XLOC_005482 (gene) - C. hemisphaerica

Overview
NameXLOC_005482
Unique NameXLOC_005482
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000099:53393..63282+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005482 ID=XLOC_005482|Name=XLOC_005482|organism=Clytia hemisphaerica|type=gene|length=9890bp|location=Sequence derived from alignment at sc0000099:53393..63282+ (Clytia hemisphaerica)
CAATGTGATGATGCACATACACTTTTAGAGTAAGTAGGTTGGTCTATcag
atttgtttatttttaagaGACCTTTTGTCACATGACTCTTTGACTGATCC
CCCACTTACGTTAGAAACCAACGTACCATCTTTTGTTTCTGAATGTCctt
gttatttttgtttacttttccaTCTAACATCAATATACTTTTACCTCATG
TCAAATGTactattttttaaatcaattggGTCCattgtgttgttgttgtt
ttttgaattAGTATTCACGTTCTGAGGTCTATCAGCCAGTATAAGGAGTG
GGCTGGTAAGGGGTATGACAGTTTGAGATAAAGAataatctttttaattt
atagaTGTTCTTTTTTAAAGTTATATGGATTTTTTAGTTTCAAACCTCTC
AAAGGAATTCCTGGGTAAAGGCCAGAAATTTTTTCTTGGCCGAGACTGGC
AACAAAATAACTTTTGTTAGTGCACAGGATTATAACACAAAAGTTTCCAG
CCCTTTGCTTTGAgtgcaaattttgaaaaatagccCAGCTTAAGGTTTAT
TTTGTTGATCCATTTTGCAAAAAGTGCAGATTCATTTCAAATGAGTGGGC
AATTAGTGACTAAATGACCCGAGACACACAGTTACATTTCTATTTATTGT
ATATTTTAGGAGAAAAGAGATAAagtaaaaatcataaacaattCACTCAA
ATCACCATCTTCAATTACAACCATGAATCTAACAATTGCTTGGTGGACTG
GTAAACGCATAGGTGTATTGTTGGCTCGACCATCAGTCCTGTCCATGAAG
AATCAGTATGTCTGCAAGAGGAACCAGAGTACAATGTAAGCCATGTTCTT
TTTCAGAATATGTTTCAGGGTTCCCActggtcagggaaaacctggaaatt
gtactattttttgtaaaagtcagggcaaacctggaaaagtcagggaatAT
TTTATTANattaaattcccgccaaatttagttttttcgtccatccgccaa
attaaattccatctaaaaaactttttcggccatccgccaaattaaattct
cgccaaaatttcttcctttaaggtatgtcTTTCCAAGTCagggaaaagtc
agggaattCTGTTTTATAAATGCTTAAAATCAAAAGACTTCTATCAAATA
GTCtcttattttccaaaattttctgtGTCGGACCCTGCTTTCGTCAGGGA
GAAATACCACTTTTTTTAgtaaaaagtcagggaaaataatgtttttcaca
ttggattgacacagatgtggagcaaggttggtcaaaaagaggaaaaggaa
aaaatatttttgcttattatatcagcataatataataataggcagacact
gtcctgatgtgatatgaaatatgtgtctaatatgaaacgggaacacttat
gtaaagaTATAAACCTTTAAGTGTANcaaaaagaggaaaaggaaaaaata
tttttgcttattatatcagcataatataataataggcagacactgtcctg
atgtgatatgaaatatgtgtctaatatgaaacgggaacacttatgtaaag
aTATAAACCTTTAAGTGTAATAAGTTTGTAACAATTATTGTTTCAGGTTA
GCTGAAGTTGGCAGATTTGAAACTCCAAAAGTCCAAGGAAAATATGAAGC
AGGCCAGGTAATTATTCTNGTAACAATTATTGTTTCAGGTTAGCTGAAGT
TGGCAGATTTGAAACTCCAAAAGTCCAAGGAAAATATGAAGCAGGCCAGG
TAATTATTCTAAATTGACAGACTTGGTTAGCACTGGTGAAGGAAGTCTAA
AATCCGAATCTGAGaaaattcaacaaaagaaatactGCAAAATACTATTT
GAAACAGTTTGAAAATGTTCACATCCAAAAGATAGAATtgttatacatgt
tttttttataagcaagtgtctgccccttggtctggctcgtgtatgctttt
aagttctcaaagcatccaggcatagtttatgcttattataagCAATGGAA
TGtcgctagccgtggaatgtctattttttacttgacctctaccaaacctt
tttaagcAGATAAAAAATggtaacttgaaaaatatttcaggctgacatat
GTATGGGAAtcctgcaaatctgagccttcatatgcttataagcgttatgc
ttatNAGGCTGACATATGTATGGGAAtcctgcaaatctgagccttcatat
gcttataaaaaaacacgtatTTTGCATATctacaaaataatgaaaatgga
aGGATTATGATTAACTAATGCACAATAAAGTGCTAATAGGGGTTCTTTAT
ACAAACACAGTACAATTTTTCATTCTCCTATTTTTTCATTCCACCTACAG
TTGTTCCTACATCGTGTGTTTGGGTATAGAGGTGTCATCTTGTACCCATG
GATCGCCAAATTCTATGATCTTGATTCCATTACCGATGGCAAAGACAAAC
CGTAAGTAGTTTCAAACTTATTGGATAGAAAAGCTATGGATCGATGTGTC
TACGTTCTGAAATCTTCAACTTATTTTGGCTTGGATCGCGAGTTTTACAT
CTGGCTACATGTTGGAGAGATCATTTCACCTATACAATGGAGATATTATT
TCACTTAATCAAACACAATGGAGAATATTTTCTTCATAATTTCTTCCGAG
ACCTTTTTTTGATTCTGATCAACCATAATTATCAAACGTAAAATGTAGGA
AAGTTTCGGACAAGAAATTTGTTTCAGCCTCATTAAGATAAGTCACAAGG
CAAATCTCCATAATGTTATTTTTGGTAGGATTCTTGAAGAAACaccacaa
aatgaaaaaaagaatacTAAAGAAACTGCAATGAAGCCGTCATCTTCTAC
TTATTACCAAGTTCTCATTGATGAACGAGATTATCCGCACATTGTAAGTT
TCTCTATTCATTTATTGTATATATTTGTATACCGGGTGCGTCTAAAAATC
GCCCCTATTTTACAATCTTTACATTTTTCTATTCAGTTGAGctgcttgaa
tttttttgtgagttgtacattttattttcaaacatttctcGAAGTATATC
TGAATATTTGTTGTTGGTACATTTATATAGTGTACTCTCTAACTAACGAA
AGAACATTGGGGTTCctttagattttcaaccttATCAGTTAAAGCCAGAT
TTTTTGTAATAATTGCCagatttttcagattgtttGCTGTTTGGTTTTCC
GGACTAAAAAATGTAGCCCCTGACTTTCTCcgatgtccgctaattagaga
gCTTGTTTAAAATTTATCCCAATGATTTTTTAAGCTTCATTCACTCACTG
CATGACAATATAAACATAAGTATGCACAAAGTAGACTACCTCTTTGGTGA
GTAGGAGGGTTCTACAAGCACGACaccaatttcatatttttgcaGTGGAC
GACCTTCCCATCTTACAATTTCCGTTTTTATCATCCGCAGAGGGCACAAT
CGGAGGCTGTTACATTTTTGGGCAACCCAGAGGATACCACACTGTATGCT
GTACCCGGTAAAGGCTCGTTAATTTATTAAGGGTTTCTAAATTTGAtgaa
tttgaattgaatttaaGATTTTTATGGATCCatcttttcaattaaaagat
tttctataaCAACCTTATCctttgttggacctacctggaggtcctataaa
ttaacctttgtccgttcgtctgtccgTCTGTTCGTCTGTTACCAGCTTTT
CTCGAGATTGGCTCATTATTTTTTTCTGATTTTTGGAACAAAGCTGCAAA
ATAGTAATGTCCAAAATGTGACGGAGCCACATTTTTTCCGGCCGAAAATA
CCAGAAACATTTTTTTTGGCATTCTCTCGAGATTTTATCATTAGTTTTTC
CGATTTTTTGCACAAAGATATGACCGAGTCCTAATTTTGAGAAAAATTAT
TTTCCAAAAATGTTGGAAATATACTGGAAATTGCCGTTTTTGTAGATTTT
CATTGGACTTTTTCTAATAATCGTCAATACTGATTTTTGCAACCGGAACT
TTCGATTTCTTTTTTCCCTACTCCCCTTCCCTCTCCCCCCATCAACAATC
AATGGTGAAATTTGATGCGTTATGCATTTTGGCTAAGCGCTATATTTTCT
GACTGATTGTTGAATTTTTCTCCTCATTGCTATCTAACTTTCATCGTCAG
CTAGGTCCAATCAGCATCTAGCCTGTTTTGAACAAAACAAAAAAAAGTAG
CAGTCGAGTAGTCGCTCGATGACAAAAGATTTACACAAAGATATAAATTG
AATTTATATTCAATTATATAGCCAGGTTTTTTATTCTTTAACGACTGGTG
CTATTAATAAAAGAGTGAAATCCAATGATCTGGTGTTGTCTTTTTTTAGG
TTTGGATTATGTGAATCACACGGATATTTTACCGTACATATCAAGTTCTG
AGCAACCTATCGAACATGATCTGTTCAAGAAATTCCTTCTCCCTAACCAA
GACCAAGGTAAAGTAACTCATATTAATATTATTCAGACATTCACCAAATG
TTCATAATAACTCGGTGTCTGACAGTAGCTTGGTGGGTCGACCAAAATTG
gggcaaactggggaggcaattttaaaagattttgattttcgtgCCCCCTA
TTAAAAGTAaacatctttgaaaaaataacgcgAGCGAAACGATCACGaaa
ttttttgggtatttctGTCCTTTTGATCGAAAACTACCAATTCTAAGAGG
TAAAAAAGCAAGGGGGTGCcaaaattagtaatcagaggcATATTTTTGCG
CCCTTTTTATTTCGTCGCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNccccccccccccccaaaaaaaaaaatcggccGATCGGGT
GGCACTGCTTCCTgtcccctgccaccacgctactggtgTCTGCTTCGGTT
ACCTCCATATCTTGAGCATCACCACATCTCTCGTAAACTTTTCTGGAATT
ATTTATCAATTATTCAATATTCTTCGTTCTACAGTACCGGCTTTCACTGC
AAGCCCATCATTGCGCACATGGCATCAAAAGAACCACAAGTGGCTTGAAT
TGTCCGAAGTGATCCGTGAAACTACGGACAACATCCGTGTCACTGCTATT
CCTTTTTACATGGGCTCCAGGGTAGGTGCTTTTATACAACATATCATAAA
CGTCAAAAGctgaagaaaaacagaaaatccaaaaaagccATTTCCTTGAG
CATTAACGTAATTTCGAAAATGCTTTTTACAATAGTAGGGTACTAAGGGT
TCAGTCAGTAAGGCCTTCTAACCGAGGGTTTTTTAATTACcttcagtatt
ttcgtttctttTTAGATGGTTCACGGCGCCAAAAGCTACTGGGTAAGAAG
AATCTAGTGAAATTTGTTCTATATAATCTCTTTTAACGGGATCCGTTGAA
TTGTATCCACCCGTCGGACGGGATGTCGGACGGATAAAATGCATTGAATT
TTGTATCAGTGCATATAAGAATTCCGTAGGGAATTTCCCTTCTGTCCACT
ATTCTCTAAGtttgaaccacaagtgattttgtgGTTTAGAGATGCTGAGG
TATGCAgagctgacgagtcctaataaggacgaaatgcatatgctgttctg
ccacccaaatctcctgaaagaaggtagttggacagaaattcttatttctt
cacatatataatTGGTTTATAATTTATCGTTGTTTATGATTGGCATGATT
AGCAAGATCAGTTTTTTATTGCAACCAAAGAGGAAAAAAGGGTAAAATTC
ACCGAGATACCAATAACATGTATCCATAAATGATTGATagctttttcctt
tcttttttcagtGGCGATATTCCATCCGCTTAGAGAACATGGGTATGGAG
TCTGTACAATTGAAAGAAAGACATTGGCGAATCTTTTGTCTGTCTGGCGT
ATTGGATTCAGTGAAGGGGCGTGGAGTGGTGGGACAAGAACCTGTTCTCT
CAACTCGGCAACCGGCATTTCAGTATAGTAGTCACGTGACGTTACCCTCA
CCAAGTGGACACATGTGGTAAGATACTAATACCCTTTTTTATGAAGCCCC
ATAATAACATCGCATTGAATTTTTTCCAACGTTATTAAAGTTTAAAAGGt
caaaagtaagaaaatatacaatttaggacttgcttttttgattttgatac
cTGGATTATTTTGATAACAGGGATGTTCAATGTCATCTTGATCTTCTCTA
AGTATATTATATTCCgtataaaaaacactggtctagaagcttattgtttt
aactttttgttagcttttcccTTGGTTGTTTGGTTATTAgacaaaagatg
aaaatcgatttgctcagtttttgatcacgttaccaagtactcctcttggg
attgttTTAAGATtaaatcacatgatcaaaaagtgagcataacaaactaa
tttctcaacacaagttcaagtaagaaacaatggaaagaaaaaagGCTTTC
GGACCGGGTGTTCTTATACGGACTACGGAGTATATAACAGCGTATCTTAC
TGTCTACCCTAACCCCTTTCTTGTGCgatctactttaatgggataaactt
tcgcggggattaaatttcgcggttgggcctatccacgaaattcaaatatt
ttgcgNTTGTGCAAGTAACCATTtatatagtatttatttgacatattttt
gtttagaaatactTCGGGGacgaggcccttccaaattcccatggggactt
aatttcgcggattttcgcggatgacacccaaatccgcgaaatccgcgaaa
tttaatccccgcgaaagtttatcccattaaagtataagAATGATTGTAAC
ATATCCATGCTGTGGGGCCATGCTTATCGAATAATCCATTATTTATTCAT
AGGGGTACGTATCGTTTGGAGCGTCCTGACGGACGAGTGTTCGACGTCCG
TATTCCGTCATTCCCGTTGGAAAGTAAAGAAGACGATCCAATAACTACGT
GATCGGAACGATTCCTTTCGTCAGCCTTAGTGGTGGTTTAGAGGAGTAGA
TGCATTCGGGGAAAGAACGAAGTGTGTGTAAAACCTCTACTCGTTGAGAT
AGTCCCGAGAAATTATCCTTTACGCGATTCTAACCAAGCGTCGATGAAAG
tagaatagaccttatcggagttttatattttttcgaaaaaaagcgATGTA
ttatgggattgtttcgggggtattgcAATAGAAATgtcttttagaaaaaa
tcaatcatcttttttagaaaaatcaaaaactccgataagatctattagaa
agtttaaaacgcttagttttttcaaaaactatcggTAATATTATTTTGGT
GGTGGAAGTGTGACAGTTAAACAATATGATTTATTGTCGAATAGCTTAGa
gttgctattgtttttgtaCGGTGGAAATGGACGTGTTGAATAATGAACTA
AGCTTACATAAACGGACACTTCAATCGAATTAATTTCGGCGATCTCGAGG
TACCTAAGGCACTCcacataaaaaaaacatttacgttATCACGTTGCGAC
CGTGCAAGAGGTTCCGCCCCTTAACGTAaacgttttttagtttttttttc
aaagcattttgaTATAGACAATGGGATGGGGCATGGTCAGATGCACTtac
tgaaaaatataaaaattttgagaaaaacctaattttttagccaattttca
tgattttgatgacgtcacagaaataagaatttgaataaCTTCTAGTAGGA
GAAAGCTTTTgccctcaaaaaaaattcaagattttttgcttaCGTCAGCA
TATTTCAgcaaaaacggtttttttgaaagttttgctgacgtcagtaaatt
tttttttcgtagaTCGCTTCCTTTCGTCGATTTACACcgttggtgaaaat
ttgaagtcaaaagTCATACTTAAAGTTATTCAAGATTTTCTTTCTATGAC
ATCATCGAAATGgagaaaaatgaagttttctcgaaatttttcaattatgg
AGCAAGTGGGACCATCTGACCATGCCCCATCTCATTTTTTTTATCGAAAC
ACTTCGAAAAACCTAAAAACATTTACGTTAATGCGTGGTGCCTCATGCGG
CCATTGGGGAGTGCCTTAAGTACCCCGAGGAGATttaatttcgaattttt
ttgaatatatgccattttcgcgaaaataagctATGGCTGACTCGACTCGA
GGAATCAGATTTTTGCGTAAAGTACActgaaaattcaatattttgggCGT
TTTCAAGGCCTTTTTtagcctggttaaccaagccagtttttacaagGCTA
AGATACGGCTAGGCCTTTTTAAACTAATGCAAGTTTTTTGGTACCAATTC
TGATATACAGTAGAGCTTTCGTAGTGCTTATTACACTCGTTCTAATTAAA
GGTAAGTCATTTCTAGGTTATATGGTCtgtaccattgagtttaaagcccg
aagggctagagtagaatctctaaactttcccaggcaagaaaagtgaagcc
acttatttcccatccagaacgcgccgcaatcatgacgacggattgtgaCG
ACGGTTCCTTTGTTCTTTGTTCCTTGATTTTTTATCTAGCCATAGATTTT
AGTtgcaatccggcgtttgtgtaaggGAAATaaatggtttcatttcccat
taatttgtaaattttgcgtTGGTATATAACAAATTTTTCatgtacagtat
gtggcccccaaaacggcgatcaaatttaaaatttctctcaaatctagagg
aaaaaaggttttacaaagatttttgctgcatgaaaaactt
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00009791TCONS_00009791Clytia hemisphaericatranscript
TCONS_00009792TCONS_00009792Clytia hemisphaericatranscript
TCONS_00009793TCONS_00009793Clytia hemisphaericatranscript
TCONS_00009794TCONS_00009794Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00009792-proteinTCONS_00009792-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:53393..63282 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
POLDIP2polymerase delta-interacting protein 2 isoform 1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.14	4.58	4.04	4.52	22.67	15.58	18.66	19.5	13.58	15.73	13.59	10.73	11.31	15.08	10.72	10.05	10.04	10.49	7.57	7.85	11.64	12.29	9.64	11.89	17.62	18.94	6.77	6.58	4.11	4.12