XLOC_006703 (gene) - C. hemisphaerica

Overview
NameXLOC_006703
Unique NameXLOC_006703
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000134:182723..190102+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006703 ID=XLOC_006703|Name=XLOC_006703|organism=Clytia hemisphaerica|type=gene|length=7380bp|location=Sequence derived from alignment at sc0000134:182723..190102+ (Clytia hemisphaerica)
NNCCAGCCACAACAATAGTAGCAACTCCAAGTCAATCAGTTGTGACACCA
ACAAGCTCAGCTGTCGTCGTAGGTAAGATAACTTGATTGATTATCAATTT
GAAGCGAGATGAATAATCGTATACAAATATTTTAGGATCTTTAACCGATA
GTATAATAATTACGATCGTAATTGCGAAcgagcaaaaattaaaaaaaaaa
caatattggttctcaacttcagttgagcaagaatctcagaatgtttttgt
ttgtatGTCCGCAAACTTTGATACTGCGTAGAGAGCGGAATAATTGATTT
ACGGAGCTGAAATTTCTCACACACATTCCTTAGGTTGAAACTTACTTTat
caatttcattaatttgtCGCAACAgtaattaacgtctaacggtcCACTAT
TTTGACTATACATTTTCTATCTGATTATTTAGGTTGGTCACAATGGAGTG
AATATGGATCTTGTAGTGTGACATGTGGTGAAGGTCAAGAAGTGAGCACA
AGAACATGTCCGAAATCACCTGCGTCCGAATTTTGTCCGGGTTCATCAAG
CCGATTCCGTGTCTGCAGCAAAGAAAGATGCATAAAAAGTAAGTTTGTTT
GTTCTTGATATGGACAGACCGAGAAAAGTGGATTTACATGTAAACTTACT
CCTTGGGGTttcgctaattaatttttgggaaaatgtttttttgccctaat
tctgctttATTAGActcctttcaaaaattttgtcactCAGAAccttttta
ttccaaccccccccccacttattaagttttgatgattttttcaccCAGCC
CGCGTATTCCAAACAAcccgtttattaggtacccgagagtatgccCTTAA
TCCACATGAATAGAAGTTTCTATCAAACTTTAAGGCAAAACAACCAGTCT
TTTAATTAACTTAACTGCACTTTTTTTATAGCGTGTAATGATATAGTTTG
CACAAAGAAGCATACAGAGTGCAAACAATACAATGTGACACGTGATGCCG
CATGCGTGTGTAAAGATGGCTTCTATTTGGATTTTAAAGACCGTTGTAAA
ACAACaccaattattttcaaattacgTATAAGATTTACAATGCCATTCCT
TGCGTACTTGTTCGATCTACTGAACGACTTAACCGTGNACTAGCAAACAA
CGCAACTGAATCATTGTACATTTATAACCCAACACCTCCAGATATCAACA
CTGCTATCATGAACATTAACGGTACCGTCTTATGTTTCAATTAcagacgc
tctctaattcgatcttcaagggggattggattttcatcgaataaggtagc
ttatcgaataaggggacgtcgtttatgagagtttcttgttgacggggact
ttcaatttcatcgaataagagagcctattgaatagtagaacgtcgaatta
tagagagcgtcaactgtattaatATAGCTTCCGTCTTTAACCAAAGTCCA
Accatctacaatcatggtcgtaatcttttagaaaaaaaagaaattccacg
aaTTTTCAaagccacaaacgatttggaagtgctctaagttaggttggaag
ggtagagtttcaACTCTGagtttaacgctagacttaacacttaggacctt
aggatccaaaagttcaaaaatggttcaATAAGGCTCAGTATATAGCCtag
aagtctataaacccgtgccaaattgaaatatccgattaaattaaagcaga
tgagctggagtttttataagatacattaataattggtcatttgaggtggt
agagatgacgcgttctttagaaaaaagtaacaaaagtgTTAAAgttaaga
gcttgtaaaaactccatctcgtcccaattaaagagatggcccaaaatcga
ctttctcgcccgaactccaaatttcgaaaaacgaggaaataagctagatt
ttgaccatgattgtacacgttttttatgtaAGAGTATCTAAGGTTTTATG
TCagagtttgaagtttttgatttttttttgttgcgCACTTGAAAGGTTAA
GTCATTTGACTCTAATAAGCTAGTATCAAATCATTTTACATTTTGAGAGT
GTGCATACGAGTattcaaacttcagtcccactctCTCTATTTATAAGAAC
GATTTAATTTTGGTTGAGTCTTGGCTGTGTTgtaataggccttttcataa
actGCGTCACGAAcaacacttgcctcgttttgaaacgaTTACCATAAGGT
GATTATCTCCATTGAGACCTTAAATCATACTTATATGAAAAGAGTGTACT
TCTAAGAAAATTCGTTGGGAATAAGTTGTCAtagaattattttgaaaact
aGGCAAacgttgctcgtgacgtaatttatgaaaaggcctattctTTTTTG
GTACTTTTAGCCTCGTGGCTCTTATAAAGTTCTTTTGATATAACAAAAGA
GTGTATTACATTCATATTCTATGTCTTATCAATTTAGCTACTGATGTTTG
CGACATTGGGACATCAGATTGTGATCCTAACCGATCAATGTGTGTTATGA
ATGATGACGAAGATAGTGATTTTTACAGTTGCAGTTGTAGTAATGGATAC
TTAAGTAACTCCACAACACAGTGTTTGGATTACTGTGAAAAGGGCGTCGA
TGATTGTGATAAAACATCTACTAACTGTACGGCANTTACTGTGAAAAGGG
CGTCGATGATTGTGATAAAACATCTACTAACTGTACGGCAACTCCAGGCA
TATTACCACATTATAAATGTGAATGTAAGCTTGGTTATAATAGGAAAGAC
AATACTACGTGTGTGTTGCCACCGACTGGAGAACCAACTACTGGCACGAC
TGATGGTAagaaaagttattcaaaatacatgaaaatctaaaatttgtata
ctttaaaagtttttcaagtttttaagaCAACACTcgtgaaattttattca
aattttcaactcttttagagcaatcttaggtcaatttgcctgactacCCC
CCGCCCCCGGATAATAAACTTGTGCTTCTAGATCATTTGGTTTtctttaa
caaataaaaatcGAACTCTAAAACTTTAAAGATTAcatcaacggattaga
ataggtggattaagaactcatagaaaacactcctcgttaggttatcaaac
ttttttacgagtttgctagcaattaaaacttgataagttgtaANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGag
tgcgcagagtcatttacagatttttcttgtaacaatgagaagacaatgga
tctctcttgggagcaacgagagaagttaatccacctattctaatccgttg
attACATAAAATACAATTCCCATTTTCGTTTGTTagttgtgatttgattg
gttcggGCCACATCCAAGGTCCTTTTTATCGAACATGGTTTATACTTTTG
TTCTCGTAGAATGCAATCTTTTCTCACAGTGTATATTCATAAAGTGCAAT
ACTATTTGTATTACACTTCATCATAGTATTTAGAGTACATTATACAGGTT
GCAAAACTAAAGTGTGAAGACAAATCTCGTTTTTACTCAAAATgtttaca
gtatgtggcccccaaaacggcgatcaaatttgaaatttctctcaaatcta
gaggaaaagagattttacaaaaatttttgctgcatgaaaacctttaacat
ctctactttatttcctagtagttctttttcaaaattttcaattttaacaa
tatttttcaatcgcttaaagataggtagcttttttctaatggcccctaaa
acggaggtttgaaattttagcgatttctcgagatatctttaagatatgaa
tacaaaattttgaccatagttttgaaatatgatttagagggttttgggca
taaatttatttgataaaagttttacAGTATACCTCTGGTTGTCAAAAttc
aggtttggggcccccaaaacggaggtgtagttaaaatcaaattattaagc
caagtggtaatagggggaaaaactataatgaacatatttgtgtttcccct
taaatttacgaccccgatggatgtaaaatttatggtttttatgaaatatt
tcaagattttcgatattgcaaagtccagactgaaaatttagagattttca
aaatgacatttttgatttaagggctctgaccatagtccaaaaattgattt
tgtatttgaacataaaagttatatttcaggttccttaacacttttaacaa
agaattgcctttataatttgctttttaatcgaatcccttaagagtaatta
agaatttaattgcaaaaatgacgttatgaactttaaaaagatgttaataa
tatgttgcatcaccctcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatgttgcatcaccctc
ttttacaaaaagtgcttagttttaatgggtaattaacttttttgtttcaa
aatttctttacactgtccgcaaagaattgaactattttaaattttgcgga
aaatttttctaaaaagatgggtcaaaagttatgactgttttttaaagcaa
aatccagatgaaaaattgatgaaaaaccactattttgaagatttcgagac
aaagaggcatttacaaaaattttccgcaaaaatatttatagttcggtaaa
agatacaccatctactgcgaaaaatctttcaaaatgttctttcttcgccg
aaactaagctcttcaaagttgaaatactcttcctcgcaaaagtcttcatt
ttcttcttcatcaaatttattcaatgcaaattttaaattttcagattcag
gaatagtttgtctaacagaaaatgtataacatgccatagttttgttgttt
acatcagtcagaaaacacattttatacacgacaattatgaaaaattcact
atggtcagagcccttaacaacgttttaatcaagtttttgaaaacaaatct
cttttgaaaatagttccattcatgtatggaataagctttgaaaattttag
aaaaaatgcttaactgaaactgaaaatattaagctttaaagatatttttc
tcctatgttttgcaaaaaaatgacagaatttgccgtNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNgattcagcgaaaaattttatatataa
tgttaattttttgttataaactattaactcaaggtgataggaatagaatt
ccaagattttttgcttttcctcatatttagaattttcggttttgtcaatg
ctgattctcgGGCTCCataatactggttgaccttcaagatgctatatatt
ttacccagcctctaaagtcacagatgtatttgcattttctgaacggcatt
aggtgtagaaagtttcctataccccgttttcataacttattttcaatatc
gaAGGAGCTAGAGtaagttatatgcaatttttatctaattttggtgtcaa
aatatttcctttggacgcaatatgttattttgaatctgtctcaaactagc
aaaaacatgctcatttttaagtataaccatcattctttcaaaacaaacaa
aaatcgtttaattctgataaatctacaagtcagaatcttcattttaatga
aaacctccgttttgggggccgtctccgttttgggggccatatactgtatg
taCTTGTTACATgaaatttatttctgattgtttcgaatttattgacacta
ataaagtcctcagctgtaagttgtaaagtaAGTatcatgggaataaaatc
aagTGAACTTTTTCAAATAATCACATGTTTGGACTGCATTGGTATAATTT
TACAACCCGTGTATTCCCTCCTCTCTTCGACAATTAGACACTGTTTAAAA
AGCACTTGAGACTAATCACCCTACTCTTCCTCTCATTCTTTCAGATGACG
ATATCANTTGGAGAttgatcaaaataaaattttctcttcctttttctttc
agatGACGATATCATAATCATCGTAGTTGTCGTGTGTTCACTTACCTTGT
TCTTCCTACTCATCCTGGCTATCTTCTTACGATATCAACGCGATCGCGAC
GATGAAGTAGGCCAAGACATCGGTGGTGGCGCCGCATCATCGTACAGAAT
CAAGAATCCAAACGAATCGCCGAACCCAGGGATGTATAGAAAATCGGTCA
AGTATGACGATATCGATATAGGACATGGAGGACCATCTGCTGGCGGATCG
CGACAGGAACTTGGCGACATACCTGATTATTAAggagaaaataaataatt
taaatgaatttgatacaacaatttcttaggaaaatgtaTTAGAATTCAGA
TAGCTTAGAGATTGGGTTTATTTTGGTGAGCTATTTTCCTTCTCAATAAC
GCTAGTTTTAAGGATTCTTTTCTCGAAAGGGCTAATTTTTGCTCAAAAGA
GTTTTTTGTTCATAATTGAAGTACTGGAAACTTTCAAACCATAAAACCAT
AATAGCCATTTATTGGGGGAAGATGACAAAACTCGCAAACTCATTATTAT
TTTGTAATTTGTAGCCACTGTAGTTTATTTATTGTGTAGTTTACTGTAAA
TTTTAGTCTTGATTAAACCCGTCATCAAAGTCGCTTATCTTTAAGGACAA
TACCTTTCTTACATAGAATCTAGCGTTCAAGTTTAAAAAGTTCAGATGGA
CAAAGCACAACGGCTTTTGTAATAGAAACTTTTCGATCATTTATTCAAAA
CATGTTATGTTCATGGCTTGAGCTCTAATTTAGACGGGCTCGTTTAATAA
TTCGAATGGGAGGGGGTAAGACTAAAAGTCGTCTTATTAAGAGCTGAGAG
GCATTTCTTACCAATCCCTGAATGTGTTATCTCCATCTGTCACGTGGTCT
CTGTAAGAGTTCAAATATgatttttgtttgttattttctttttgcactga
aattaaaaaaaattattgttgtAAATTGTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00011938TCONS_00011938Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00011938-proteinTCONS_00011938-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:182723..190102 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.38	34.1	18.36	16.15	64.15	39.75	18.37	21.36	18.3	25.52	17.04	14.79	0.49	0.41	0.43	0.78	25.67	26.38	1.18	0.81	46.85	42.41	18.16	24.22	24.73	28.08	10.98	4.35	3.72	4.32