overview
NameXLOC_012485
Unique NameXLOC_012485
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000410:159323..169088+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_012485 ID=XLOC_012485|Name=XLOC_012485|organism=Clytia hemisphaerica|type=gene|length=9766bp|location=Sequence derived from alignment at sc0000410:159323..169088+ (Clytia hemisphaerica)
TTGCATGATTCGTAAACCCATCAAGGTAACACTTCTTACTTTCAGCTCTT
AAGTACTTGATTTTTTCATCATCTAGTTCGTTCCCCACCTCTCTTACTTA
AGTTAAAGGAGGATTGTGATGATAGCAGCATTTTTTGTGCTAGTCAGAAA
ATCTTCCGTATACTATctttgctttctgatttgaatgatggcgctgcgAT
ACTTTTCCCCCCATCAGAATTATTAAAGGCgaaaagtagttgagctccag
ctcctggactaGCATTCATTGTgctaccgtgagaggtcctaaagccgacg
gCCCAGCCTAAataaagccgatggggtctttcaaagatacaaactaaaat
aaaaacaaaccttttgctgtgacgcaacgaagataccaaagtgtcatcta
aactgagagatttgatacattgaaccaattgaaccaaatacagtcaggca
catcctggcaaatgaacggggtgagcatttgcatggggtattcgtcaccc
agtgtaaatgagacaggacgtctcaggctaaaagcgtgaaaatgaataaa
aatgaacttcaaactgaaaaagggaaaaaaggaagaaaactgggaacttt
attttttcattaaaagtNggacgtctcaggctaaaagcgtgaaaatgaat
aaaaatgaacttcaaactgaaaaagggaaaaaaggaagaaaactgggaac
tttattttttcattcaaagtttcttcaatcttcaaagacaaaattgaccc
atggaaaaaaaatttaatctatgcagttctttgaaatgaagcaaaatatt
tccaacccggttcaattaaaatgggtattcggcgctattacgtcactttc
gttttcgaccccgttcatttgccaatggtcgcaagtgaaaaataccccgt
tcatttgccaggatgttcCTGACTGAAATAACAAtgattgcttcttataa
caaaacatatttttttattgcaatatgcacaacgtcataaatgacaacag
tagtaacagcatcataaaaagtaacgagatgttttgattttccaaagcac
acgaaaatataaaagaggtctgtgtacgagcgtgctcattttgcctggtt
tctattactttacactggcacttggcttgattgcagGGCcaggactttgt
gtaaggatacatatagacgacgtatattactttatattatatattacatg
ataagaatacaaatagacgacgtatattacaattattatgtattacatga
caccttgctcctattctagtaatgataatatatgtcgtcaaagagtacac
ttaaatgaagagctaTCCGATTGCtggccttccgtaaataaacatccgga
cttataggtggtaaagagggcgttgatagttgccgcctcattgattcgat
gtttgttattcaaattagtaCTANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNgaaaggtaattatttttacaactcgcactttttaattacattaat
tgacatcttgacattacagctatcttgttagatgttttgtttcgagagtt
ctagcaatagtttatcgttcaacttggagagggaatgtttgtaaacatag
gattttttttcataacagttatttggggggtcggaattaggctgggctgt
cggctttaggacctctcacggtatcaTAAATAGCAAGAGCAAGGAAGGGG
AGGATAGTTTAAAAATGGGGGTTTATACATatataatgtaaatttttttc
aagcactgttatgaaatttggtcttcatgcAGTCATGAAAGGATGAGTTT
TCtgttaccgtaagttggtctaatatcgacatcccttgtcTAATAAACCT
ATCATCAATAAGCCTCCGCTCTGCCTCATGTCAAACTAAAATAATTTCGT
GTTAACTAAACCAACAATGCTAGTTCCTTTCTTTTCTTAATAAATTACCG
TCAACTactaaaaaatacacgatttctctttcgcaccaagtaggctttta
aatcgaaatacgaaaaaaatccgtagtggaacataCGCTCGCCTGTCTGT
GCAGtctaagaggaacaaagaagtatgattgataaacttggtggagttca
aaacaaatttgttgtcaaagagatttaacagtaagtgaaaatacagacca
gatatcaagtCCCAAGTTacagcagttgacggtaagccACAGAAGAAATA
TCTttagattttttagattttttaattattttatcaacttttatacatat
acaaaataaattagtttttattattatttattatgaaACTAGACCacttt
taatgttttcattttattatttaccTATGTTACATTGGCGAGAATAACTT
TATAATAAGTTTATGCTAATTAaagaatagaaatagaaatagacaGTCTA
AACTTTAACTACTATATCAGGCTTAGAAACTaagctagtcttacctcttt
cgatttcaagccaacatcttagcaatggggtgctcgcccattgaaacaaa
tttatatgaagggtgggattttacagccgcccatCGTGCtaggcactgaa
aggccatgggtgccaaaaagaagggccgtttgaaatgcggcaacctcatt
ctaagcaaagaaaaacagtttcaacctttctataaatttcagctgataaa
aagggtgtctgaattagaggaggggtgtcgacattagaccaagttacggt
agatTAGAGTAAAGTCTGAGTCaacaagaagtttttctttctctctctaa
agatGTTTCACATTATATTTGTTACAGCTATTTTTGTCTGAAATCCTTGG
GGGATACCGTGAAGTACCGGGGGGCCACTGGATTTCGAAAAGACGGTATG
TGcagcgcaaaatctgcttttaaAAATCGTAcgcttacagtgcagttcaa
tatggctgaaaaggtaccctgcattttctcttgatttacccaagccttat
agtgcactatatttctcagctgtacaTCTGCATGAAAAAAGaagcttgaa
attttctgtttcaaagaaaaactgagaaaattattcttgtcagctgtaat
tatcagacaatagaaactttttcaaacaaaggagaagtaaaaacctttct
ttttatcaattattttgaatttgttttaagaTTTGACCCTTGCAGTACAA
AAGTTGCTTAGCACATCACTTactcacttactgttaaatgttattgacaa
caaatttgttttgataactccaccaagtttatcaatcatactttctgtca
taacatgtcacaataactttcactgatagcttgcccttttttaccttttt
gtctttattcaaaatgaccggatgcCACCTAACCCCTATTGCCAGGCTGC
ATCATTAAagcggtttgtgtaaaccgcaggttacaggtcacatgttacag
gttacaggtcagtgatgacaggttgacaatgtcattgcagaggaaaatgt
ttggaaaacacaaagaattatcaaaaacataattctcaagcaatttcatc
catataaaccatttcaaacatcaaaatttaaccatgtgcttttatcgatt
ttttgcagtttttgccgtgtataacgcagaccagaaaatatttgaaacca
tattatacgtataacaggtatattacatattgtaatgtttgtaatgttat
atgattgttacatataataaaacNggtatattacatattgtaatgtttgt
aatgttatatgattgTTACATATAATATtaaaacacatcgctctaaaact
accttctcagaaaactcacgagcttctgattggtgtaattttatattcag
ccatattgttatcatcacattcggtatgctaaatatttttggtttttttc
tcttgtaagacatgatattttgtgattctgtcaatatttttgtcaaaaat
tgtcattaagtcattaaaataacagttgaatgattaattagtttcatcct
tctaaaaccactctcttagggaccttgcaagcttctgtttggtgccattt
tttatccattcacaccatccacattaCATTTTgcatgataaatatttttc
gtgcttttgtcttgttaggcatcacattttatgattttgtcattattttt
gtaagtaagtgtcacttaacctgagatcagattgtgaatgttttctgcac
accacgctgaagctctaaagggatgtgtgaaaacaaacaatctgacgaat
atgcaatctcgaaatcgtaaggaccgcgttcgtctaaaaggactgggaat
gacaacaaagttgcgcgattgtgtttatgaataggacGCCttattagttt
ttattttttcggcgcacaacaagattcttgttgtagaattttccgcggga
ggactaatttcctcagatgtataattttcaagtgcctttagaggtttacc
gtgcgcgtacaggcgcgtaagaaaattatgaacatctgttatcaggttag
tgtcactaggttgttattctattcaattgtcattttataatatctaaata
acatgtattacttttttgtaatttaatgcgttatgtattgatgttatgtt
aNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcctgtaacctgtgacct
gtaacctgcaacctgtaacctgcggtatACACAAACCGTCATTAAAGACG
TGCAATAGCGCACGCACACCTCCGCACACATCTAAAATCCCCAAGGAGTG
CGATCAATTACACCCCATAAATTTAGATTCCACTACTAAAAGTTGTAcat
agcactccttatcacacgtctaaataacaaaaattaaggttttaggagtg
tgattgaccacacACCCAGAGTTTTCAAATGATAAAGCCTGTATTGCCTG
ATATGATGAGATTAACAAATaatgagtgtgtaacttgccgcaggagtgac
gtcaaacgctccatcgttttgccactaatttggtcttcttcgtctcagac
atttgcgtgtgttccactacagatttttttatatttcgatttaaaagcct
actcagtgcgaaagagaaatcgtgtattttttaatacgccgttcattaac
tcaaatcaaatgactttggaggttcggtgaaatggtcgccaaattgccgt
cccatgttttgtcagatagtcccaagttagagcagtcaACGGTAGCTAAG
ATATCTATGCTTGAATCTAGTTCAACTACTTAAAACTATTGAATGACACT
ATTGAATGTCCCCGCCCTTCTACTGCCTTTAGAGAAATTGACTTATTGAT
AACTTATCGCTAAGTTATCTAACATGGAAGAAAAGAAGGTTTCCAGTCAA
CCTAGCCAATTTAGCCAACCACAATTTCTCCTTCTTCTAGTACTAGAAGC
TGTATGTGTAGTGCATTGGCTGGTTGGCTATCTGATTGTCAAGATTGTTG
TTTGGTACCGTAATTTGGTCTAATTGTCGACATCCCTCAgcctcatctaa
ttccgacaccctttttatcagctgaaattgatagaaaggtcaaTAAACTA
TTATTAACtatttctttgcttaaaaacggtcagagaggaataatcctttt
tcaatcagtgatccaaactttcatattattcttgtctctaaagaagggtg
tcggaattagacgagggatgtcaatattagaccaacttacggtaattgGA
ATTTGGGTTATTTGACTAGTTCTTTTAATTTCTATTCAATTATCacatac
cttattacacaaatattactagtcattctATTAAcacaaatcgaaaaatt
ttgtattaataaaaacccccttaattaaaaccagccatgAAAAAGCAATG
AAATTTGTCTTAATTTTTGGGGTGTTAATtccaaggccgttgaatacttg
cctagtaatattcgtgtaataaggtaatacATAAGTACATTTTTGTgatt
tatttagtattttttttattttgtgactaTTTGGCTACTAGCTGAGAGGC
TCGGCCTACACtgtctataaaaaaaatttcaacgtGTGTACTGGACTTAA
CGCAGAAAGACAGTAGTCAGGTAGTAGGCCGAGTATTAATGAAGATACAG
GATCCTGGCGCAGAATCCTAttattggctgaaaaaaaattctgttgcCTG
TTAACCAATTTTTACCTCTATATTTGATACTTTTTGAAGGTTTGATTGTT
CGTCTCGACAATCATTCGATTTGATAAATCTGATGGCGGACCATGACTTT
GATGCTATATTAACCAGCTCTCCTAAGAGGAAAGTAATTCGACAGCAGTG
GCTCGTCGGGTAGTGAATTGAGATAGGAAGCACAACGCGGGTTCTATTGT
TACGCAAGTCTCCTTTCATGCATATTTCGAACAAGAGGATCATCACGGCA
TGGAAGACTGGGAAGTTACATTAATCGATCAAGCCCCAGATCAATCAGGT
CCCTTCTTTCATTTGAATATGATTCTTGAAGTTTAAGCTCAATATCAATA
AGTTTTTGGTCAATCTTCTAAGTTGGTCTTCGTTTCTTGAGCTTTAGGCT
GTTTTGATTGGAAGCGCgcaaatctgattggttaacaacagcttttttgg
cacaaaatccaaaccaaatgtaaacaaattcaaactgggtcataACCATA
CTCTCACTGAGTAGCTTCTGGTgagattttttattatttagtgTAAGTTT
tggtatggatctccagactaattGGCTACGGACTTGGCTAGTTGGCTGGG
TGGCTAGTTGGCTGCGTGTGGTTAGGTTGAGTAGATTGGCTGAAGTTGGC
TAGTTGACTTTAGCGTGGTTAGTTGGATGCTGACTTCCTCGTCGGGTGAA
AGTAGATTTTTTGTTATTCAATCCATACAGGTCAggatcagttagggtca
gggttagAGCTCGAGAGTCAAAATAGGGTTGGGAGTAGCATTGGTAGAAA
AATAAAAGGGCTTAAAGCCCTGGTAAGTGCACTCCTAGAGTAAGGCCCAA
CCCTGGTGTGTTAATATATATAAGTCTGTAAAACACACATTATGATAAAT
AGATTGTGAATTTGTAAATCTGCCGTGATTTCCGTGGTCTATAGTGCAGT
GGTAGCGTACGGAGTTTCCGAACTATGTTTACTTGGATTCATGTATGGGT
TCAAATCTCACCCGGAACTCAACTTTGacagatttcaaaatatcaaagtt
GAACTCTAAAAATGACTTAGAAACGTCCAAAAGGTTAAGAAACTCTAGAA
AACTCCAGATCAAAGATAGAAAAATACAAGATCTACTCTCACCCGTACGT
AGTTGGTTGGTGATGTTGGTGTGTTATTATTTCTAATCCTACATATTTTT
TCTTAgctttgttatttttctttgcgTCTTTCTCTCCCTATATATTGTCA
GGCAGCATATTGataatatattgctgaatgtcggcaatatattgaaaggG
TGTCCGCAACAAATTGTCAGCTCGAATTGCAATATTCCGAtaatataggg
ggattgtttacaaaatgaaaatctttttttataataggGCACCTGTTGTT
TATtccgtacattacggtccgaaaactATATTATCGAATATTGctcacca
atatattgtgtagtccaaatactttttattttagcaaTAAATTAAGATGA
ACCAAGAAATTTTTAATGCAATGTTTGGGACACCTTTGAAGAAGATTCAA
TACCcaaaagaaaaagagagaaactttcCTTTGTACACACACGAAATTCA
TaccaaaacagaaaaatatgtTCAAGAATTAATACGAAAAAGAGGACTTG
ATCGTCTTCCTAGGACACAAAACGAAACGAAATCAAAGCAATCTAAATCT
GGTGATCATATGCAAAAGATATTGCCAGGTGGTCACCATAATAATCCAAA
TATAAATTCAAAACAACCACCATCTAATAGAAAAGACATTTCGATTGAAC
GTATACCCAATGCCACACAATCGATGCAATCACAAATAAAAGATAAAGAA
TTAAGAGCTGTAAATTCAAGCTCCATTGATATAATCTCATCACAAAATTT
GCTTAAGCCAAAACCAACAACAACAGAACTAGATGTGCCACAAAGAACAA
TCACAAAGAAACATAAATGGCCTACAAAAGTAAACAATGTTCAAGAGCAA
CCTTATCCATAGTTAAACCATCCAAACACTATCCTCCGCAATCCGGGGTT
AGATCATCCAGAGAACATCCATCAAAACCAAGGTTTAAATCATCTCAAAA
ACAATAACCCAGTGATGGATCATCATTCAGCTACCAAAAACAAGTCTGAG
AATACTTCAAATACTGACAATATTAATCTAAAATCATCACCGAAGATCCA
TCCTAGTAATGCGTTGATCGAAGGGATATTCAACAAAATCAAGGTTTCAG
AAGTTTCAGGTTGTGCAACCAAACCTTTAAATGAAACCAAGGATTTCAGT
ACTAGAAGTAATAAGGAAGAAGTTCGCGATAACAAAATCTTAAATACAGA
ATATAAACCGACTAGAATTGAATCATCTTCTTACCGGAATAAAGAAGAGT
CTACTGGATTAAGTACTGATGAAGGCAGTAACAAGGTCAATATCAATCAT
AAACTGCATAATGATTCAAGATTACCACAAAATATTGATGAATCGTTGGA
CATTTTACAGAtgctgaaaaatagaaaatcttttgaaaaggtATGTATAC
AATAGTTAAGGTTCTGATGTTCACTGGAAGTTTTCATCCTTTTTACAAAC
GATTTTTGTTAAAACCTTATTTCAAAATCTCGAGCTCAAAATATTTGCTT
TTTTTGTGGATTTTATAAGGGTCAGAGAAATCATCGtattattgttatat
tatgttaattactTACTAGATACCTTAATAAATACTATGGTATTAATCAT
ATATTGTTCCATGAAAAGTTCCACTTGAAGCCTTCCCCTACCATTCGGGT
AGAGAGAGAAATGACTACAGCTTCGAACTTTTATCATGTTTAGATAAAGA
ATACACTTTTCTCAAACCCCTCGAATCAAAGCAAATTCAAATCACATAAT
CGTCCTTTACAGCAGCAGGTTAGTGGTTACCATATTAATCGTATGATGAA
ATTTTTCCCAAGTTTAAttcgttttatttttttgaaagaaaaaatgtgtt
attttgttttctatactccttttcattcttttttatgatCTAATGATGCG
AAGTTCGAAAAAAGgcaattaatatttttataaaacctttgaaaaaagac
aaaacGAATCCTTGACAAGTTCTGTTAATTACCCCCTTAATGATCCCTGA
TTTCATTGTCATTGACATTTTTCTCCAGGAATCAACTTTACATCCATTCA
GTTCAGATAGGCCCGATAACGTTAATGGTCCAGCTAATTCATTACAACAT
CAACGACCAGTAAGAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00022266TCONS_00022266Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00022266-proteinTCONS_00022266-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000410supercontigsc0000410:159323..169088 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.68	37.1	20.03	17.96	12.02	9.5	7.01	8.25	3.78	4.47	4.97	3.1	3.85	5.4	7.1	7.62	4.97	8.18	4.85	3.7	6.36	5.77	26.37	25.01	16.56	12.12	3.34	3.51	16.36	17.56