XLOC_011262 (gene) - C. hemisphaerica

Overview
NameXLOC_011262
Unique NameXLOC_011262
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000348:169156..176083+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_011262 ID=XLOC_011262|Name=XLOC_011262|organism=Clytia hemisphaerica|type=gene|length=6928bp|location=Sequence derived from alignment at sc0000348:169156..176083+ (Clytia hemisphaerica)
TTTAGATAATATTCAACATAAagatattgaataaaaaaacaaatttcata
aTACACAGCTATGGGGATCTACAACATTGATTATGTCAAGATtcttgttt
tggtgtttttgtttgCCACTTTTTACTGGCTGATGTTACCTGGAAAACCA
GTGGAAAATACATCTTCATCAATTGCTGTCAACACTGAGAGTAGCACCTT
AAAGAAGACAACTAaggtttgttttcttttctttcgtcCTATAAATtaag
gattgaatcataggaatcttttgatttttggtacaaaggtgcaaaatggt
agcggccaaaatgtgacggagcctgatttttggaaaaacaatttttgggt
aaatttcaactaaaaaacggccaaaaaaaagggttttttggacttggtga
aaaattggatcattaattttttcagattttttgcatgaaagtaggtaaaa
tatggcagatttttgtaaaaaaagaatttttcaactcaaaaaacgcatct
ttatctataagaatcactattaaaaaGCATACATCAATNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaagaatttttcaactcaa
aaaacgcatctttatctataagaatcactattaaaaagcatacatcaatg
atcttagccaaattactcaattctttgatgagatggatgtttttttgctc
acgaagtcttgaatatgaaataatatttcaagagcatgaaattttggttt
ctaaacaGTTTTTTTATAAGAAACAAACGACTAATTTTAATAGATCGTCA
CTATTTgtgttctgaatgattgtttaacggtcatgctcacgtagatatca
attatatatgtgttaaatgcataaccaggtaggtccataaaagtatcact
tgttatttacatttttatctATTATTATCCCGACCCCTGAAAGAAGTAAG
TACAAATCAATAACAATCATGTTCCTCAGACTGTGCTCTTGTCCTGACTG
TGTTTCTTgtgtttgtaggggttcgaaataccgttttcccgtcaaaattt
ttgctgaatcccggaatcccgaaaattgaaaaaaataataacaccgtcac
acctgtttgtacaggttcaaataccggcataatgacaaaaaataaggcca
aataccgtcaccgtctgattttaaaatcctgtaataccgtactaaaaaag
gggcCAATCCCGttacaccgtaaaagtacaaccccccttTCTTTAATTGA
TTTGTAGTGGTCCTCTGACCCTTTTATGACTTTGTGGAATATAGAGTATC
CAATTAAATTCTCCTTTTGAAGAGACTCTAAATTATGTACATacttaatt
aaaatatttgtatCTCATTTCTCAGAACCTTCTCTTTTTGACGTACTTTC
CTCATGATGTCCTGGATACTAggcaagaaaatagagcaaaaAATTTAAGA
CTTGCAAGTCTACCCATTCCTAATCGGGCGACGCAGGCAAAACTTACTTA
TataataaaatttcaataagtGTAAAACAGTAAGTAACTTTAAtacattt
ttctgtttttttttttagagtCCTGCTGCAGTTTTGGAGGCACAACTTGC
TGAGAAAGTGGAGGTGATCAAACAAAGACATGCAAAGGTGGTCGAAGAAA
AAGATGGAATGATCGAAAAACTTCGACAAGATCTTGATAAAGCAAAATAT
AATGATAATAAATCCAAGGAAAAACTCGAAGCTGAAATCGACAAAATTTC
TGCTAAATCAGACGAAATTTTGAAATCGAAGAATGAGCTGCAAAAAGAGA
ATGaagaattaaaaacaaaatttgaagagCTCCACAAAGCTGGTGAGAAG
GATGACTCTAATAAAGTGGTCTCCTCCCCTGAGACTGACCACAAAACAGA
TGTCAAACTTGTGCCATTCAAAGGGATGAAGTTGATACACATGGATCTGA
AAGGAGCTCCACCCAAAGTCGAATATTTCTTGGAGGTGATGGAAATAAGC
CAAAAGTTTGGTGCCACTGGTCTTCTCATTGAGTATGAAGACATGTTCCC
GTGGTCTGGTGACCTCAAAATGGTAGCACGAAAGAATGCCTACACCCAAG
AACAGTTAAAGAACATTCTCAACAAAGCCGCTGAACTAAAACTGGAAATT
GTTCCTTTGATTCAGACCTTTGGTCATTTAGAGTTTGTATTAAAACACAA
GGAATTTGCTACTCTTCGTGCTAAGAAAGATGTGACAACCTCCATCTGCC
CTTTGAATAACCAATCATTGCCTTTGATTAAGAAAATGTTGGATCAAGTG
GTAGatttccatcaaaatttaaaNGATAAAGCAAAATATAATGATAACAA
ATCCAAAGAAAAACTCGAAGCTGAAATCGACAAAATTTCTGCTAAATCAG
ACGAAATTTTGAAATCGAAGAATGAGctgcaaaaagaaaatgaagaatta
aaaacaaaatttgaagagCTCCACAAAGCTGGTGAGAAGGATGACTCTAA
TAAAGTGATCTCTTCCCCTGAGACTGACCACAAAACAGATGTCAAACTTG
TGCCATTCAAAGGGATGAAGTTGATACACATGGATCTGAAAGGAGCTCCA
CCCAAAGTCGAATATTTCTTGGAGGTGATGGAAATAAGCCAAAAGTTTGG
TGCCACTGGTCTTCTCATTGAGTATGAAGACATGTTCCCGTGGTCTGGTG
ACCTCAAAATGGTAGCACGAAAGAATGCCTACACCCAAGAACAGTTAAAG
AACATTCTCAACAAAGCCGCTGAACTAAAACTGGAAATTGTTCCTTTGAT
TCAGACCTTTGGTCATTTAGAGTTTGTATTAAAACACAAGGAATTTGCTA
CTCTTCGTGCTAAGAAAGATGTGACAACCTCCATCTGCCCTTTGAATAAC
CAATCATTGCCTTTGATTAAGAAAATGTTGGATCAAGTGGTAGatttcca
tcaaaatttaaaatggaTTCATCTAGGTGGTGATGAAGTTTGGAATGTCA
AAAGTTGTGATCGTTGTCATGGCAACTACACGGATGTTGACTTGTTTCAT
CGTCACATGATACCCATAATGCAATACGTCAAAAGTAAAAGTGAAAATCT
GAGACCAGTTATTTGGGATGACATGATGCGTAAATGGAATGTTTCTGATA
TGAAAGTCATGGCCAAACATGTAGTACCCATGGTTTGGGGATATGTTTCA
GATCTGAGCACCTACCGCAGCTATCCTACTGATATGTGGGAGAAGTATAT
GCAAGCCTTCCCTACCATCTTTTTCGCAAGTTCTTTCAAAGGAGCTTTGA
AACCTTGGTCGAATTTCGTTCCAACCCAACAACATTTAGACAACCATCTG
TCATGGTTGAAGATCTTCAAGAAATATCAAGATAATGGTAAAAAGGTTGA
AGGGCTTGCTCTCACAGGTTGGAGTCGTTTTGATCACTATGGGCCATTGT
GTGAAACCCTACCAGCGGGGGTTCCAACAATGGCTTTATGTCTTGCGATC
CTTGATCATGGAGGATTTGACAAGGATGTACATgagaaaacatcaaaact
tCTTGGCTTCCCAAAACCCTTCCAAACCAATGTCAATTATTTCAAGCTAT
ACAAGCCTGAGAATGCGACATTCAAAGGGCAGCAGTTTTACAATTTTGTG
GGTACTTTTGAGAAGTACAACGGGTGGAAAGAATGGGCGGAAGTGCGATT
AACAGGGTGGTCGAGACCTTACAACGTCAAAAAAGGACATTTAAGTTATT
TTCAACTAAACGAAACAAGACACGGTTTAGAAAAAAGCTCTAGAGAACTG
ATGAAATTACGGGTGAAAGGAAAAGAAGTGCTTTCCAATTTCTTTGACGA
TGAAACAGTTACAGAATGGCTTGAGGATAAAATCGATGCCACTTCCCACG
TCAttgataaagaactaaaacaagTTAAAGAAATGATCAGCAAACATTTT
TAGTGAGTTAAATTTTAGTTCTTATTTGGGAAAGGCTgtaaataattaaa
atatatatattttttgggaACTTTTTGTAATGACTAGATATTCTCTAAAA
CGCCATATCGAAATTTTTAACTCATCAATATGATATTAACTTTGACATtg
accctttaagtgccacggtcattttttaaagaaagtcgctagttcaaact
ttaaaggcttagttctccggatctagaaggagttagaagctcgtttatag
tccgTTGGATAATCttgagtctcctctttcttttaggcgcctTTGGCGCC
GCTCGTTTTAGGGAGGGAggaaaatttttgcattttttttactttttagc
tttaaatctcgctgaaaagactcatttttgattttttttgcttggtcatg
aagcccaatccaatttctaggagttagaccaaaaataacgatttccaACT
CAAACTTGGCTACAGGAGGGCTTTGCCCTCCTTCACAGTCNGATATGTGG
GAGAAGTATATGCAAGCCTTCCCTACCATCTTTTTCGCAAGTTCTTTCAA
AGGAGCTTTGAAACCTTGGTCGAATTTCGTTCCTACCCAACAACATTTAG
ACAACCATCTGTCATGGTTGAAGATCTTCAAGAAATATCAAGATAACGGT
AAAAAGGTTGAAGGGGTCGCTCTCACAGGTTGGAGTCGTTTCGATCACTA
TGGGCCATTGTGTGAAACCCTACCAGCGGGGATTCCAACAATGGTTTTAT
GTCTTTCGATCCTTGATCATGGAGGTTTTGACAAGGATGTACATGATAAA
ACATCAAAACTTCTTGGCTTCCCAAAACCCTTCCAAACCAATGTCAATTA
TTTCAAGCTATACAAGCCTGAGAATGCGACATTCAAAGGGCAGCAGTTTT
ACAATTTTGTGGGTACTTTTGAGAAGTACAACGGGTGGAAAGAATGGGCG
GAAGTGCGATTAAAAGGGTGGTCGAGACCTTACAACGTCAAAAAAGGACA
TTTAAGTTATTTTCAACTAAACGAAACAAGACACGGTTTAGAAAAAAGCT
CTAGAGAACTGATGAAATTACGGGTGAAAGGAAAAGAAGTGCTTTCCAAT
TTCTTTGACGATGAAACAGTTACAGAATGGCTTGAGGATAAAATCGATGC
CACTGCCCTAGTAAttgataaagaactaaaacaagTTAAAGAAATGATCA
GCAAACATTTTTAGTGAGTTAATTCTTAGTTCTTATTTAGGAAAGGGTgt
aaataattaaaatatatatatttttgggaACTTTTTGTAATGACTAGATA
TTCTCTAAATCGCCATATCGAAATTTTTAACTCGTCAATATGGTATTAAC
TTTgaaattaaccctttaagtgccacggtcatttttttctaagttttttt
aaagaaagtcgctagttcaaactttaaaggcttagttctccggatctaga
aggagttagaagctcgtttatagtccgTTGGATAATCttgagtctcctct
ttcttttaggcgcctTCGACGCCGCTCGATTTAGGAAGGGAggaaaattt
ttgcattttttttactttttagcttaaaatctcgctgaaaagactcactt
ttgattttttttgcttggtcatgaagcccaatccaatttctaggagttag
accaaaaataacgatttccaACTCAAACTGGGCTACAGGAGGGCTTTGCC
CTCCTTCATAGctcatgtctgatatatacgacattggcacttaaagggtt
aagattGGTTCAAAAAATTGTACGATgaagtaaatttgaaaaaatcatga
atttgaATAGGTCACTTAAATGATTATTCGGAACATCAGTCCTAAAGTAT
AGTGGGATTGTTTTTACCCTTTTTAATAAAACTACAACTAAACTACAATA
ATTAAAGTCATTCAGTTTTCCCGAGATTTAGTCGTGCAGAACCGATGCAA
ATAATTATAACACACTGATTTTTAAGCACAATTTTGTAATTTCAAGTATC
CAGTTTTCATACagtatatttttatgtttagaTAATCGATAGATATTCTT
TGGCATATAATGTATTATTTTACTTAGGCTAGATCAATTCAATTTGTTGT
TCAATGGTCCCGACTGACTCTGATTTTTCcaatgaagaaagaaaaattta
atttaatgttGAAAGTTTGACTTTGTCCTCTAAAAGAGATTTGCTTTAGG
GTTTAATGGTTCTAGGCTCAAATCGcac
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00020036TCONS_00020036Clytia hemisphaericatranscript
TCONS_00020037TCONS_00020037Clytia hemisphaericatranscript
TCONS_00020038TCONS_00020038Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00020038-proteinTCONS_00020038-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000348supercontigsc0000348:169156..176083 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
HEXDCPREDICTED: hexosaminidase D isoform X4 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.67	6.22	1.81	1.45	4.73	3.15	4.05	4.21	5.52	5.22	5.06	3.39	3.93	3.43	4.43	4.61	4.13	4.96	2.04	2.62	3.07	3.02	6.53	6.33	3.6	3.69	2.06	1.45	4.66	4.9