XLOC_009840 (gene) - C. hemisphaerica

Overview
NameXLOC_009840
Unique NameXLOC_009840
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000271:136296..146570+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_009840 ID=XLOC_009840|Name=XLOC_009840|organism=Clytia hemisphaerica|type=gene|length=10275bp|location=Sequence derived from alignment at sc0000271:136296..146570+ (Clytia hemisphaerica)
ccACTgtgcactgatgcaagttaccctcctATCTTCTTCACACGGTACGT
ACGTacagtattaaaaaaaaagtcatacctTTGCTGTGCTTCCACTCCCC
AAAGACGAATTTGGCGATCATAAACAGCAGCTTCCTCAGCTGTAAGCTTT
GCCGATTCTTCAGATGAGCTCCCAACCATGATTAATATCAATAAGTTTGA
ATTTGTatgccaaaaaagaaaaataaccgCGAAATGtgttcgattttgat
ttttcaaatgtgCAATCACAGCtcgtctaccatttttagttcTGTTTATG
ATAAtctgctgaatcagcagaaattTATGCGGATTAGGCGCTGACGTAGC
AGAAatctttactttcactttcgttttttgaCAAGAAGGaagtttttttg
caaaaaaatgagaaGGAACCTCGACGAAAAGGAACTACTTCCATCTTGCA
CTAGGCACTACAGAAGACACCACTCTTTGAAGAAACTCCAAAATGGAGAG
GAtaaagttttgttttattttgatttcattgcTTAATTTCCAAAGCTGTT
TCGGAGACGCTTCATCACCATTTCACTTAAAACCACTtggtaaagatttt
ttattattgATTATTCAAATAATCAATCGTTATTATGGTTTTTTCATCAA
TTGCCTGAAGTTAGAAATTCTAACACGGGtgctttattttcttgtttggC
GCTCTTAAAACAGGACCCGACATGTAACGGGCGGTTGGTGATTTACGCCA
GCCCTTTCACGCcagtgtcaaaaaattttttgcaaatttagaaatttcag
catCCGACAAAACACCTGACAGCACCTGACTGTCTGTCTGGCAGGGTCGT
GTTATTGATTGTGATCAATCTATCATTTTAGACTTAGGGCCAGTTTACAT
GGATTTGTGGTACGGTGCGTACTGAGAATTTTCAGTACGGTCTATGGTCT
GACAGTTACacatcaaaataccaaaaacattttgtacaaccaccttcact
tcaagataggccaccatagaatgaacttccttttataggatgNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtatggttcat
cctataaaaggaagtttattctatggtggcctatcttgaagtgaaggtgg
ttgaacaaaatgtttttggcatattgatgtaactgtctgaTATCTCATAT
AGTTTACATAACAGACCAGTCTGGGTTTCAGTGCGCCCCAACGTTCAGTA
CGGTCAAAATCACCACACTAAAATTTCAGTACTGTATAGAAAATCCATGT
AATCGTAAAGAAATTTCACTTCGGGTGGttgtaccttaaaggaagaaatt
ttggcgggaagaaaatttggcggatttggcggatttgactgaaatccgct
aAATTAAGtccctgccaaaatttcttttttccgccatccgccaaattaaa
ttcccgccaagttaaacattttgaaaatatgatctcttttaaggtgtttt
tgcatttttttcgctgttttgacgccatcttaaggttaaatttttaagcg
accgccaaattaaattcccgccaagttaaacattttgaaaatatgatctc
ttttaaggtgtttttgcatttttttcgctgttttgacgccatcttaaggt
taaatttttaagcgaccgccaaattaaattcccgccaaatttagtttttt
cgtccatccgccaaattaaattccctctgaaaaaacttttttggccatcc
gccaaattaaattcccgccaaaattactTCCTTTAAGGTAGCACTTTTTA
TTGGGCCGACTATTAACAgaactcaaaaaaaattactatTTTTGACTAAG
TAAAACGAACCTAACTCACACACCTTATTGCTTGATAGTCGTTTGGGAGA
ACTTGaaaggggtttatagacttccaggataaattttgagccttattgga
ccattcgTGAACTTTTGgattctcagatcctaaggtcctaagtcttgtCT
AGCGTTATATCTCTACCCCTCCAAATCCCACCTAagttgggacgagatgg
agtttttacaagctcttatttgatttggttggtcgttaaccagtaataaa
acaagttttttactttttctaaagaacgcgtcatttttacaCCACTCTAC
ACATTGTATGGTGAATTTACAATGGGATGTACGTATGATGGTTTGTCAAC
CTTACTCATTTTCACCGCCCTAAAAACTTCTGTAGCCCATGATTATAAAT
CTTTGTTTCTGCTGGATCTTTggtggaaaaaaatgttttcatttaaaagt
ttttatattatatttataaTCATGTCCCAACCTATCTCAaatttatttct
cattttcaccaTACTAATTTTTTCATTAGGGGGGGGGGAGTATGAGTATG
GGTCCAGACTAACAATTTATGATTCTGGCTTCTGCAAGCATTTTAGCAAG
TTTCTCAATAAGAAAATTATAGGTTATACGCTCTTGCAGAGTTTATTAAT
TTATAGACTTTTTCTCGAAAACAGGTTCCCATATTCCGGCAACTGAAGTA
ACAAGCGTAGATGGATCCACAATGATTACACCAAATGCTTTCATGCAAAA
CTTTGTTTTACCAAGGCAACCCCTGGTTTTTCGTGGAATAGGAAAATTAT
GGCCAGCTTTTGAGAAATGGAATGATGAATACCTTAAAGAGAATTATCCA
AACCTTGAGCTGAGAATGGAAggcagaaaagaaaaacaaagcaaCATTCC
ACAAggtatttgtttttatatttcattGCCAACGTTTAGTACAGTGTAAA
TTAGTTATGATTTTGataagaaattattttatttactcGCGTAATTTTCG
AACGATTCTTGCTATTTAAAGGCTAATCGCTTAAAATTAaatcaaggatt
tattatacactggatatagcATCTGATTTTTGCTTATTTCTCATGTTCGC
AGTAATGatttgttcactctccttccctgattaaatgatttttagaaaca
ttttaattgcgttttatatcgaaaatcactcatcgaatttccaaaagaga
cttaaaattTTCCTGTGAGGGTCAGATTCTTCTATTAATGtagttatgac
gtttcaagttgtgagaaagatgcaaaagatgcaaaagatgtgttctgtat
aagaaattgaatgttgacaccgaaaattttcaaacttcaaccacAAAAAA
ACTACCTTttctccaaaagattttcataccacagtgacaCCAAGACAATC
AAGTCTATGTTTGTTACTTTTAGTTCTTTTGGTAACAGTTTTgtaaagat
attcccaattgaaaatttcgtgttactataagcattttgtttgatttttc
ttgtctaatgatgtttttctcacattaaatttcacaaatgtatccggctt
ggtattttagccttactttcaaagctttttccctgcaaaggtatgaaaag
aaaacGCTAGATGACTTTtcggacctaccttggaggtcctataaattaac
cgatgtccgtccgttcgttcgttcgttcatccgtctgttaccagcttttc
tcgagattggctcattagttttttctgatttttggcacaatgatgcaaaa
tggtaatgcccaaaatgtgacggagcctgattttcgaaaaaaatcatttc
cggccgaaaatgccggaaatatgccggaaaacccgttttttttggcattt
tctcgagatttcattattagtttttttgcacaaagatgcgtattagcaat
gcccaaaacatggcagagtccgctttgagaaaaattcttttccggctgaa
aatgccggaaatatgccggaaatcaccgtttttgcagattttcatcggac
tttttccttataattggttgttttttcacacaaaaacattgttaatagca
aagtccacgatcaagcatggttcaattgtcaataaaaaactgatttttga
agccggaacttccAAAGCTagaaagctagaacatcaattgttttctgaaa
caaaggaaatacaatggtcgctctccacagTTTTATGAGTCATTTATCCG
GTGTCTCTTGTAGCTCCTTGATTAAATCATATAGTACGTTATAGTAGTAA
TATTTGTTTTTCCGTTAATATGATATCTAAAGACTCTTTCTTGTTCCTTA
AAAATACAAGAAGTTTCTTTTATtcgtttttggtttcttttctatttttt
gtagcAGTGCCAGCCACCCACATTCTAAAAAGACAAGAATTCTATATATC
CTATAACACGAAAATGAGTAATACACATAATAAACGGCCTTGAAATAAAC
ACaaattcaatttgatttttcaagggtttTAACCAACACGGGATTTCTTA
ATTCGTGTTAATTACAGGACAACGTCTTCTTATTTTCGTGTATTAAGGTA
TTTTCGAACTTTCCATTTTCCCTTAGGTGACATAGCACTTGGTCGAGATT
CCATGAAACATTTCATTGAAACCTACCAAGAGAAAGATACCAACAAATAT
GTAGTATCAGAATTACCAACACCTCTCTATAAATATGTTAACATACCTCC
CCCTCTAGGTAAGTAAATTAATTGCATTCATTGCatgttttttggtaaaa
aaactAGAAACATTTAATGAGCCTTATCAACTTTATCTCGATCTCGAGTA
TTTCTTTAGGTGTAAGTAACTCACATAATTGTTGGATAACCCAGAATtct
ggcgataacagtttattgAACTCCTATTCACAAATTTGATCTACGATGaa
ttcagcaaaattttttgattgcatAGGCTAAGAAGATAGCGCACATTTCt
tcactcttattttgattggttttgaAATCTCAAGAAAGCTATTATTACTT
TATTACTCTGTATTACGGCAAAAAGCAAAGAATGTTTTAGAGACATAAAt
gataaaaacttttaaaacgaaaattttataattttgacaCTATCAAAACA
TTATGAGAAGGTGTGTGTAGGTTAAATATGGCTCTCTGACCAACTATATA
ACATAAAAGAGCCAGGTCTTCAGGCTAAACGAGGGAAGGAGAACCCTACG
CCATACCAGAGATTTTTCGATACGATAACAAAATCATAGCATCCGAACAC
TTTCATACAGAACTAGCCCATTTATTGGTCTATTAGTACTTGACTGTACA
TTAGTGTTTTGATTCATCAAATAAGGTTGTGGCGAGCTCAAACAACGTTT
CACAGAGATCAATCTATGGATCAACTCTGGGGGTGCGAGTAGCATCTTAC
ATAAAGATTCACCAAACATCATTAACTGCGTTGTGAATGGTACAAAAGAA
TGGAAACTGATTGAATTCAAACATAATCATTTGATTTATCAAGCATGGGA
AGGTCCTCAAGAAGCAGGTATCAAAAAATAGTCATTCTTTTAGGTTTCGC
CTTAAATTAGGATTTTTCTCCCGGTGGGGGGCATATtcaaaaacgaccgt
acgtacagcccaaaattaggcttttgaaattggacccttacagtgcaaag
aaaattcagccaaatttgagtaaatttgggcgaaaaatcgacccttatag
tgcattttcttaaaaagttttgatcattttaaggcaaaatatggtcagat
ttttcGAATTTTACACCCTGAAATTCTCTCTcgtttccgacccttacagt
acgcacgtacggtaggtcgtttaccttgagtgttCCCTGGATCTTTCTGT
AATCGAAACTATAAAAATGATAACCCCTTGTAATTCAATTATTTCTCAAA
TTCAAAGAAAGTTCTCTGTTCCTTAAAATTCAAATTAGACAGAACTGTAT
ACCATTTTCTCGAGTTTCTTGAATTTAAGATATCAGAGCATCCAAAATCA
CGAGTAATTATTCTCTAAACCTGGAGCCTAAATCAATACATATTTAGCAA
GGGTtagaattgaatttgaaaaacaatGGTATAATACAATGttgattatt
tgtcttcagGCTATGGCGGGTATTCGTTGATCAATCCAGAGAAAGTTGAC
GTTGAAAAATTTCCCAACATTTTGGAAATTCCTCAATGGTATCACGTTAC
TGTCAACGCAGGAGATTGTTTGTACGTCCCTACGCAGACGTGGCACGTCG
TCAAGTCGTACGGCAAACAGAACGTCGCCGTGTCGTTCTTGTTGTCACAG
TTTTTTGAGAGAACAATGGAAGATATAGATCTGGCAGAGTGTGGTGATAT
AGTCCCGGGAAAGGATATCTCTTTGAATGAGGTATTTGGTTTATTTGTGT
TTTCTTCACGAGAAAGTTTCTGTTCTAGCCCAAAAATGACGGAGGTCTAA
AGAGAaaggatttaaaaaagattgatTAGGGTGGAGTTTGTGAGGTTTCA
TAAACAAACACAGGACAAATTTTTTGATTCCCTAGGCTATGGAAATGTAt
atttccagatctggaaatcTGGATTTTTCCCTAACTAATCCCTAGCTAGG
GAAAGTGTAACAGCTCCCTAGTTATGGAAATGGAATTTCCCGATCTTATG
ACTACAAAAGGATGTTAAATTTCCATATTATTGAAAAGTGCTTTTCTCGA
GCGAACCCCAATAAACCCCCATAGGGTTACCCATATTCACGAATTAAATC
CTTCCTTTGATTTATAGAAAACTGGTGaaataattaaatgtattcgatca
ttctgtgagcattggttcgatagctctcattcgttctgacgtgtacttgc
gctactttgagaatcccggcacttttgtcacaacagtggagctgcactag
agagccaacttaatggcctcaaacccgtctcaccgattcactgagccctt
gcgacgcaagtACATTGCGAACGAATGAGGTTTCCCTAGTTTCGTTACTT
TCGTGAACTTAAAATTCTAGACAAATgtgatcaaataaaaaacgacATTT
GAAAATGAACAATCCCTAGGCTAgggaatcaataattttttcctgtgaaa
gGTAATAATTCATACATAAATATTAAACTTTATctcatctttatttttta
tagatTGACGTCGATTGGCAATACCCAGGCTTTGGAAACATGACAATGGG
TTATTCAGATATGGTGGATTATATGCAAGACATCGAATTCTTTTTCTCTc
ccaaaacacaaaaattatccaaaaaacgAATCTTTCATATCCTCATGGAA
AGACACGATGGAGTttcattccaaaaagaaaaatgtaaacaaagaacaaa
tcagatttttaaaattatgaatgAAATGGCACCTGATGGAAAAATTACGT
CATCTTTTGTTAAAGAATTGGCGCGTGAACAGTTGAGAGATATTATACGT
TTGGTTGAACCTCATTATTCCGCTGGAACTCTGGAGCATGAATATTCTCA
TTTCACACCTCAGACGTTAAAAGAAATGTGTGAGAATTTAGCGAAGCAAA
ATAACGGGGTattaagaaaatccgattttgtGAAAATGTACTTGGAAGCA
AATGGAAGTTTGAAATTCGCTGAagatttttggtcaaaattagtTGGGTT
AGATTCCATGAAAGATGAAGTCGTGTTGAGTGAAATAGTAGATAATTTAC
CGAACGCTACATTCAATTATGCATTTTACGGAATGGAAGAAGAAGGATCC
GATGATTCCGAAGAATATGAAAATCGGAATGATATCCCTCGATCAGATTT
CGTTTCGGAGCCAAGAGGTGCGATGCCGGATTTCAACCAAAATGagggag
aagaaaaaaaacaaaaaatgaagagTAATTTGAAAACTGAGCTGTAGGGA
CCTGTAAGGAAGATATTTATTTCTTctgaaaagaatttctcaaatttaTT
TTATGCGACTTCGCTTGAATGATGCCTCATCTACCATCTTTGCCTTTACA
AAACTTATTTGGATACGAAGACTTCAGTTAACAAATCCTCAGGAaatgta
ttttttctttttgattcgTGGAACATTTTACAGTATAttcgaaacttttt
tatattttttagataaaattaattttttatacaGTAAGGGATTGCATAAT
TTATagacatttttcatatttatttttgtaagtttttgtAAGTTTTTCTT
AATTTGAATTGACATTGACTTTAAGGTACGGAAACTAGTTACACAAAATC
GACTACAGTTCTTTGAAAACTGTAATTTTTCCGGTTTTGTCGAGTCAGTA
GTTTTAAAGCGAGGATGATATTGGTTATttatcatagcaaaatatacAAA
TTCTAATGATGAACTTTCATCGGAACCAAGAAACATTTTGTGCATATACA
AGTAAGTAAAACGAGAAgcttatgctgaaaaatattttttgaaatgtttt
ttgaatcatAACTTCTGGCTATTTTATTACGAGAAACATTGTTTGTTGTG
TTTCGCTGTATGATTAAGATACCTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00017594TCONS_00017594Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00017594-proteinTCONS_00017594-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000271supercontigsc0000271:136296..146570 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.66	10.32	33.43	37.97	24.52	17.21	37.2	37.86	22.36	25.08	9.65	11.09	6.85	6.55	11.59	7.18	10.61	9.85	10.81	14.48	5.47	4.9	9.5	9.74	11.98	15.07	10.34	7.09	18.52	13.7