XLOC_005048 (gene) - C. hemisphaerica

Overview
NameXLOC_005048
Unique NameXLOC_005048
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000089:296167..305210-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005048 ID=XLOC_005048|Name=XLOC_005048|organism=Clytia hemisphaerica|type=gene|length=9044bp|location=Sequence derived from alignment at sc0000089:296167..305210- (Clytia hemisphaerica)
CTCACAAAGAAATTTGTAATGAAGTAACTTTTAAATGAAGCAAATGTATT
ATAATCAAATTTATTAAAATAAGTCTAGGAACTAAAAAGAAACTAAATAT
TAAGAAAAAGGAAAACTTTTACTTGTCACTTTTGACCAGTGTCCATCCTT
CTTTGGTGCACTTATGTAGCTGTTCTGAATTACCAACAAGCCTTGAAGAA
CTCCGTGAATACAATGCCAAAATTTCTGTTTTAGAAGAATCAAACTCAAG
CCAATATGTGAATCCACCATACATTCCAGGCATATTGAAGTAAACTTCTT
TATCCTTTGAAACGTCTTCTAAAAGGACTGACAGGATTGGTAAAATCACA
TTATACTTCTGAACCAATGAAGCAACTCTTTCCAGAATGACTTCATGAAA
ATTTGCCTGCAACAATTTCATCTCCAAGTGAAGGAAATTCATCTTGTAAG
ATGGTGAAAACAAAGCTTTGATATTTTTTGGCGTGCCTGAATCCAAATGA
TCAATTGGTAACTTTCCTTCTCCGTCTGGTAATGAAAGAGGATATTGATC
GATAGCCATCTTCTGGACAATTGGTAAAGGTGCTTTGAAATAAGCGGCAT
GATGGACGATGGTCCAGCGCCTACTTGGATAAACTCTTTGATCATTTTTT
ATGTCTTCATTCCAAATGTAGTGTTTTCTGTATTTCTTTAGACCATAAAG
ACATTCATTCCATTGTTCTGTTGTAGCTTTTTCATTCAAATTGGGTATAT
ATTATATTTTCGATCAAATGTGTGACTTCATTTGGAAATTGAAGGAACCC
AATCCAAGACATTTTGGATCTAGATGAGAAATAATCAGCTTCAGAATTGT
TATTTCATGTTATCTGGTATGCTTGTATGTGGTGTAATGGATTTGTGACT
GTACCTTGATGATAGCATGCTGATAGGATGCAAGATATGAACACTGGAGG
TGACATTGAACATTTTGAATGTTGACCTGATAATGAATTATTCTGGAATG
AGTTGTCATGAATATCTCAGCTTGTCAATAATTCCATAGCCTTTGGCTTG
TGATGTTGTCATTTAAAGTGGAACAAGTAATTGATTACAGGATGTTGTTT
TGAGGNTCTTGTGATGTTGTCTTTTAAAGTGGAACAAGTAATTGATTACA
GGATGTAGTTTTGAGGAACAGTTATTACAATGTTGATGTATGTTAATCAT
CCCTTGTATGCTTCATTTTTACCAAAAAGATCTCTTTGGTTGTCAAAGTC
TGGTAGGTAGATTTAACTCCTTTAAAACACCACAACAAAGTTTCCTTGGG
AAATACAAGTGATTGATTTTCCTCAGAAAATACAAGTGAATACAAGTGAA
AGTTACCTTGGAAAGAACAAGAGAAGCATTTTCCTTTGGGAATACAAGGG
AATCATTTTCCTAGGATAATACAATTGTATCATTTTCCTTGGAAAATACA
AATTTTCTTTTCCTTGGAAAATACAAACAAACACCATTCACAATTGAAGT
CTGAAAAATTCTCATCACAATGATACCAAATTATTTCTAAAAACTTTGAT
AGAAATTCATCAAAGACAGATTTGATTTCTTATTTTCGTGCACTTTGTTA
GCTTTTAATATAATTATGCAGTCATGATGCTGTTATAGGGGCTATTTGAA
AATTGGTCATCATTTAGGTCAATAATAAAAAGTTTACAAAAACACCCGTT
AATATTTGATTTAGTTTTAATTAGGCTTATGCTATGGGAAAATGACATTT
AATACCAAGGCAGGTCCTAATTTTTCTTAGATTTTGCACCATTTGTACAC
CTCTCTGGAAAAATTTAGTGTCGGAAGGAAATTTTCATTATAGCCCTTGT
ATCATTAGAATTGCTAGAAAATTCTGAGCAAGAAAATATAGGTATCTTTT
GATATAAAAGAGGTCTCCCCAAAATATAAGCCCCTAAAGTTTATGCATAA
TTCGACCTAAAACATAAGAATTTCGTCATACCACGCTAATTATACAACTT
TTTTAAAGCAACAACAAAAGAAATCCATTACATGTTTTTTTTTTATAAGG
CAAATACTTTTTTATTTATTGGTTTATGGATCCGCCGACGTTATTTTTGC
CAAAATAAAAAAATAATAAAATAGAGATTTCAAAAACTTTTATTTACTTT
TTCTCCTCCGACCTTCAAAAAAGAAGAAATAAATAAAAAACCTATACTTA
AAACAGGAAAACAAAAGAAAAGAAGAGAATGAGAGAGAGGGAGTTAAATG
ATCTAACACAGCTGTGCCCTATTCTGCCAATGTAAAGATACTTTGATCCT
TCCCTTAATGTCAGGGAACTTCCCTATGGAATTTCCCTATCCACAAAAAA
ACAAACTTTTCTTCATTTTTTTTCTTTCTTTTGTAATCGCTTTTATTTAA
AGTTCTTTATGTGATCAGGGGGGGTCAAGCCTCAGGGTACTAAAGCATAG
CCGGTGGGGTGGGTGTTTTTCCAAAAAAAATTTGATAAGTACCCGGGTAC
TTTTTGGGTGGGTGGGGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
GTTTAATTTTGATGAGTGTAGAATTGAGAAAGATTAATAAGTAATAAATT
TATTTTTTGTAGGTATAGGGTCTAAGAAGGAAAAGTCCTTAAGTACCCGG
GTACTTATTTGGGTGGGTGGTATGAGTCAAAAACTTTTTTAGATAAGTAC
CCTCTCTAGGCTATGCTTTAGTACCCTGAGGCTTGACCCCCCCTGATGTG
ATTGTTAAAATTCAAGAGTAGATATAAAAATAGGCATACCAGAAAAATGG
GATGGGGGAACCTAAGTGGGAACCCTAAAGTGGGAACCCTAGGGGTGAAC
CCTAAATGGGAACCTTTGTCAGTTTAACATATACACATATCAGTCTTTAT
GTGTACATTTTTATGGTTCAGTTTATTTTTAGTGTTTTTTATCCATAGAC
TCTATCTATAACAACATTTTGCACTTTTCTTGCATCTATTCTTTTGTCTT
TAAATCTAAAAAATCTATACTTTAGGAAATTTCATGAAATTTTATTTTAT
TCTTTCCTCCGATTTCAGATTTTTAAAAAGGAAATAAAAAAAATTTTAAA
CATCAATTTTATTTTTATTTTTTTTCCATCCTCCTGTCCAAAACTTTTCC
TTATAATGTCCGTAAACCAGAAAATAAAAAAGTAATTGCCTAACCATACA
AAAATCCGAAAACAGGCTCAGAGATGCTTAGGTCGAAAGCTTAATAAAGC
TGAAAAATGCTTAAGGGATGCTTAAATCCAAAGCATAAATTTAGGGAAAT
ACTGAAAATCCGTAAAATTCCAGCCAAAAAAAGCCAAAATGGGCTCTTCC
AGAAAAAATCCGTTCATGGGGGGTGGAGGATATATTATTTTCTTCATGAA
TTACCCCTGGACATTTTGATTTTTAACCCCCTGAACATGGGTTATACCCC
TGGACAAACATCAAATCAATCCCGTGGACACAAAAAATTACCCCTGGACA
TTGGAATTCACCCCCTGGACATTGCAATTTTTTGGTATTTTTTCAATACC
CCTGGACAATTCATCCTCCACCCCCCATGAACGGATTTTTTCTGGAAGGG
CCCAATCAGGAAAAAAACATTTTTCGTAGGCCCAATTAATGCTTGCGATA
TGCTTAATTTTTCCCCATATCTGAGCCTAGATATGCTTATAAGTGCAATG
CTTATAAAAAAAACATGTAGCTCGAAACAAACTCCCTTAAGGGCAAAGGA
CCTGGTATATGACAAGCCGTTTGTCTATTGTTCTGAAGAAGCTGTTTTTC
CATCTCTTTACATTAAACTGGTTGGCTGCAAAATATTTTCATTTTAGATT
TTTAGATTTTTTTTTACAGTCTTGATTTTTCTTTTTAAGCATCAGAAATA
CAAAACTTGTATGTGTTTTGCTAGGTTTGTTAATTTTCTTTGTAGGAATA
GATTGTTTTTTAGTTTCAAGAAATTAAAATAATACAGCGTAAACTATATA
CTATCAAAATTTAATCCCCGCGAAAGTATTAGTTTCAAAATTAAAACATT
TCAAATAATGGTATGAGTGGGACTTGTCAGAAAAACTCAATCACAAACCC
AATGAAAGTAAAAAATCAGCTGATAATCGGTGACAGCAGCAGTTTTTCAT
TAATGAATGTATAAATATTGTGCTAATTTATTTATGGTAAATTAAATAGC
TGAGAAAAAAATTTGCCTTCCTCAAAATTTTTTATTAATTTGTTGAATAG
TGAAAAAATATGTGGCTATTATACTTCCATTTTTCCCGACATGTATCGGA
TTTTTGATTAATTTGAATACTTAACTACTCGAGAGAATAATCTAAAGGCA
CAAAAAATTCCTGTAGAATATTAAACTTCAACATTATGCAAAATCTGATT
CAATTAATTCTGACTGCTCTGGTGTACATTTGTGTGTTTGACCAGAGCCA
CCTGCTATCCAACAATAACTGCTTGTTAAGAGATGATTAACATCACTCTT
ATCTGCATTCAACTGAAATTCAATTGTGAAACCACCATACATCCCAGGGA
TAGCACAATATCCATTGTCGAGAAATTCTATAGCTACTTGAACTTCTAGG
GAAACAGATAACTGTGGGAGAATTAAGTCATACTTGTCAACCAAATCTTT
GACTCTTCCATTAATCACAGCATGGAAATTTTCTTCAATCTTTTGCAGAT
TCTCCAAATTTAAGTTTGAAAGGCCATACCTAGGCATGAACAATGCCTTA
TAATTGCAATCAACATTTACATCAAGATGATCAGCTGGAGTCTTGCCCTC
ACCATCTTTGATAGACATTGGAATGTGCTTTTCAACCATGAATTCGATTA
TTTCAATAGGAGCATTAAAGTGAGCTGCATGATGTTGGATGGTCCACATT
TTGCTTGGGAAGGGAGACTTTTCATTTGTTCCATAATTGCAAAGATAACG
CTTGAAAAGGTCCTTGTGCACCATTTCTTTAACAACATCTTTCCAATCGT
CTTCACTAGATTCTTTTGTCAAACTAACAACCTGCTCAATTATTTCCTTT
TCAGGTTTAATTAAGGCTTCCCATTTAGCCATTTTGAGTATTTTAATATT
ATAGTGGGTAATTCTTTGGAAGAAATATTTAAGAAATTAGATGCATACAG
GATGTTCCAAAGTGTCAGGGTGTGTCCCAAGTGTCAGACCACTTCAATAA
ATAAAATAGAAGTATATTTTGTATTTTTTTTTTTCAATGCGATAATTAAA
ACTTTTGATTGACTTAAAGTAATTTCAAAGCTTTAGACACCAAAAATGAA
ATTACGAAAAATCACAATTTTGTTAGAAAAATCACATCTTTAATTTCTTT
ACATTTCAAAAAGGTAAATGATAAAATAAATTTCGGTAAATAATTAAGCA
TAAAAGAAAAGAAAATGTTACTAATAATTATTTGCAATAAATAAATTTGT
TTTAAATAAATTTATGTCTAAATAGGGTTTAAATTAGGTTTGAATAAATA
AAGGTCCAAAACCTTGAGAGTGGAAATTCAAAATCTGATTACTTTTCAGG
TCAGCCTTTGGACCATCAAAAATCTGATTTGGACAGATTACAAAACGCTT
TTACTAAACAATGACATCGACAACCAATTTCTTTAAAGATTCTTAAGAGT
TGATAGAGCCAGTCTTAATCTCAACAGGTCATTTACTATTGTCCCTTAAA
AGACTGCCCCAAAACTGGTTAAATTTTCAGGTATTTCAAATTGCTTGGAG
AGTCAATCATTAAAAATTAGGCATAAAATAAGAGTTTGTATTTGTTTGTA
GATAAATTTAAACTTTAACACAATAAGATAATGACTTTTAAAAGATTTCT
CACAGGGAAAGTTATAATGAAGAAATTTTTAAATGAAGCAGATGTATAAT
TAAACTTAAAAACAAAGCTATAAAACTAAAGAGAAAATAAATCTTAAGAT
TAAGGAAACCATTACTTGTCACTTTTGACCAGTGTCCATCCTTCTTTGGT
GCACTTATGTAACTGTTCTGAATTACCAACAAGCCTTGAAGAACTCCGTG
AATACAATGCCAAAATTTCTGTTTTAGAAGAATCAAACTCAAGCCAATAT
GTGAATCCACCATACATTCCAGGCATATTGAAGTAAACTTCTTTATCCTT
TGAAACGTCTTCTAAAAGGACTGACAGGATTGGTAAAATCACATTATACT
TCTGAACCAATGAAGCAACTCTTTCCAGAATGACTTCATGAAAATTTGCC
TGCAACAATTTCATCTCCAAGTGAAGGAAATTCATCTTGTAAGATGGTGA
AAACAAAGCTTTGATATTTTTTGGCGTGCCTGAATCCAAATGATCAATTG
GTAACTTTCCTTCTCCGTCTGGTAATGAAAGAGGATATTGATCGATAGCC
ATCTTCTGGACAATTGGTAAAGGTGCTTTGAAATAAGCGGCATGATGGAC
GATGGTCCAGCGCCTACTTGGATAAACTCTTTGATCATTTTTTATGTCTT
CATTCCAAATGTAGTGTTTTCTGTATTTCTTTAGACCATAGAGACATTCA
TTCCATTGTTCTGCTGTAGCTTTTTCATTCAAATTGGGTATTACATTTTC
GATCAAATGTGTGACTTCATTTGGAAATTGAAGGAACCCAACCCAAGACA
TTTTGGATCTAGATGAGAAATAATCAGCTTCAGAATTGTTATTGCATGTT
ATCTGGTATGCTTGTATGTGGTGTAATGGATTTGTGACTGTACCTTGATG
ATAGCATGCTGATAGGATGCAAGATATGAACACTGGAGGTGACATTGAAC
ATTTTGAATGTTGACCTGATAATGAATTATTCTGGAATGAGTTGTCATGA
ATATCTCAGCTTGTCAATAATTCCATAGCCTTTGGCTTGTGATGNAAGAC
ATTCATTCCATTGTTCTGTTGTAGCCTTTTCATTCAAATTGGGTATTATA
TTTTCGATCAAATGTGTGACTTCATTTGGAAATTGAAGGAACCCAATCCA
AGACATTTTGGATCTAGATGAGAAATAATCAGCTTCAGAATTGTTATTTC
ATGTTATCTGGTATGCTTGTATGTGGTGTAATGGATTTGTGACTGTACCT
TGATGATAGCATGCTGATAGGATGCAAGATATGAACACTGGAGGTGACAT
TGAACATTTTGAATGTTGACCTGATAATGAATTATTCTGGAATGAGTTGT
CATGAATATCTCAGCTTGTCAATAATTCCATAGCCTTTGGCTTGTGATGT
TGTCATTTAAAGTGGAACAAGTAATTGATTACAGGATGTTGTTTTGAGGA
ACAGTTATTACAATGTTGATGTATGTCAATCATCCCTTGTATGCATCATT
TTTACCAAANGTTGTGATGTTGTCTTTTAAAGTGGAACAAGTAATTGATT
ACAGGATGTTGTTTCGAGGAACAGCTATTACAATGTTGATGTATGTTAAT
CATCCCTTGTATGCATCATTTTTACCAAAAAGATCTCTTTGGTTGTCAAA
GTCTGGTAGGTAGATTTAAGGAGATAACTCCTTTAAAAAATCACATTAAT
GTTTCCTTGGGAAATACAAGTGATTGATTTTCCTCAGAAAATACAAGTGA
ATTAGTTACCTCTAAAAGAACAAGAGAAAGGGGGGGGGGTCGGTACTAAA
ATTTCAGACATCATGACTTTTAGTGACGTGGTGGTATTACAAAAAAAGCC
TAAAAGTATTTTAGTACCATGTATACTAAAATCCCAAATTAGGTGGGGTC
TTCAAGAAATTTAAGAAAAATTTTAGTACATGAGTACTAAAAAAAACCAC
CTAATTTTAGGAAATTTAACTACTGTCGAACGTGCTAACCGCACTGGCTC
AACTTCAGTATCTTTGAAATCATTCGTAGGCCCAATTGTAAACTTAATGG
CTTAAGAAAAATTATAGCATTTTGGGTTTTAGCTTCGTTTTGGCGAAAAA
CTCGTCTACAGGCCCCAAAAATTAAAATTTTGAAAAAAATGAAAAAAAGG
CCCCCAGGGATTTGCCCAAGGATCAAGTGTGCAAAATTTCAGCCAAATCG
GACCATTTTTGAAGTCTCCAGCCTGCCCCAAAGTTTTAGCCTCG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00009029TCONS_00009029Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:296167..305210 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.08	2.12	3.13	2.98	2.14	1.71	2.02	2.02	1.12	1.6	2.97	1.31	3.02	3.1	0.98	1.14	1.43	1.57	3.3	3.26	2.6	3.05	2.59	2.82	1.42	3.49	2.13	1.7	1.34	1.38