XLOC_007688 (gene) - C. hemisphaerica

Overview
NameXLOC_007688
Unique NameXLOC_007688
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000173:18171..26528+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_007688 ID=XLOC_007688|Name=XLOC_007688|organism=Clytia hemisphaerica|type=gene|length=8358bp|location=Sequence derived from alignment at sc0000173:18171..26528+ (Clytia hemisphaerica)
TGAAATTTGGTTCTTTTACTTTGCAGTTAATTTGTTTTGGGCACTAAAAT
AGGTAATTTTTCGATTGAACATTTCTTTCCCTGAATATcaatatttgatt
ttcatttttttgacaaaCTCTGTTTAGGCAAAATTGATATTTATTTGGGT
CGAAGTATTAGAATTGTAGCTTTTGCGTTTTATAATCtcttgatttttga
ttgaaatactCAGATTAGAAAAAGAAACGTTAATTTTTGAAAGGcattaa
ccctattagccccaagcttttttaactcttgtatccccaggggggggggg
ggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNgggggggggtagaatctaccaccctcgattattttcga
tctagaagagctatggccatgaaatttggtacagatgttctccatcatga
tacaattttccatgaaggaaaaaaaattgatgacgtcattcaaaaactga
tgacgtcatcacaaaatctccacctgttggaaaaaagccaaaatatatgg
tttacagaaatgtctattacagtcgaaccaataaagatatttcgattctg
tttaaagattctgaaaggtaaaagactgttctttaacataattgccgNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNattttttcttaaaatctatgctgaagatgagtaaaattttcaa
aatttgatgacgtcataaatgatgacgtcatcattttcaaaaattttctt
taaatttttttaatttgtattatcaatgcctatcacgtgtcaaaatttga
aaatgattgaataaatagtttagaagttatcagcactttaaaattttgag
ttttaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttc
cccccccccccccctggggctaatagggttaaaaggTGATGActattttt
taattatatttgtTGCTTTTCTTTCTTCAGCTCAATTCGTTCGTGGAACC
AAATCAATAACAAGTTCAAGCCCTCCTGCTCACTACGCTTAAGGTTTGTC
gatatataataaaacattttaatttagttttcttttctcttggtaaattt
gtttttgatttatattatttttttttgaaaatatgaggGTTGTACCCTAT
CTCGCTGCCCCGgaggaacttttttcctcagtggggataaaaattctatt
gtttcaaaattaaaaaattaagtagTAGTGTCAATGAGTGCAATtcttaa
acattgaatttcgagtaaGAATAGAATCAAAGTCAATGTtttagtggggc
tgaaattccagggtattttcccatcgGGAAATGTTTCTAGTAGGGTGGGA
TCACAGtggatctgtgacacaggggtgtaaacaTAGACACGTGGATAAAG
ATCGTAATACGGAAATAAGTGATTCGTCAAGCAATTTACATACCTAAAAA
TGGGCCCGCCTTTACAGTTAGTCCTCTACGGTGGATTTTCGAACAGTATG
TTTGAAACAAAAGGTTGCAACTTGTTGGCTAACCCACCATTTAGAATAGT
GTCTATTTATGACAATTAAACTAATGTGAAACCGGGCCAGTTATTTTGTG
TTCATTCACTGTTACTGTAAAAACATAGCCGGTTGTGATTGGTTCAAACC
AGCTTATATTGAAAACTGTATTAACTTGACAGTCTTAAGCACTGATCTTA
AATATTAGCCTAGACTGACTCAAGAAAGGGGGCGTAATAGATGACTAATG
TAAGAAATAGAAATTCTATCGTgatactgaattttttttataagataacT
AGAAAATCAAAGATGGAAAAGATTTGAAATAAAACCTAGTATACATCAGC
TTGGGATCTTTTATTGAGATGGTATAAATCGTGTAGGAGAAATGCCTAAA
GTAAAAATTACATATCGAGGTCCTTTTGAATATAAAATATCCTTCTTTCA
AAACGTCCAAATTGGGGTATGTACTGGACATTATTTAGATGTTTTATTGT
ACATTCGCTTTCATATAAGATTTAATTTAAGAGCACAAAGACAAGATTTT
GGTTATAATACCATCAAAAAAGAATTCTTGCTGATTGTTCTTTCACGGCT
TCAATCTCAATGGCATtaagtctttttttaaattggaaTTCAAATCGGAT
TATCCTGATTAATCATTTATTTTCGTTGCATCTTATTTAACCCACTCATT
TCTCTTGTAACTATGATTCCGGATTTAAATTAATGTATCTATTTTGCTTG
CATTTTAGTTCGTTTGGGTTTTATATTTCGTACACGACACACTCAATAAA
GCGGTATTAATTAACAATTGCACTAAAAATATGTTTTATTTAATCAGCAA
CAACATAACTCATTTCATGAACCCTAATCACATGATTTCCTAACTTAAAC
ACTCCTATATTTGTATATGAAAGATCTATAACTAAAGGATGATCATAAAT
TATATATTCATTTTTATGGCTGGTCCACCATCAAAATCAGGACTTCAATT
CTGAATTCATCTGTTACTTTTCTGCAAAACACCCATTTATTTGCGACAGG
GGTGTAACAGATGACAATGAATAAGATTGATTTTAATAACTGCGTAGATA
AAATGCAAAGAATTCAAATATAATTCTTGCCAttaaaatgtcactttttt
aGTTCCTTTATTCAAAAGGGAAAAAGGGATGGCATGAAAAGTACAGGCAa
gctttaaaataaaatgttttcaaatacaCGCCTTCGTCGAACTCAAAGTG
TGAGGTCACAAAAGATCGAAATTTCTCCCTCAAAACATACAAATTAGGGT
TTATAATGAACGTTATCAAGATATCCGTTTTTATATACTCGCTTTTCAAA
AGAAGTAACTCAAGGAAAATAAAGGCAAGATTTAAAACTTGATATAAAAC
GCTTACCAATATTTCcattaaaaactttcttttcgTCTTACTAGtattaa
ttttattttgcaatCAAATTTGATCGGATTAATTTGCTAAGCGACTTTTG
AACTTTGACTTTTGATCCatctttttcattgttttactTCTACATTatgg
ttttgatttttaatttaatatGATGCATTTTTTTAATCTAGTCCCTCTTC
GGCTTTCATTTCCTACATTACACAATCTCTACAGTGCTCTTTAACCTTTG
ATATCCCAATTataaattttatcattcaaaattCTATTAATCTAACgcta
aaaatttatttagactTCCACTTCATTTGTTTATTGACGCTCTGGTGTTA
GACAAACAATTTAAAGGTCAATGAGGCTCATAATTACCAAATGAAATAGA
CACTTTAAGGAGACTGCTGAACTTAGATCTGCGGGATATCAAGCAAACTT
CCAAGACAAAAGAACAGAGGATATAAATAGTAGTTCTTTTAAAACACCAC
TGTTTCCTATCCGtggtaaaaattttttctcatagTTGGGATAAAATGTT
CCATTCAAATCTAAATGGGAATAAGAATTCAATGTGCTTTTATTTCATGA
GCTTTTCTTTGAACGTGGAAATGTAAAAAACACAGTTCTAGAAAGGGGTT
tggtttttcaagaaaatcaagaaaatggCCACAAAAACTCATGAAAGTAG
GATAGTAAAATCACAAGCATCCAGCGACGACCTTTTTTTTAATATCTGCT
GTTCACGTATATTATTCAACCTAAAAAATCTGATCTGTTAGTCTCAATGC
TGGAAAACTCCTACTCCTAGAAATTCACATCTGTTGTTCTTCGATTCCTT
AGACCCTAGCTTTGTACGGGCTTTGTACCCTGTCCCATAGAAAGTTTGAT
ATGCTGTTCCGCTTTCTACCCTGTTTAAGTGTCTCAAAAGATGGATCTGC
TGTTCATGGGGTTGTACCCTGTCTCAATGTTTAGAAATTATGATTTGCTG
TTCTCCAAAAATATCCCGACAGTTTGTACTGGATAAAGTATTCATTATAA
AATTATTACCTAGAAAAATGCTATCTGCTTGCCACTGATTACGTTATTTC
CTGTAATAGAACAACAGATGTTTTGAATTAAATTGAtcctcctagaaaat
gagacctgctgttaatttttcataaaaaaccgtCTCCTAGCAAAGAAAAG
TAGATATTTCGTAAAAATGGCTCTTTAAATGCTTCTGTAAAATTAACGAA
TTTTCGTGATAGAATTTCTCTATCCTCTAAGGCTCGAAACTGATCAGCAA
TCACTCTCTTGTTTTTCAGATTCCTTCAAGTTCTACTTTCTAAAGAGAAA
CcaaatccataatggcagcTTCTGGTGACCATGACAACAATGACACCAAT
GGCTACTCTTCATCGTCAAGCAACGAAGACGAAAGCACAGGATATCCTTT
CGACTTTTTGGAGACCGATTTCCAGTGTATAGTTTGTACGATGGTGATAA
GAGGGTTCACAGAACTGCCATGTGGACATGCAGGATGCAAATTCTGCATT
GAAAAATGGGAAAAACAGAAAGTGTAAGCCAATacattttaacaaattta
ataACATACACTTACAAACATTTACGAGGTAAAACAATTACGAACCTtcg
caaattttagaaaaaatatagtATATTTCCCCAATAAACTTTTGGGCATC
GttaatcaaaaactttttaaacttcTTTTTAAAGTGGCCAATATTTCTTC
AGTCTAATAAAAATAGTTGTTTTATAACcactttgttttattttactttt
cagAGTCTGCTGTGAATGTCAGGAATCTTACGACAAAACCAAGGTAAATT
TCAGTCTTCTTCAACAGATAGAAAAAGCTATTTTGAGCCTAAGTGCGTTT
AACAGTTAGGTGTACTTAGACTCTATTTCTTTAATCACTAAAAAGtgatt
tgaacaaaaaaaaaggaataaacTGATATAGAGCTAGCCGTAATTTTCAT
CGAACACATATAGTTgaatttgctttcaaaaggaatggtatTAGCCCTAT
AGTGATTTTCATTAAAAGTGActtctcatctgagacaaaattctgtcttc
aaatgCTAATAAATATGCCAAGGGAGTTATTTACAATTATAATTTCAGAA
TAAAGACCATTTAGTTTTGGCGTCTACTGAAATTTAGGCAAAACCTGAGA
ACAAATACAGAACAATCTGAGCCAAAGATTCAGAAGttactgagaagtac
agatTTCCTTTTCAATTAATAAGCCAAGTACACTTAAGTCTTCAAGCCTC
ATAAAATTCAGAACAGTCCAGCCACAGAGCCATAAGTTACTGACTTTTCT
ATAAAAAGTGTGATACTGCtctcatatgttattttacacGATTAGTGACA
TACAATgttgaatgattttttaagcTACGCGGAGCACTTAATAACTATTT
CTGgtataaaaaagggaatttccctagaTTCAAGATAAAAATGCTACCGG
GACTCCATTTAAGCGGAattaaaatgctgaaaaacaagcgcaaaattatg
agatgtttgcctaACTTTCTTATACGCGAAGCTATGGATGCCATTCTCCG
TCActttaggctccctgcggtggcaaaaaATGCCCTCCCCTTTTGAAATA
TTAAAACAATTGAATAGTTTTTACACGCGATGTCTTTGTCAAATAatgtc
aaaattaatttttagaaGCAGGAAAGTCGGTACAATGACCGAAAAATCAA
GTACGAAAGACAAGCTCGCTGCAAGCAACACGAACAAGGCTGCACCTGGC
AAGGCTCCATTGCCGATTACAAAGATCAGGTATGGACTTCATATTTCCTA
ATTGGTTGcgatttaaagaaaattaattttactaTCTACATAAATTTCAG
CAAAACTTAAAGTgagtcaaaacaaaacagaacaCCTGTGATTCTACAGT
ATGTctacaaattcaaaaattttgagatttgttTTGCATGtttaaaaatg
tgttttttaacctttctcaaaaaaataacaTGCTCATCAACATGTCAAGA
CTTGTTTTCATGTAACTTATAACATGTTCAAAAATAGGACATAAGTTTTG
CGCGGAAAACTGTGGGTCTTCGACATGGTCATTTGTACGTTAAAAAAACG
TATCAGGATGTATATTTTAGAAATGCTtgtgaaattgattttttgccttt
ttttgagaaattatgGAAAAAGTCTTTTTTGACGACATAAAACTTAGAAT
TTTAATATCTCCATAAGAACTAATCAAAAGTTTATGAGATTTTGCCCAGA
GAGGTGTTGGTAATCTAtcgtgaagttgggtaacttgcattagCGAAGgg
ttgcatagccctcaaatgaatgacctggctggtcattaaaatgcaaagtt
aaatcaagagaaaaatggtagaaaagagtagcgagcagagctgcatagtt
aatttgttttgaaattttgctgcttttattggtcatttatttgatggcta
tgcaagtttccctccactgatgcaagttacccgatttcacagtataactt
ttgaaaaagaatgttgttatttttttaacttttccgATGATTTCAGCAGA
TATTTGCAAAAACTTATTTTGTCTACAAAAATGATGATatcatcaatttt
caatttatttttcatgaattgCTTCCTCTTAATAATATGCATCTAAGGTG
TAAATGTGATCCTATTTTGATCATTAGTTTTTgacatattcaaattttaa
ttttgatgacgtctCATCGTTTAAGTTTATTTAGAGTAGAATAACAATTA
TAATAAAAGAGTTAGACATATATATTTTATACATAGCATCGTAAACGCTG
TGGTTTCAAAAAAGTCAGATGTCGTCTGTGTAATCAAAAAGTCGTACGAC
ATGAAACAGAGGAACACAAATTGACGTGTACACATCGTTTGGTTAATTGC
ACAAAATGTGGTGCCCAGTATAGCTTCATCAATAAAAAGGTGctactttc
atttttcaatttggtTAATTAAGATAAAATACCCCTGTTTCAGTAACTTA
GTGAATAGGAAAAGCAAATTCATTTACGTTAGGATAAAAATCCTACATTG
TTCCTATGTAAACCGTAAAGCAGTTAACTTCtgttaaaatacttttttgt
tTCTCTCAATAAATActcaaaagttatgattttaTTTGGATATGTGACTT
GAAGTAATCCCTGTTTGACAATGAATTCCCCTTGTCAGGTTTTTAGAACT
aggaaaacaaaataattgaggTTGGTTTATTTAAGCTAGCATGCAATCAG
AAATTGCATGCAATACTGTTGCCCACCCTGGCCAACAGTATTGAAAGTgg
gcttttcaaaaaaaaaaaccgtataccccctgttgaggaggtctatccct
ctgtggctggaaatgctgtaaccccttggaattccaggcaatttcagccc
ctctggaattctgaattttagtaggatttaaaagctacccccatggaatt
ccagttatttttgacagatttttgtatctccttATGGAATTCGGCCACAT
ATCAAACACTACCCCCTTAGAACGGAAATGgagggtttttttctggaaaa
gcccatttcaaAATTACGGAGGCTTGAGTATCATGCTCTTAATTAATTGG
ATTCGTCCAGTCCATAAAACGAGTACCTTATGAGATTTCTTTACCatctt
ttcttgattttatttttccattttagaAACACGACGATGAACAATGCAAG
CAGCATTTTGATTATTTGCAATTTGGTTGTCATAAAAAGGTGACGCTAAT
TGCCAAGGGGTCGGAACAAGCAGATATTCAACAAGATGACCACGGCTTAC
CTCATGGTGGGGTTATCCCTGAGAAATATCAAGAAATCACGCAATCATGG
GTCCAGGT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00013758TCONS_00013758Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00013758-proteinTCONS_00013758-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000173supercontigsc0000173:18171..26528 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.06	0	0	0	0.06	0	0	0.93	0.46	0	0	0	0	0	0	0	0	0	0	0	0.05	0.15	0.16	0.06	0