XLOC_003953 (gene) - C. hemisphaerica

Overview
NameXLOC_003953
Unique NameXLOC_003953
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000073:323325..333153-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003953 ID=XLOC_003953|Name=XLOC_003953|organism=Clytia hemisphaerica|type=gene|length=9829bp|location=Sequence derived from alignment at sc0000073:323325..333153- (Clytia hemisphaerica)
AAAAACCGACCTCTCTGGTTTTTACGCAGTCAACCATAACCGAGTATTGC
TCTAACAAAGAATATACAAATAGAACTATTTGGAACTTCGTTCATTGGTA
GGCAACAGGTAAGTCAGCCTTAATTTTACGATTTTAAAGTTCTGTAATTA
TTGCTATACAAACCTAAAATTTCTGAAGTCAACTCAGTATACCTACACCC
TTATTTTGTGACCCTATAATTTTATATCTGCATGGGATAGACGAAGGACC
TAATAAATTCCGCCAACAGTGGGAATGGAAATGTCTTGTGTTTGGTGGCT
GGTGGTTTTGAATCTCATAGTCCGCCAGTTGCGGGAAAAAGCTTTTATTC
GTTATTCCAGGAGATGAAATCTAAGTATGTTTTTCAATCGAAAATTTAAG
GGTATTTCTTGTACAGGCTGACTTTTTCAGTGGGTAAGAGATCCCACCAG
CCCAGGGGGGGGGGCACTCGCGTACTTCTGTGCAGCACAAGTGTATTCTT
TTAGCTGGATACACTGTAAGTAAGGGTGTGTGTTTTGGGACTGCTGAATT
GCAAGTCTGGCAGTAAAAAATCGGATGTATCTTTACAATTTTGACTCGCA
CCATTTTGATTTGTTTTGCGCATTGAGTCGACATCTCAGGGCCATCTCTG
GCTCATTTTCAGGTGGCTTCAGCAGAATAAGATACGAAGTCGAACTACAC
TCTGTAAGGGTCAGAAACGTTCGGTAAAATACACTGTAAGGGTACTTTTT
CATTGCTCATGGGCTGCACTGTAAGGTTGCGATTTCGAAAACCATTTTTT
TGACAGCACATTCTGTCGTTTAGAAATCGAGTGCCTAGGTCTGAGACATA
GGATGTAATATACTTTTCTGTGTTTCCACTCTTTTTTCTTTTAGACATTG
ACTTGCTATCATCAGGATGGTTTCTTACAAGACAACATTAAGACTCTTCG
GTCTCCTGACATTTATCATCTTGGCCTCTCTCGCAAACGCAGAGAAAGAT
AAAAACATCTATCTTCCGGAAGAAATGTTGTTGAAGTTCAACGGAAAACC
GTATGTTCGAGTTTACCAAGCAATGAAAAGCGAGCAAGAAGAAATTCGAA
GGGCGATTAACAAGAATGAATACCCAATAATGACCGATGCAGACGAAAAA
AGGAAGAAAGCAAATAAAGAGAGAATCCAGCTTTATAAAGACATCTATCA
AGATGAAGATGGTCATATTATTATTTTCCCCAATAGCCAGGTCGATGCAA
AACTTTACTTTGGGATCGCTGATTACTGTAACGAACTAAAGTATATGCAC
ACCTATACAACACCACCAAAAGATAATCCGGAAAAGAAAGTTGCTAAAAA
TCCACTCATCAAATCATTCATTGTGCCGTACGAAATTGTATACGATATTT
TGAAGAGGGTCATACCTGAAGATAACCAGAATGGGGATTTTTCTAACACA
TGTGATCTCCAATATGCAAATCAATTTGGTTTCAGACGTTCTGACGTTGA
TCTTTTGAGAGCGTACGCTCTTCCCAATACTTTGGTCACCTTTATGGAGA
ACACGTCTCCACTTAAAGGACAACATTTGGGACTTACCAAGCGCATTAAT
ATTATACCGGATAAGACAGCTATAAAAGACAGGTTTTTGCCAGAACACTG
TAAATTAACTGCACTTGGACGAATTTTGGAGGAAAAGAAAAAAACTGTCC
CCGAACGCAAAACAGTTAACAATGTCCTCGAAGATGTACTGAAGGTAGGC
AACAAAACTTTTTCTTTTTTTCTAACTTTGATTATACTGTAGGCGTCTTT
TTTATTTACTTGTTGATTGACCCTGACATTGACTAAATGAAAATCTCCTC
TAAGAAAATATTTGCTGAAAAATTGAAGTATAAAACATCACCAAACTCGA
ACCTAAGTTCACTTTTTGTTAGCGCTCACGATTGTATCGCGTCTTTCAAA
ATTTAAAAAATTGATACAAGTGGCTCTGGGTACGAGTTTCGAGATTGTAA
CATCACATAGACAGGGCGATTCATTTTAATTATATCACGGAATTCACAAT
TCAATGAGATTCATTTTCATGACATCGTGTCAATCTTCTATTTAAAGAAA
TCGATTGTGTTGTCCAAGATTAAATTAGGGAATTCATTTCACTCCTTCTT
TTTTATTTTTCCTGGGGTCTAGGTTTGCTAACAACAGTCATGTACAGCGA
AAAATTGGCTCAGTACCTTAAGGGAACTTTTTTTTGGTGAGAACTAATTT
TGACGAACGGTCGATTCAATTTATTTTAATTTTGACGAGAACTAAATTTT
GGCGAACCAGAAATGTATGCAAAAGGTACATAATCGGTAAGAGTCGACGT
CCGATCCAAAGACGATTTTTTATTTTCAAAGTAAAAAAGAAAGGGTCATT
CAAGCATGGAATTATTATAGACACTGGAAAAAACATGGAGGTAATAAAAA
TATAGATGGAGATACCACTCCTACTATTCTATTGTATTGTATCGTTGATA
GCAAACTGTTGCTTTGTTGCTTTGGGAAAAANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNATGTTCGCTGCTCAGGGAATCCTCGGCAATTTTTGTCAATTTTTA
CATATTTACTAATGCCAATCTTTCAACTATATTCTATCAAAATTTTGAGG
CAGCTGCTTTTTTAGATCTAAAGATATTTATAGCAAAGAACCTTCCACAA
ACAGCAAAGAATTCGCAAAATTTGAAGAAGTTTCAAAGGAGGCCGATTTG
AAAGAAATTTCTAAAGAGTTTTATGACTTCTCTCTGGCTATTACAGAAAA
GTTGTTACTCCATCTATTTTTTATTACCTCTATGGGAAAAACAACGGGCT
GATTTTTGCCAATTTCCCATGTACAGCCTTGTCTGCAGTAATGACATTAT
TGTTCACCCTCCTTCCACCATTAAATGATTTTTCGTAGCATTTTAATTGC
ATTTCTCCTCAAAATACACTTATCCAATTCCCAAATGAGATTTTAAGTTC
TCCTCCGAGATTCAAACTCATCTAGTTAATTACTAATTATACGTCGTTAT
GACGTTTTAAATTTCGAGAAAGATGCAAAAAGATGCTATGTATAAGAAAT
TGAGTATTGACACCAGAAATTTTCAAACTTCAACTTCAAAAAATCCACCG
TGCCACCATGTGCCACCGAAAGATTTTCATACCACAGTGGACTCAGGTGA
GTTAGGGCGTGTCTAGATTTTTAAAAATCACAAATCCCGAATCCGCGACC
AATCAATAGCACCCATTCTCAGGGATTCACTCATGGATTTTTAGATAACC
TATACTTTAAGGTTTCAGGACCCGGTTGTTACGTAATTAAATATTAACCT
AAAAATTAATTATTAAAGAAAGTGTGACTTATGACGTCATCAAATTATGA
CGTCATAAATCGTAAATTAGCTCTAACTCTATAAGTACATGTCAAGTTTG
GACCAAAGATGCATCTTAATGGTGCCGAACTTTTCAATGAAAAATATTTT
GATAATTTTGATGACGTAGGCAAAAAATGCAAAGAATCGAAAAATGCAAT
TTTTTGCTGACGTCATCAAATTTTTCCAAAATTTTTTTTTCAAAAAGTTA
CATTTCGGTTAGATGCATCTTTGGTTCAAATTTGGGAAAGATTGAACATG
TATTTTTAATATTATAGCGATTATACGATTCATGACGTCACCAAATTCGA
TCAAATTATGACATCATGATTACAATTCTTTAACTAGTCATAGCTTTCAC
TAAATGCCCCCACAGAAAGGTCATGTCATGCACTTATAAAGCTTTTAATG
CTTTAAAAATTAAAGCATAAAAAATAATCAGGAATAATTGATTAATTTAA
TTATTTATTGATTGATTGAAAAAAAACCATATTCCATTAACAAAATACTT
GAAGAATTCATGCAGCTTGACAATTAAATAAAATTCAAAGAAAAGCTGGA
AAAGCTTCTCAAAAACATTATTTCGAAAATCATGGTATCATTATCTTACT
GACTTTCACATCTCCTTGAATAATAGTAAGATGATAAGATGATACTGCGT
ATAAAATTTCAAATTTATCAACAAGTTCTGCGCCATCTGAAATAGACCAA
TCCTAGTTAAGGCCCGGGCTCCACCTGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCGGGCTCCACCTGCGTACGCTGTGATTGCAGTCA
AAAGAAAAATTAAGGAATGTCATTGTGGTCCATTCAGACGTACAGTCGAA
AAGTTGAAATGTGCCTATTTTTTTTCAAGTGCATAGTACTTTTTCATGAT
GCAATCTTTTCTCCAAGCTGAAAGGATTGAAGCCATTAAGATACGATTGC
AGTGCAGACAATGAAGAGACGGGCCTTCAGGAAACTAGACTTTTTGAGTT
TTTAGCTATATATTCTCACTTTATGGTGTTCCTGTACGACTGTCTGTGTG
CCTAGTCTAACCACCGTTAAATTGGAGCTATTTCACCAAACTCCTGGAGC
GTAAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNATAGATTTACCACACTGAACAAACAGTGAAAACACTCTAGGTG
AGGTAAATCTATTTTGAAGACCAAAAAAAACCATTGATTGACATTCAGCA
CATTCAACCAATTTTGGATTCAACTTTACTTATGTGTACATTCAACCTTT
TTGTACTTTGCCGATATCTTGTTTTACCAAGTTAAGAAGGACTTTCTCGA
GTTACAATNCAATTCGCAAAAAATCGAGATTCCAGTCCAATATATTGCGT
GAAGCTATGAATGCCTCCTCAGTCGCTGCGCTCCTTGCGGGGGCAATAAT
TAATTTTTAGGTTAATATTTAATTACGTAACTGAAACCTTAAAGCCATTG
ACCTTTTACATAGTTATAATGTATGTTGATTCAGCAGATTGAAATAATAA
ATAGAATCTTTTNTCTATAAACAATAAAGCTAGTTATTTATATATAATAA
CAGACAAAGATAAATTACAGTTTGAACAAAAATATCAAATGTACATTTGA
AAACTTGAGCAATCTCTAGCTGAAAAACTTCCAAGAAAAGAATTGAAATC
ATTGCTGAAATGTATTTAGTATTCAGTTTCAAAGACAAGAAACAAAATTT
GACATACAAAACACTTTTTCATTTTTCCAGTCAAAATGAATCAGCTNCAA
AAACAAAAACAATTCGCAAAAAATCGAGATTCCAGTCCAATATATTGCGT
GAAGCTATGAATGCCTCCTCAGTCGCTGCGCTCCTTGCGGGGGCAATAAT
TAATTTTTAGGTTAATATTTAATTACGTAACTGAAACCTTAAAGCCATTG
ACCTTTTACATAGTTATAATGTATGTTGATTCAGCAGATTGAAATAATAA
ATAGAATCTTTTGTAATGAATAAAGAAAAATGTGGAGCAAGATTTTTTTC
TTCCTTTTATTTACAAATTTGAAAGGACTCTTTTATTAAAATTTTGCAGA
CATCAGTTTTAGACGAGTCGGGTGTATATAACACCGTATAATTCCTTTAA
GGTATATAGGTACTTTAGAGCCCTAATTGGATCTCTGAATCTGGCTGCTA
TTGGTAGCGAAAACTTAGGGTAAACTGTTAGGTTTCTGAGACTTGCCCTA
AGTCACTCGAGGAGCAATGAGACTCACGTCTAATATATGTCAATCTCAGC
TCTTCTCGGAGAAATATTGGAAAGATATTCCCAATTCAAAATTTCGTGTC
GTTATAAGCATTTTGTTTGATTTTACTCGTCTGATGATGTTTTTCTCACA
CCAGATTTCATAAATGTACTCGCTTAGTATTCTAGCATTTATTTCTAAAC
TTTTAGGCAGGAAAAGTACGATCAGAAAAAGTTAGAGAACTTTTTAGAAA
TAAGAGTTTTAATCATTTTTCAAAATCAGAGTCCTTCGAGACGCCATGAC
AGTTGTCCTTTGCGGACAAAGTCTGTACATTGATTGTTCTGAAACAATAG
AAACGAAATGAAATCACAGTATGATTGTTTTTATTGAAACGATAAGCAAA
TTGAACTTATATTGCCTTTGTTTATTTTAAGTAATTAAAGAACTTTGCTA
ATTCCCAAAACACTAAGTACAGTTTGGCTAAGAGGTCATTATTGTATAAG
GATAAACTGTTGAAAAACTGTTTTATCATCACTGCCCCTGTTTTTGTTAA
AAATTTGGAGATGTTTCACAGAAAAGTGCTAGCAAGGGGTTCGGGTCCCA
TATCTTCCGAAGGACTTTTCCGTTTGCCTTGAAATTTCACAAGCAAAAAG
ATTTTTTGAAATTATCTCGGACTATCAAAAGTTACACTTTACAGGCATTC
TTGTTTCCTTTCCACTGCCAATTATATTTGAATACACTTTATTTTTGCAT
TTGATAACAAAATATTTTTATTGCCTTAGAAATACGAAAATTCTTCGGCA
AAGGCGAGCATGTTTTTACCGAGTTTGTTTGCAACAAAGCTAATAGTATA
CATATCTTTAAAGTGAAAATTATACTATCAGCTTTAGAACCTAGCCTGGA
TATCCAAGCTCAAAATTTACCTCAACATACAAAGTTCTAAAATTATAGAG
CTTGGTCTCCCTAGAGAATAAAAGTGCAAACCAATGTTTCCAAAACTTTC
CTAGCCAACCCAGGGCAGCAAAACAGAAATTAATAAAAAACAGCCTCACA
AGATCTAAAACCATTTAAAACATCCAAAGATTACACCAGAGTACATAAGC
AAGTCTGTATGCATTATCATGCATTTTCTTGGAAGATGAACCTGCCTCTG
TTTTCCTCTTTTTACCTTTTTCATGTAACAGAAAGCTATATCTTTACCCG
GGGGTGGGGTACTAGGGTTGCGAGCTGACGGGGGTGGGATGCCGCCCGAC
ATTCAAACTTTGGACTAAAAAGGAGACAATAAAGGAAAATTTTGGGAATT
TTACGACCCTTAGCGGGACAAATTTGACCAATTTTGACCAAATTTCGATC
TTTCAGGGGGTAAAAAGTTGAAATTTTCCTATTTTTCCGACCCTTAGTGA
GACTGAAATTTGATTTTCTGATTTTTCCGACCCTTAGCGAGACTTTTGGA
AGTCCGAAAAAGGTACCCTTAAGGGTGGTTCACATCGTACCCTCCATTTG
CCCAAGTACGGGGCGATCTTTACTAGCAAGTGGAGGATTATCCAATTTTT
GTTTCAGAATTGATCCGCTCCATGTAGATCGGTCCTTATGGCTTTAGTGA
AGTGAGCGCAAGCAAGCGGATTGCATTCTCATATGAGAATGTAAAACACT
CTAGGGAGATCAAGCTGTAAACCAGAACATAAAATATCAAAAACTAGACT
GTGAAATAGTTTACAGCCTGTATATTCAGGCTACTTAGAACCTTGGCTAT
AAGGACTGGTTTTTGACACAATAAAGGTTAAAATTGTGCTTCTTGGTATA
GCTGATACTAAGAAACTGAAAATGGAGTTTATAGCACAAAAGGTTATCAT
TTTTCAAAATTTAATCTTTTTGTTATCATCATACTTTTTAGAAACCTGAC
GAATTGGATATGGATCTGATACCGAAAGTCGTCAAAGATAATGATATGGA
GACTGGGATCGAACCAGAATGGTTGGAAGCAAGCGAGAATTACAGAATAA
AATGGAGCCTCGCGAAACGTTCTCTCGATATTCTAGAAAGCTTTGGAAAA
ACATTGATTGACAAAAAATATAGGAATGAAAAGAAACTCACGCCGATTAA
ACGTTTTAATGGTGCTAAGAATATTTTCGTTCAGTTTTATGGAAAGAAGA
GAGGGGAGCAAATGGAGTCTCAAATTGAAGGCGGATTCTTAAATGATTTA
GCTTACTTTACTGATTCAAAAGAGAGACAGGAGATAACGCTGATAAAAAT
GGCAGGAGAATTGGTCAGATCTGCAATTGAAATGGATAAAAATAAAAAAT
ACACGGAAGAGACAATCAAAGACACGATGAATATTGCTACCAAAATAATG
GAAAAGAGTATTCAAGATAAGGACGATCATGAAATGTTGAACAGTGATTT
TTATTGCAGCCGTAGACTAAATTAAAAAGTTGGTCTGCTGATGGTGGTAG
ACCCTGATTAATAATCAAAAACATTCTTAATATTTAATACAAAAATTTGT
TATTTTCTGTATAAACAAACATTACACACACTATATCATAAAACCCACAA
ATATTACAAAAAATAGGAAAAGTATAATATGAGATGGACCATAATTTGTT
GGTCCAACATTTTAAGCATTATGTACACCACGTGACTAAAAATTACATAT
AATTGTGCATATCAAGATATTGTTAAAAAATTTTACAAAATAAATTAACT
GTTTTTCATCGTCAATAATAAGTCTTTCTCCCTTTTTATCTAAAAATTTT
TACAAAATAATTAAAAANTGTCAATAATAAGTCTTTCTCCCTTTTTATCT
AAAAATTTTACAAAATAATTAAAAAATAAATTAAAGATTCCTCTAAGAAA
AGTTTATTTTGTTTTAGCCATTGCTGATTTTAATTTTCGGTCTGCTCTTT
CTTCACGATCGGCTGCTGGCATTTTCTGATGTTGACTCAACAAATTTTCT
CGTTCTTCAAGTTCTTTGCGGTAAGCTTCTAATCGTTTTAATCTTTCAGA
TTTGGCGATCATAGCTTGAGTGAATTGTGAACGCGCGGACGATAATTTAT
CGTTGGACGAGCGAACAATTTCGGACATTCTTTCCATTTCGGACGGAGTT
GAACTGTTCCGTGCAGCGTCCACATAACCTGCAACTTCACTCTCCAAATT
TTTCACTTGCGTAGAAAGTTCTAATGATTGACGTGTCAATGTTGTGAACT
CTAAATCTAATTCATCAATTTTATCCTTAAGTTCGTCGACTTGCGCTTCT
AAGAAGGTCTCATAAAAGTCTTTTTCTTGATTTTCAATAATACCACTCGT
CATCGGACGCTGTCCTGTTTTCGGACGCGAAGTTGTGGGTCGCGGTGGAA
CGAACGAGAGAGCGAGCGGTGAACGGGCGAGCGCCAGATTACGCGTGTTT
TGTTTGGCGATCTCACGCGACATTTCACGATTATTGCTGGGTACGTAACG
GGATACAGGACGCTGGTCTTTGACCTGGA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00007067TCONS_00007067Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00007067-proteinTCONS_00007067-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:323325..333153 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.02	0.07	0.02	0.03	0.1	0.05	0.14	0.03	0.04	0.19	0.62	2.36	0.52	11.45	30.03	0.28	0.25	0	0.02	0.04	0	0	0.02	0	0.02	0	0	0	0