XLOC_008538 (gene) - C. hemisphaerica

Overview
NameXLOC_008538
Unique NameXLOC_008538
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000208:167526..178183+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_008538 ID=XLOC_008538|Name=XLOC_008538|organism=Clytia hemisphaerica|type=gene|length=10658bp|location=Sequence derived from alignment at sc0000208:167526..178183+ (Clytia hemisphaerica)
GTTTTGCTCGCTCAAACAATTTCACGCACGAGTTTACGGGATTAGAATAT
TACACCATATACAAAATACAAATAGCAGGATACAATCGAGTAGAGAAGGG
TCCAAGATCAAGTTTATTTTGCAGAACGGAAGAAGCAGGTCTGATATTGT
attctttataatttttatttataatcTATTAGGTAGGGACACCAaaagta
aaaattgaaattctaaGTTTCCCTTCTCAGAAGGAAGAAAAAGAATTCTG
GTACAGATTTGTCACCTGTCATGCTTTTAGAGAAGGATTATTTTTCCCTT
AATGACACTTGTGTAAAAGACTGACATTCCTATAAGCTATATTGGAAGAT
ACTTACATTTTCATTGTTAGGCTGTGAACATCcttgaaatagtttttttc
atgtaaattcgtcacttttccccgacaaaatttacaatttagtcactttc
acccaactaaattgtccaaatgaaatggtttccttcactagctcgaaaaa
agatcttgtaattcgacgtttaaagcactaatttcggttaataaaggtgt
agaGAATTtagatttggtttgattttggttggagtttaaaaaatcaggta
aaagttttggtcgggtgataaaatatcgggaaaaaattcgtagggggaaa
atttcgtcaccccctcaaaattttcgtcactttcccccgacattttttcc
ccgataaggtatactgCTAAACCCAATGTCATCATACAATTGCTATTATA
GAACtatgaaggaaaccatttcatccTAGAACTAACATCAGATCATTTTC
AtgaatatttctatttttctagCACCGGAGGAAGTGCCTGAAGTCACACA
AATAGAACCTTCCCTCAATACAACTAACCTCATCATTTCATTCCCTGCTC
CTCCGGCGTTACCGGGTATTTTCCGGGGTTATACCGTTTACGTTAGTCCG
GTATATAAACCGGAAGACTTCCTCATTGGACACAAAGTATCTGAATTGAA
ATCTCGCAAACGACGTGCTCTAAATCAGGTAAGCTTGCTTTAAAGGAATA
AAGGTAAATAAATAGATGGTTCGAGATATTGCGCCTGTAGTTCCTTCAAT
GATCCTGAGGAAAATTTCCTGATCATTTTGCTAAACTCTTTTTCCAAGTC
GAGAtagttttttgacttttagcaaGTGAAAAATAAGGACCAATTCAATT
Ttaacgtaagaaccgtgtaagaacccactttcagaaatttcaaatagtct
taattttttcttttcagaatcAAAATACAATGAATAATACCAACTCAACG
AATGGAGGTTCTAATTCAACACATTTTTCGTTAAATAACACGACTTTCTT
GAATAGTACGACGTGTTGTACCTGGAATCGCTCCTTAACTGATAATCTTT
GGGTTGATGGAATGTAAGTAACTATATATTCATATTTTCATACCATTATA
ATGCATATCTCGTGAGCTCGTAGGGGATATTAGGGTTTTATGAGCggacg
aaaatttcatttttcagtctcaaagttggACCCTGACAGTGCAGATAAAA
TTTAGCcaattttgtgcaaattttgcaaagaaccaagaattttcttgaaa
attttagtCCATTCTACGGCAAAAATAGTCAGTCAGTTTCTCTTACTTTT
ACAAACCTACAGTTCCTTTTCTCTCGTTACGGCCCTTAAAGTGTAATTTA
AGAAGCCTGAAAATCGTACCCAAACCGTATCTACGGTAAGTCACTGAGAT
TCTGAGATTTTCTCGGTTCGGGAGAATGGTAATAGATTATATTTGATATC
TTCTTTTTACAGTAAAGTGTACACCTATAATCGATACGGGTCATCAGAGA
ATGAACTGGTTATAGATGGGTTGAATGGAAACACAGAATACCATGTCAAT
GTTTCGTTGAACACAAAATTCGTTGGTGTACATACGCCTGGTGTGGTTGT
CAAAACCGATGACGGGGGTAAGTCTTTTCTTTATGatgtggagtctccat
aactcgaacacgcacgggaaaacaaattttttcttgttaaggaaatttcg
agttatggagtaaggtttataagacattTATATGtcaactgaagggacga
gaaagaaacttgttcgagttaaggagatattcgagttatagaggttcgag
tcaTGAAAACTCGACTGTATCCATTTTCATATAAAGTCCGtaggctttct
tatactatgaagAGATATTGATATGTTAGAAATCATAAAAACCTCTTAAT
AAAGTCAAGTCTTTCTGGTTTAGacccccttctcgcagacccggAAAATt
cgaccaaaatatcgtccctttACGAAAatcttcactgcaaaatattgtgc
tatttttaaATCCCCACTGAACTCTTTGACTTGAATACAATCGAATTTat
atccccagccataaaaagcaTGGGAAAATCAATCCACTATCGAGTTTCGG
TCCGATATTTTACCTCCACTGGCGGAACAAATCTTACCGGGTCTATGAGA
AAGGTGTGTATCTATAGTAAACGAATTTCTTTTAACGAATGTTTTCTAGC
AACGAATGTTAGCATGAAATCTATAGTTTTGCAAAATAAACTTTTCTTTG
CTTGATTTGGAATAacgataataaaattttatgtaatcttctttgaagtt
tttttttggttcgtttttttttcacaaagaaaGCCGACAACATCGTCTCT
AAGTCAACCAACTAATATTCTTCTAAAAATTCTAGTTTTGGTTGTTCCAT
ATTTGTTAGTCCTATAGAAATACCTACGTAAACAGACTTTTCAAGCTtgc
tattttcattttatcagAAGATATTAGTCAGGTTGCAAGTCGAAGATcta
attttaattcaaaaacaGAACCCGCAATGATAAACATACACTCTTCTATT
CTATTCAAGGTGAAAACCTTCCATCACCAAAACAAAACCTCGAAATACAT
TCTCTAACTTTCTGCCTGTTAGCCTTTCAAGCGATATGTATACAAGCAAA
TTTTGACAAGCCTgatagaattaaaaaaacttagtGAACTGCTGCATCTT
ATAATTTCgattttcgaatcttttttggctaattttcgTTACCCGTCAAA
GAGAGAAGCTCATGGTGAAAGAgagtacctcaccaaaaaccggaattttt
tattcactttgattattttgaaaacagatatctttcaagttttttaaagc
aaattcAATTTTCCCTACTACATAAGTTTCGAAAGTTTATAAAGTATcat
aaaaaatcgaatgtttagagcccgaaaaacTAGGTtttaaacatttgaaa
aagtagcAAAGTGGTATAGACGCTATTGCACAGAAAAAAGTCGTGACGTC
TGGTAAGGCAAATTACGGTTAATTCGAACTAATAAAGTCTAGcattttca
aactaaaatttgTTTAACTTCTTATCTGTCTACGTTCTATTTTATCGTTT
CAGTACCTCTTTACTCAGCATTCGATGTCAAATGTCAAGTTAATGGACCA
TACTCCTTCGATGTAAACTGGATTCATTCTTCACTAGCCTATACGCGTGG
CACTCGGACACATTATCGAATCTATTACCAAATCAAAGGGAACCAATCAA
ATCCGATCTCTTACGAAGTTCAAGAAGACCCtgataaaaattatttgttt
atcACTCGATTGGAATTTTTTACATCTTATTTAGTTTGGATCACAGCCTG
GACGAAAGCAGGCGAAGGAAATAGAACACAGGCTATCACTTGCAAGTCGG
GCGAATATTGTAAGCAAAGCAGTGTCGGTTTTTCTATCATTGTAAAGTTG
ACATCTTgctacaatccgtgccataatatatttgcacttttggctaattt
accattttttgaaaattgaagttcgagcgagaatgtcaatttcaggccct
caacttgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGTTCAACGATTCTCAAACTTGTTCGGTAGATCGCTAAAGGTT
TAGAGTGTTATATCGAGACCacctttaaagaaaatttgaaactgGGAGAC
TGATCTTTAAGTTCCACATCTGTCCCTCCTCCTCAAATatttgcttcttt
gtctcatcTCGTCTTGTTTCAAAATTAACTTTATATCATAAAATGACCTT
CGATAATATTCACAAATTGCGATTCCTTAATCGTACTGAAGCGGAATGAA
GTTTTTCCATCGGTTAAGTTTGAGAATAATGTCGTGTACAACTAATAGAA
TAGGTTCATTCTTATCGGGACGCCGCAAAATCGTAGCGCTTTAGAATGTG
GTATTGTTGCCTGTTTACTGTTCTTCACTTTTTTCCAGTTCCTGCCACAG
GACCCATAGTAACAGCTGACAACTACCAATCACCAAGCAGTATTAATGTC
ACGTGGTCAACCATTGACCAATGGAATGGCATCCCTGCAGGTTACTTCAT
CTATTACCGCCTCATCTCATTGGCTGGTAATGACGTCATACGTGAGGAAG
TTGAAATTTTCTCTCCCAACGTCGACCAGAGGTGGATAGTTTTAGCAGGT
TTGGAGGTGTATGGTATGTACAAAGTACAAGTTGCTGGCAAAACTGGTTA
TGGTATAGGTCGTAAATCAGATGCCATTAGAGTTGGTACGTAGCTTTTAT
CAACTTTTTACCACAGTTtacataccaaagattcccaaaaaatGATAcgt
tgatgcctctctgcttgatgctcagtatTAAAAGAAGGATCAATGGTAAG
TGgaacaatccagggagaaagagtggtgccctcccctaccttcgggtaga
taacTATCGAAAGAGAAggcttcgggtcgcctccgactgcggtcacagac
ttacttactatcACAGATTTTCTAAATTATCTTTCGGTATCTCCTGAATG
CTTGATGGATATTATTAGTCTGTCACGTTTGTAAAATGCAGcaaaagttt
tcttcaaaacttTCACATTCTTGGACTGTATCGTTCGAAAAGTTGTTGAT
GGTTTAGATAGTCCTATTTCAAAAGCTTTATCTCGCTGAGTCATTTTGAT
TTCATTAATTTCAGTATTTTCATCTTACAGCAACCTGTCGCATTCCTGGA
CCAATTATCGAGATCAACTATTACGAGTTACCTCCGTATGTTTATACAAC
CGGTAATAGCCAAACAGACCCGGATGGTTTGATTACCGGTGTGGCAAGTC
AAAGTATTGTCCAATGTGCTCTTACATGCACTAGTTTCAACGAGAGTATC
AAGGTAGTCTACAAAAAAGTACGAGTAGCCAATTTGTCTGCGATAGATAC
ACGCCTTCAACTTCAAGGATCTCCAAGTTTCTTGtttccaaaatttgaga
aaggTAAATTAGAGTAacattacacccctgtctcacagccccgttggaac
ttttttctcagTGTGGGTAacaattcctattgaaatcccaatgggggtAG
AAATCcctttgttccaaggttaaaaaattcagtggcaattgttttgaagt
gcaatttttaaacattgaatttcgaattggTATTTCGAAAGGTATTtacc
caccggggacgaaatttttgtcaatctttccagtggggctaggctcccag
cgggtctatgacacaggggtataACATTGGATAAACTACTACTCAAATGT
ACTAAGGAACTTCTACCTGAAAAAGCAGTATTTTAACTCCAAatctaaat
ttcatttttttcaatctcCAGAAATTCTTTTGAACGGAAGTCAAATGAAT
TCAGTTATTTCCCAGTTTTagaattcttcattttcaatatttcatatTAA
AAACCTTTGGATTTTCATTTACTATTGGCATAAATTATTACTTATTTTTA
TACATTTCTTGATTACAGGTGGTGGCGGGAATCAATTCTTTGAATTAATT
CAAAGTCCTGGACCTCTCTTCATCGAGGTTCCACCGACCACCATAGAGCT
GGAAGAAGAAAGAGAAAGACATTTAATTGACAGCATTTTCAATACCCTAC
CATTGATTCTGTTATATGCGCTGATCAATGCTATTTTTGGatgtatcttt
ttttttctggtaaaacacattttaaactatattcatgatatgcacaattg
caatgtcttctgacattacatcacggacccaatagctgattggttgtaag
tgactcAAAATCAGtcacgtcactttcaaccaatcagctgttgggtccgt
ggaagacattgcaatggtgcatatcatgaattctccTTAAGATTGAGCAC
CTTCATCGGGGCACTTATGACGTTTTGCAGTCTTACAGGGCTGTCCCATT
TCATGATACAACTTCGAAATCTTTTCCAATTGGTTGACCCCCCTgaccac
tttcatttttatcaagTTTGATACAGAAGACATAGACCTTTCGGTGTTAA
TCGACCACCATCATCAGTTAAAAACATAGAAATTTTCCAACTTTACTTtt
ctcgaaattttcaaaatatgtccCCACCCATTCAATTGTCCAATCCCTGT
CAGGGACTCAGCGAAAATTATATAGAACAGAACAGGGATCATTTACTTTA
CAAGGCGTAAAAACTTTCGTGCGAGCAAAAACGTATTTTACctattttcg
cgaaagtaattGTCTTTGAAGATTCTTGAAAAGGcaatttgcgaaagttt
atttatgctcgcaaaaaaaaGATTCTGAAAGAAATTTTACTACAAATTAG
ACAAATTACACAAAAGTCAATCAATTGTGTGGTCTGGGTACATTTGAATG
ATCAAAACACTGGTCTTATGCATCGAAAACTTGAGTTTTCAACTTAAAAT
ATACCTAAGTGAAATTAAATGCCGTAAATTTCGAGATTTTTCGACTTCGC
GAAAGTTTTTACGCTTGAAGTATATTGATCATTGCGTTATTTCAGGAACC
AACTGACGGTGAAGACAAAAGATTTCCTCTCTACTCACTGCATGGTTTAT
TTGAAGGATTTTATTTCGCTTTCATCACAAGTACTACAGTTGGGTAAGTA
TCCAGTCATTGTTTATTTCATCGAGTTTCTTTTCTCACTTTGATCTATAC
CATGGGAAGTCAAAAGGAAGATAAGTAAAACGCCTGTTCAAAAATTCTGT
GGATATTTCACAGTTAGTTGTATGGTATGAAAGAGATATACCTCATTGGA
AAGGTAATTCGTCgttgaaaataataattttctgaaatttgaataATTGA
GTCAAAAACCTACGTATTGCGTACATTACACAAAAATGTGAATGGTCTGC
TATAAAGTTGTTCAATTTCACGATTTAAATATGAACCTTAACCCTTAGAC
CACGAGGGACGCGTGTATGCGTCtaaaacaagccaaaatactgagcctca
gacttgaggccatagctcctctgaccacttgatttaaaggggcataaacc
gcttttagaaagagtattaaaatatctttccaatggtaccaaaaggctac
aagcttttatagcactttaaagttttgattttcaaaaaaagagagaaaaa
gtcaaagaagTCAAAGGAAAGACATATTTCAAAGGACAACATTTACACGT
CTATCTCCCAACATAACAAATTCCTGCCCATCCGCGCcgcttttttgaga
aattttgcgAAGTTCTGCTCTGTTAGCATGAGAAGCGCATTTTCTTTCTA
TATCATAATAACTTTAAGACATATTTAGACCTTAAAACCTATAATCTTTC
CAATTACTCTTTTAGATATGGAGACAAAGTGCCCAATACATTTCTTGGTC
GTGTGTTCATTGTTATTTGGACATTACTTGGTATAATATTGACAAGTTAC
GTAGTTGGCAATCTGACTTCTAATCTATCTTCGTACGTcatcaaatcaaa
aatcaccaaaGTTCCTGaaggaaaggtttgtttttttgatgaaattaatt
tttcgcGAGATCTAATTTCGCGTTTTCGCAAATTTcagcctttttcgcga
aaataaaaatgCGAAATCACGTAATTCCTTTTCATGCATCGTTCATTTTT
GATATATTGCTCTTTCAaggttaaggccggtctccacttgcgcgcactgg
gatcgcactttttcgatcaaagcttccacgcttattggtcaaaagaaaaa
tgaaaccgTTCCATTAGCGCGATCTGGACGTAAcgattgaaaaaagttga
aacgtattcaactttttttcaagcgtacgctacatttttatgacgtgatc
ttttttccaagcaaaaaggattgaagctaaAAGGTGCGATCGCAGTCGCG
CGCAAATGGAATCCGCCCTTTATCATTAAGGGGTatttatttttcctctt
ttgccTATTGAGTTCAGTTATTATTGTTCAGTACCTTAATAATGCCGTTT
TTATTTCTGTAGGTGATAGCCGTACAAAGCTCATACGAGTATAAATGGGC
TGAACGAAATATGATGGGATCTTTGGTCAAGGGTGAGCTGCTTAGGATTA
CCAATTTTTTCCTATGATTGATAATCAGTTTTCTTTAGCTTATGATAGAA
AAGATTTTCGATCAGCTTTTAGTACAGTGCAATTTTTGTAGCTGAAATCT
AGAGAATGCTTCTGAGCGCCGGGTTAAGATTTTATGCGTTTTAATTCGTT
TTATTTAATTGATCTATTTTTCTAGATCACATCTACCATTCGCATGATGA
ACTCGTTTCCGAACTACAAAGAGGAGACTTCCGTTACGGCATCATAGATG
CGTATATTGCTGAATACTATAGTGTCCCGATTATCCGAAACGGACTCAAG
ATTCGTTCCCCGATCggtaaaaatgagaaaatcggAATCAAGCCATACGG
AGAATACATCAAATTGAAGAGTTGTATTTCGCAAACGACGCTCGATCAGA
TCGAGTTAGTGCAAAAAGCTGTCAATGATATGAAGGATAGGGTTtgtttt
tactgttttttttctcattaaTTTTGGATCTCCTCACAAAAGGGCTCAAA
GAAGATCTTCAATCTTTCTCTAGCACGAAAACCCTTTACATGGCCCCTGT
CACCGGGGAAGAACCACTAAAAGTCCCTGGTTCTCCTCGGGTTGATGAAT
TTTCATGAAATTCAAACCACGTATGCGCTTCCTTAGAGGATTATTTTTTA
CTCCTTCGTCTTGAAATCTAGGTGCTTTTCCTTGCTGGTTTagatgtttc
agttaaataattACGAAGAATCAATTATTATGGAATCATTTTTCATACTG
CAGAACTTTATATTTCTAGAATTTACAAACACTAGCCAATGACAAAGATT
CGGATCAAAAGAGTACGTCCAAACCtgaagatgacgtcatcagtatGATA
AGCCCGAACTCGAAAATGTTTATCTTTGTAATGAAGATGTTAGGGGCTTG
TTTTGGTGTCTTTTTCATGGCTGGATGCATATACACATTATGTAGAAGTC
GTATGCGAAATAAGGAGAACATGAAAGTACATACTGATTCAGGTATAACA
GATGATTAATTAAAGCATTCTTATTGGCTTATACTGAGTGTTACGTCATT
TTAAACCAATAGAAGGGgtttttggaattatttttgacggatttttggca
aaaaattaaTGTTAATTCCATTTATTCTTTCGGCTGCCATTTTTTTATTT
GCACAGCAActttaaaatacaaaaaggCCTCTAGGATAAACCCATAAATC
AAAGATTATATTTAATCAAATATATATTTCTATTGCTAGGATTCTCTAAT
GGGCTCTAACGAGTTCGTGTAtggagggtggaggatatagtgtctggggg
atagtgaaaaatctacaaaatttgccctgtacggggggtaaacttgctct
gtttgggtaATTTTTCTCGGTTTGAGAgttaattttgaatgtccagcaGG
TCAACTGATATTTGTCCGGGGGTCAGATCTGCTGTTCGGGGagtaaattt
ctaaaaagtgTTATATCCTTCACCctccaaatttaaattttttctggaaa
agcccaatacgaTATTCTATTTTTTTCCGTTTCAGAAATGCTTCTTCAAA
AGCAAGCCAGCTTACGTCAAGAATGGCGTCAATTAATTGACCAATGGAAA
CATaatatccaccattttgaaaatttcattcaatcAATCGACCTGAAGCA
TGCGCGCGAGATGCGAAAATACACAACCGACATTTCGAANGTTTCATCCA
ATCAATCGACCTGAAGCATGCGCACGAGATGCGAAAATACACAACGGACA
TTTCGAAGATTATCGGTGTCAATTTTAGATACGTGAAACTTTCGGAACTA
CCTGTCCCCATATCTTTAGTGATGGAATTTAAAGAAGTTGAAAAGCAAAA
AACGAAATTGAATCGTTTGAAAACGAGAATGTCACTCAAAGAAAAAACCT
CTTCGTTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00015263TCONS_00015263Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00015263-proteinTCONS_00015263-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000208supercontigsc0000208:167526..178183 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.17	0.13	0.19	0.1	0.92	0.64	0.41	0.63	0.95	0.88	0.95	0.9	1.21	0.77	0.68	0.53	1.15	1.63	1.13	0.95	4.4	3.34	1.07	1.92	5.83	8.14	0.58	0.4	0.31	0.28