XLOC_009309 (gene) - C. hemisphaerica

Overview
NameXLOC_009309
Unique NameXLOC_009309
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000246:45644..53315+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_009309 ID=XLOC_009309|Name=XLOC_009309|organism=Clytia hemisphaerica|type=gene|length=7672bp|location=Sequence derived from alignment at sc0000246:45644..53315+ (Clytia hemisphaerica)
GGACTTTTCACTACATTCTGTCGTGGAAGTGTGGTATGGGTCTTTACAAT TTACATACAGAAAGGTTTCCAGAAACCTCTAGAATTGGTAAGACCATGAA GATTTAactttcttaaattgttcttattttttggcttttctGAGGGAAAA GATATGCTCCgatattttgtattttaggGGGAGGTGTTAACATACATGAT TTTTTAGGATGTGAGggtttttaaggaaaaataagCTCTCAAATTCTTTT AACACCCCCTTATACTGACAGTTAGGCTAGGCTAGGCTAGGCTAGACTTA CCTCTTTTCTGAGTTTGACAAATCCCCAAGATTGGCGAACAATCACTTTT TTTACTTACGGCTTTTCTCTTTGACCTTTGGTTGGTTTCTTTTGTAGATA TCAATGATCTAACCAAATCAAACGAAATTCAATTGTCAAATGTAATCAAA TCTCAACAAACCAGACTCTCCCAATAACTTTTTCCCTTCGGTAACCATTG GATGGGCTGACTTTTGAATATCGATTGATTCCTACTATACTATAGCTAAT AgatcagtctgggaaatcctctcaattgcatgCTTATGTTCCAAGGCCGT AAGtgcgcaattgcacggttatcaaaatggcagaatttttaagtGTTTAA TTTatacacgcttatcgaaattgttctgaaacgggcggtaagcgttaagc aagattgacgggtgacggcttttgcggtaagcgtgcaattttaaaatttc ctttatttttgaCATGCAATTCCTTCCggaagctctgttgaatttcaaaa gcctagggcagttttactcaaaatttatcgtagaagaagattccgtaaaa atggattgcccgttaaaccatgccttcgcccNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNtttattgttcgcttcttttttaaagattggccgggttggaaaagt atgaatttctttgtacatattttacctaccccaaatatttaggaggctga gtttaaacgaatcgtcaagttgaaacgaacgataaatgtatcaaggtctg ttttatttaccccctggtgacttaacaaaagagacttaacttgATGTTAC agtccaattattgaaagtttgtctcggcctttttataatgagctagatgt acgttctctgattacgcaatttgcatattgacattttcgaggcattttga tgtaactgtcggaacataagcgtgcaattgagaggatttcccagactgta gATCCATAATCAGGATTTTAAGAGTGGCTCAGTCGATTCATCAAAATCTA TAGCCAATCCAGACGGTACTacaggggggggcacgcagttactacaagac atgatgtgtagtaagtgcttttttaacactttttttcaggaccaccaccc tttgcagttactacaccttggtagtaactgttttcagaaaagctttccag gtaccacccctgtttttgagtgatatcatcaaaaacatgctcgaaattac cctaaattgcgattatttttcaacccaaagccatttttgtgctagatttt cttttaatttacttggttaacagctgttgggtttgatcaaattttttttc gtccatttataacaaaaatattttttttaacaaggAATTTTTTCACNtcc ttaattcaaaaatcaaaaattcttttttcattcgtgaaaaataaaaaata aaatccaattattgaaagtttgtctcggcctttttataatgagctagaca tacgttctctgattacgcaattttcatattgacattttcgaggcattttg atgtaactgtcggaacataagcgtgcaattgagaggatttcccagactgt agATCCATAAGATTTTAAGAGTGGCTCAATCGATTCATCAAAATCTATAG CCAATCCAGAGGGTACTAATCAATAAATTTTATCGAAGTAATCTAACAAC Cacttatcgattaacaatcgaatgctgagtaccaaaatttcaaaaaaatt gtgagtattggatcactttcttaacaacccttcaaAGACTCGATAACCGt tcgagtactttgattgttattgattactttgattaccaattactatgata tatccttaagaaaaaacaaaaaactgacctaaaaccaaagcacaaaagGA AGCCCCGCCATAAAGATCAACTCCCTTATTTCCCAGCCATTTCCACTGCC ATTTTGTGTGCCTtcgccctgggtttcctcaaaTAACTCATATCGCGCAT TCTGATTGgtctgagaaaacgaaagtagttttTGCGCGTGAATCCCGTGA TTTAATTGGCCGAAGTAaacttggtttcagattattttaacgggctgcta ctggaaacatatttgataaaatcgaaggctggaaagtactcaatacaatc gaaggtattcaatatgatcaaaGGTAATCGAAAAGTAATCAAAATGTCAC TGACCACCTTCTattattatcgatcattattgattacttcgatcacaatc gaacgttcgatacCCAAGATTTTAGAATATAGGctctgaaaaaaatctgt aaaatccaatttttttctCGAGTGCTTCTGTTTGAAGATATGATGTCAGA AAAAACCGGCCATCTATAAGATTCTAAAGAGAAGAAAGTCAAACCGAAAA ACACTCAGCTCAGTATAAATTGAGTTTAGTGGACGGAGATAACATTTTAA TACTAACAAACTGTGATTCAAACTTTAGGCTGATAACAAAAATAATACAA TGGCTGATACTGAAATTAAATATACAGATGAAGGAAGAATCAAACTTTAC GTTGGTTCTTTACCCTTTGACACAAGAGGTCCAGACCTTCATGAAATGTT TTCCAAATATGGAAATTGTTCAAAtggtatatattttttctaaacctTTT TTATAGTTGTCAATAATCCAGGAAGATTTGGCTTTTGTAAGAACTTTTCC AAGTGCAGAGTAATCATGATtactattgttatttttatttttggttgcTT GTGTCTCTTTTCTAAATTGGTAAATTAAGATCTTTTGATTTAATCAAGTT AATCAATCTTAACTAACCTTCTGATCTaaaatcaatttcattaattttaa aatctcaaaattttcagCTAATGTTGTTATGGAGAGAGAAGACGAAACCA GATCAAGAGGTTTCGGATTTGTTGAATTTGATACCCTAGATGAAGCAACT GCTGCTATTGAGGGATTGAATGAAACTAAACTTGGTCATCGTAATATCAT GGTACAACATGCTGGAAAACCAGCTAGCGGAAAACCTCCACAGAGAAGAG GAGGCGGTCGGGGTGGAGGCCGTGGATTTGGTGGCCGAGGAGGTGGTTTT AACAACCGTGGTAGCAGAGGTGGATTTGGTGATCGCGGTAAGTTTAAAGT TCTCCTGTTTCAACCTTATTTAGTTCTCTACTCCTGGAGATCCTTCAAAT TAACCTTGTCCTTGGTTAAGTGTCCTTCAGTCGTCTGATGCGGGCTTTTC TCCGGATTGGAAATATACCGGGAATCGCCGTCTTTGcagattcttttgtt tcaaacaaaaacattattgataacaatgtccaccattaagcatgattcaa ttgtcaatagagctgatttttgaagctggaAAGCtgtataaaacaaattt ttgtttataaaattattaTGTAGTTATAGTTTGTAACAAGCTAATTGAAA CAATGGATCATTGCAACTCAAAATATTATACAttatttctttaatatttt GCCTACCCTTGCCTGAAAACTAAGTCTCAAGAATTGCTAATAAACTATGT CtcatatttttgtcaatttttttaaatcatttttttttttcagtcccTAC TATACGTTTCTTATTTTACTTCCTTTTTATATGTTGATTTATTTCTGTCT TTCTGCTTACACTTTGAGAAATAGTTCAATCAATTCACAATATCCCTAAT TAAACATAGGTGGTAGCCGTGGAGGTAGCCGTGGAGGTTATAACAACCGA GGTAGTGGTGGTCGAGGAGGCCAACGTGGCAGTTATGGAGGTAGTCAAGG GGGTGGTTACAATCAAGGTGGATACAACCAGGGAGGTTATGGTGGCTACA ACCAAGGAGGAGGTTATGACCAAAGTGGTGGCTATGGAGGAGGATACAAT CAAGGTTATAGCCAAAGTGGTTACAATCAAGGTGGCAGTTATGGACAGCA AGCTGGTGGCAACCAAAATCAAGGCAGAAGTGAGTAGAGATTGATCTACA AAAAGTCCTTTTAtaagacatttaaaaaagcaTGTGCCTCATAAGATTTG TGTCTTCTATCATTGAAAACTTTTCCTCTCATATTGGATTTATCTgtcac aaaaaaaatctttactaTTTTGTTCACAATTTCCATGTTTGTACTTTTAA GGTGACTGGTACTGAGTGGTCTCAAATGCCTCACAATGAACGCAGCCTAT TGTTATCAGCCTGGCCTGGCCTCAATAAAGTTTATAAAAGGATGAAGGAA ATCTTATTCATCAGCCTCTGGTCTGAATAATCTTTATCAACTTCCAACAA CTATCAAAGTGGCCGCATCAATAATACTACTGAAAGGCCTTTATCAAGAA GACGGACTTAGAACATCTCTATTATTCCATTCCTGTACCATTGCGATGAC TGTTCGATACTAATACAGAGCACTGTTTAGTATAACAACTCTTATTCCTG GATTATTTCACTCTGTTTaatagttttatatttttccacCGGAGGCCTTT TTGTATATAATTTGCTGGGATTTATACCTTGAtcagttttttatcatttt aacaaaagaaattttatttggtctaaaaattgagaaaaatatttatttct tcCATCACCATCTATTTTTGATTCTAAGGGTTTTCCTTACCTCTCAAACc ttcaaatgttttgataatCTTTAAAAACAACCTTTGATGCAAACTTATTT TTATGGTCTCTCGAGTCCCAATATTCTTcgaatagtgtttttttatcctt aaaaatgCAGCACATGTTTCCACTGATTTTAAATTTGTGGTTACATAATT ACTCAACCAATATTTGATAAAGTAGTACACCGACCCCTTTTTCACAAAGC ATTGACCAACTGAGTTTTTGTACCAATCCATTTACTCTACCTTCCCAAAA GATGATATCATACTTTgcctttttgtattttgaaaacTATATGCAAATAA ATAGTATAGATACAGATAGATAGATTTGTGGACTAACTCGTAATTTGGAG GACTCGCTGGACTGATAACTTGTGGACTTCAAAGGTAATTATCTCAATCA AATTAAGAATTATAGATGCCATAAAATATTGCTGCCATTATGAAAATCAG GTTCTTGCCATATACTAACATTCCTAATATTCCTGTCAATGTAGGGATCC catagaatgcacccccccTGAN
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00016646TCONS_00016646Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00016646-proteinTCONS_00016646-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000246supercontigsc0000246:45644..53315 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
CIRBPPREDICTED: cold-inducible RNA-binding protein isoform X2 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
159.82 148.87 291.41 314.08 1138.48 876.44 810.41 848.38 301 319.49 259.62 267.23 355.37 322.1 374.44 435.45 437.17 445.75 77.68 105.34 376.33 368.94 265.11 241.1 274.8 317.8 389.94 414.69 212.84 209.29