XLOC_005553 (gene) - C. hemisphaerica

Overview
NameXLOC_005553
Unique NameXLOC_005553
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000100:174907..182029+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005553 ID=XLOC_005553|Name=XLOC_005553|organism=Clytia hemisphaerica|type=gene|length=7123bp|location=Sequence derived from alignment at sc0000100:174907..182029+ (Clytia hemisphaerica)
GTCATTCCATACTTATCCAATTcagccaaaattcaaaatgggaAAGATAT CTTTGGTTTTCCTTGCTACCATCTTGGTGAATTGTTTTGGAAATATTGGA GGGTCTTCTTATGGCCTAAACGTCAGATACCTTCAACCTTGGGAGACAGA CAATGGTAAGGTCGATTTCTAATGTTTTCTTAAACAATTTATataagaca cccctgtgtcacagaccgtgggaccccagccccactggaaaatttggcaa aaatttcgtccctggtgAGAAAATACCTTGAAATTTCAGCCCTACTAGAA ATTTGAccttgatttcatccccattcgagatccaatattaaaaaatcaaa accatccccactggattttttaaccttggaacaataaaacttctatcccc attgagatttcgataGCACCGGTACTgtgtaacctgataacagatgttca taattttcttacgcgcacggtaaacctctaaaggcgcttgaaaattatac atctgaggaaaatagtcctcccgcggaaaattctacaacaagaatcttgt tgtgcgccggaaaaataaaaactgatacggcgccctattcataaataCAA TCTCGCAattttgttgtcattcctagtccttttagacgaacgcggtcctt acgatttcgagattgcatattcgtcagattgtttgttttcacacatccct ttagagcttcagcgtggtgtgcataaaacattcacaatctgatctcaggt tagtaCTGGGTGACAGGGGTGTTGTAAGTATTTTCTATATTACAAATCTG TTTTTCTTGCGCAGCGGCAGCGAATCTTAATTACATACCTATCTCTAAAA TAAAGTAGTAAAATCATATATGGGATAAAAATCTCTACCTAAGTGTCCGT GGGATAGAATTTCAGGTTATTTTTCTCATCGAGGATGGAAATAAAATTGG CCTTTGAATGATCTAAATCAGGTCAAATTAGTATCATCATACAGCACAgc tctgatgtgtcgcgagcacagagtacaatgtCTGTAAGTGCTATGagtac tttaagggcagaaactttcacgggcagaaactttcgcgtttttcgcgttt ttggcattttttcgcgaaagttaatttcgcgaaaagggatattttcctaa aaatcacgaaagttttttccaagttttaaaagccgAGGAGAGTCAATATT ATCGATATTATCGTAGTGACTAGGATTCGGAATGGGAGAAGtgcaaatag tttatttttcatttattagcatGTCACTCTTccgattgaagaaaaaaaat gaaatttgaaataattttttattcatcatgaatattgcccttatgtatta caatgaagtgaataaaGTCAATCTCATActgtcttctgaccagccaccag aaccgttggaggaccaacggatccggcgagactcgGACTCATAACCATGC CATTCGCGAGCAAttgctctaccattgagctacgggtccatgtgGAACCT GAGGACTTAATTGCCACTGGGTAGAGCTtgaagtgaattcttgtctactg actGGTCAGGGACGGTGAATTGGGAGAAATCCATCTCCACATTGCTAGTG TGTTAGAATGCACCAACTACTACACTAACGGAAGGTTTGGGCATGcatgg ttttccaacggttctggtggttGGTAAGAAGACAACATGGGAGCGACTGT ATTCAATTCATTCTAATTTTTCATTCACTTTCCCTAGCCACTCGCAAAAG TTATTGctactaaaattgaacattcacaaaaaaccgcgaaagtttcttcc gtaaattttattcaaaaagtaaaaatcgcgaaacttaaatccgcgaaatt tcgtGACTTTTCGGTCTCGTAAAAATTTCTGCCAaagaaagtttctgccc ttaacgTAGGGAACCATCCCGGGCTAGGGCCTAGTccgatgatatcggag ggtcAGCTTCTCTCCTTTTCTTAGTCTCGCTTAGTCGAAAGTTGGGTGGT ACATGCCTgtcagcttgcaaccctagtaccccttCCGGCGGGACGGATTT CGACCGGTGGATAGAGGGTGTGCACGGGTCTTTGACACTAGGATGTTTTA TTTATTCGATAATAGCTCGGTCAAGTTATCAATAATAATCTAACATTAAT AAGTTAAGATTACGAATTTGAAAGTATTACCTAATGTGTCCCCCTCCTCG GCTCGGGTTGTAACGTTAGGAAATGTATTTATAATAGATCCATTTTGTTT TTACACCACACATGACAACATACGGTAAGTCACGGTAAAatctaggctgc acgcatcccctctgatatgatttgatataggggatgcgtatcgtctaaaa tatttctgtcccaacttactcccgtcttttcttttttcttttttgattat gcgtcatagcaatgaatgaaaattgataattatgaaaacaacagcacaat gacttcatttctttctttctttgattgtgacgaaattatgtaaatttatg caaattttggttaccccataatctcggacgagaatttcatacacgatacg tatcccctaaaacaaaatagattctggggatgcgcgcagcctacATATGA CCACAcgataatattttttcaatagcTGTTGAATATGGATACGTCAATAT GGTCAAGCATGGATTCTATCTAGAAGTCACATCCAGTGaagttataaaat ttttcgAGACAAAACCAAATGTCGATCAATGTCTTGTTGAATGTGTTCAA ACAATGAATTGTACCAGTGTGAATTACAAACAACAGNAAACCAAATGTTG ATCAATGTCTTGTTGAATGTGTTCAAACAATGAATTGTACCAGTGTAAAT TACAAACAACAGTTGGGAGCATCAGTTCTGACAGAGTCATTAGAAGGACA ATGTTCTTTATTGAGAACTGATCGATTTCGCAATGCTGATAAGATTAGCA AGCAAACAAGTTTTGGATACGCTATTGCTGTTGCACATTTTTCACTACAA GTAAGTCTGCATTATTTACATATTGCAGAaactaattgttttttttcatg ataCCCGTCATCCacacattgagtttcaagcctgaaGAGCTGGAGGAGAA ACTTTAACCCtactcaggcaagagaaattgaagccacttatttccaatCC AAAACGCACATGCGCTGTAATCATGATGACAGATTGTATTtagcggtttc tttgttttggaggactacattttttgaaatctagcgatagattttagttt cagtctggcgtttgtgtaaaaactaagCGCGGGTGTTCTGGATAGGAAAT aggtggtttcatttcccatccaggagtgttgcctctagcccttcggactg gaaactagacgatgttatcgacCGTTTGgaggtcagtaaacgcgggaaag aattagggcgtcagggcggtttacgggacaaaagtggcggtagagatTTG GAACACTGTTAACATCTctgccactgcttactccacccgaatttatcaca cTTCCTAAACTATTCcgttttttagtgatcttgtgtagacgataggattg tctagcttgaaactcaatgggtacCAAGCCCTTTTGCTAACTATCTTAAT ATGTGTCTggtcaatattttctttttacatcAGACGGATACAAGAACACT TTATATAAGAATAATGATTAAAGATTAAGggtctaaaaagttaaaatagg TGTTTTCCACTAGTGACGGCTTCCTGGATTAATGTAACTTTTGATACGAA CTCGATGAATGGCCCAAACTATTTATACAATGTTTGTTAGCTTAAGCCAC TAGTGGAAAAACACCctactacaatcaaggtcataatatttgagaaaaaa gggaaattcaccggaaagttttgaaaacacaattgatttgtaagtgctct aaagtaggttggaaggatagagtttctgagttttaacgctagactgaAGA CTTAGaataggatctgaggatccaaaagttcaaaaatagtccaataaggc tcagaatataagCTGGAAGTCTTCCAACCCctctcaaattgaaatattcc attaaattaaagagatagcccaaaatcgacttcctcgctggaactttaaa tcttgaaaaaagttaaaataaccggaattctcaacatatttcaaccatga ttgtagtttgagtaaagaaaacggattgggctattccagaaaaaatttgt accccctatgttcaGGATGTCTTTTTCGGAAAAGGTGACACCCTGGattt tctttcaactttttaagaCCCttccttgatttttttctcaacatATAGTT CTGCAGTCCCACAGTCAGACTAGGATCTTAGATTATCAACCTTATTTTAC TGACCATGCTGGATTTTCggcctcattttactgaccaccctggatttttt taaacattttatacTGACCACACTAGATTTTACCCTCCTTTTATTAACga acctggatttttgacctcattttactgaccaccctggatttttaaactca aaaaaaccagaccaccctggattttctacctcattttactgaccaccctg gatttttacactcaaaaaaacgaaccaccctggacgtcacacctcctcaa cataggaggtacagactatttctggaatagcccattttaAGTTAAATTAT GGCAATTTCAGTGAAATAAACGTTCTTTATAACAATTCGTCGATTCTATA TTTCAGCACGAGTGTGAACTAGATGAACCATGTCCAACTGAAAATCATCT TTGTATTCCTGACTATCAAACTGGAGAATTTGAATGCATCTGTAAAAAAG GTTTCCATGGAGAATTTTGCACCAACAAAAGTAAGTCACAAACATGAGTC AACTCTCTAATGTTCACTTTTTTGTGTGATTCTGACACCCCCTTTCTCGC AGACCCGGTAGGAAAAAATCAGCCAGTGTCGGGTGAAAATAATAGACCAA AACTCGATGATTAAATTTatgattcaaaaaacatttcgacaaatattttt tagtataaccctttcattttattaaaaaacatcatcagtgcatatactcg atggggattgatattccaatattttttatggTGAGGATTTTATtgatctg attattttcaattgGGACAAAAGTTCGAGTATAGTTTGACactgggacga tattttggtaattttttccaatgggaagggtcccagtgggtctgtgagaa ggggatgcaTTCTTATAACATTCACGAAAATTTGTATCACACGTCCAACA GTAAAGTGAATAAaagatttcaataaaaaaacgacaaatttcacggtcca caaccccgacccgGTTAGTTTGTCCANNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNaaaaaaacgacaaatttcacggtccacaaccccgacccgGTT TGTTTGTCCACCACTCATCACAAAACGTGTAACACGTTTCTATCTAGCAA CTTGATgtctcccagctggcacataacgttgtttcaatgttaatataacg ttatatggacgtttttGAACgatagataaacgttgaaacaacgttgtgtg cctgctAGGCTTGTAAATTCGATGTTACCTTTCAGCGGCAATTGGAACAG AGAATTTAGCAAAGTACGGAGCAGCTTCACAATCCTACTTTACCGCAGGC TATTATGCTTCGAATGCTATAGATCAAAACCTGGATACTATTTTGCAGCT CTGGCATGATGGTTGTTGGTGGCAGGTTTCTCTACAACGCAAATATTTAC TTGGCCATTTTGTTTTCCATAACAGACAGGTTAGTTACCAGTCCCGTCGT TTAATTCTTCTTTTGTAGCATAcattaaaggccggtctccacttgcgcgc gctttgatcgcactttttcgagcaaagcttccacactatccatgatatgc aacactacaatgacttcacgaaattatgcaacttttccgtttttgttcca cccaatacgtcactttttctattgtttaagtgacgtattgggtggaaaat tttaaaagttctcagaagactctccagtggtgcatatcaNgtcacttttt ctattgtttaagtgacgtattgggtggaaaattttaaaagttttcagaag actctccagtggtgcgcaatggtgcatatcatggtcaaaataaaaatgaa acaactcCATTGGTACggtctgacgtaacggttgaaaaaagttgaaagtg ttcaacttttttttcgagcgcgcgctacatttctttattccaagcaaaaa ggattgaagccaaaaggtgaaATCGCAGcgtgcgcaagtggagaccggac TTAAATCTTTCAGGCTTCCTTGCAGTGTAAATATGTTAGATGGTGTAACA TATATATAGGTTCATGTTACCAATTccttattcaattcaattcaataaag gtatttcaaaagtaaacaaGAAAGCCTAGGTGGTGTCAAGGTCCAGCAGC GTCAGCATATTTTTCCGCTACAGAATCGCCATACAACAGGAgcgaatttt ttcaatgtatagaCTTGAGTCGGGCGAGCAATAAATTTCTACTaattaag aaagaaagatttgaccatATAAGTTGGAGGTACTAATTATATGgtttttt cttacgcatgcgcACAATAAAAATTAATAATTGCACGcataggccccgac aaagtcaaattttttcgaaaagttGTGTAGGCCAATTCCGCTGCGCGCTG GGCCAACTATGATCTACTTTATTACACGAAAATAATTAGACACATTTAAA GCCTTGAAATTAGCACGCAAAATATTAACAAATTTTACAAGGACACCACC CCGTAATAcataatttcacttttttttatcataGGATTGTTGTCTGAATA GAGCAAATGGTCTTCAAATTCATACCTTCAATGAGAACGacttagccaat cagattcatTGTTATACTTTACCTCACATGCATTCTGTTAAAATATATGA ATTCAATTGTACCTCATCTCGTATGGCTAACACTGTTAGAGTGACTACTC CTGATTTCATCAATTTTGCAGAGCTTGAAGTTTACGAGTTATGGGGTTAA ACCACTGAACTCaaactacttgactggatcgggctACCCGTAAACGtact tgactggatcgggctacccgtat
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00009906TCONS_00009906Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00009906-proteinTCONS_00009906-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100supercontigsc0000100:174907..182029 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.11 0.09 0.04 0.31 0.33 0.2 0.28 0.74 0.6 0.43 0.69 3.46 2.96 1.09 1.14 0.46 0.79 4.31 4.93 2.25 2.06 0.13 0.44 0.74 0.92 0 0 0 0.04