XLOC_003166 (gene) - C. hemisphaerica

Overview
NameXLOC_003166
Unique NameXLOC_003166
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000054:163113..167515+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003166 ID=XLOC_003166|Name=XLOC_003166|organism=Clytia hemisphaerica|type=gene|length=4403bp|location=Sequence derived from alignment at sc0000054:163113..167515+ (Clytia hemisphaerica)
GAGAAAAGTTTTCGAAGTTTCATGTTTCAATATTTCTACCAGCGTTTGAC
TTgcagagtttggtacaggctgaAGTATTCCAAGAAATTGGTTAATCTGA
AATCGACACCCATTTTTTGCTGTtataaaaagacaaaacaaaagCGATAT
AATACATGTTCATAGTAGATTTTGTGTTCGTGTATAAGGTGAAGAGTGCT
TTGAAAAAACTCGAAAGTGATATTAGTTACTACACGTAAGCGAGTAAAGT
AGTGTTTTTCAATTAATAATGGCAATCTCTAAGAAAGTGGGTAAGTTTGT
TGGAGTATATAAACTTTTATCTGTTTCAACTCGAAACATGCTTTggaacc
ccggggggggggcactgggtttgcggacggGTTTGGAACTTTTCCTTCGA
TAAGTTCATTATATTTTTAGCAGGatataattttctttgttttatctttA
ATCCAACATGTCGAGGTCTAATCGGAGACACTCGAATTTCAATTTCGCAA
AGTTTTCGTTTGATAGGGCGAAATTAGAAATTGGGGCCTTCACTCACTTC
TTGGGCCTTCTTTTCggtagattcgctggattgtaggattgggattcaag
gattcggattcggattcaggattcgtaaaaagctttgtaaaagaaaattg
aaaaaagatattgacttcaaaccaaaagatcttgaaagattacataacat
agagcagttcttaacaaaaattgatataaaaatgggcgtggccttgacgc
taattagggaaattcccctttctaggattcaaatttccagccCATTGCAt
actttggctagttctcagtcccctcgttgaggTTAAATCAATtcctaaac
acctgatcttatgaccgggacatgtcaatgattaatcgtggacaaaattt
attgacaaaaagggcgtggcctcgatacTAATANNaaagggcgtggcctc
gatgctaattagggaaattcccttttttaggattcaaaacacaaaaattg
caaagtttggcaaagtttggctagttctcagtcctctcgctgaatttgga
tcaatttctaaacacctgatcttatgaccggggaatttccctaattagca
tcgaggccacgccctttttgtcaatgaattttgtccacgattataatcat
tgacatgtccggtcataagatcaggtgtttagaaattgatccaaattcaa
cgagaggactgagaactagccaaactttgcaattttcgtgttttgaatcc
taaaaaagggaatttacCTAATTAGCAACGAGGCCAccccctttttgtca
ataaattttgtccacgattaatcattgacatgtccggtcataagatcagg
tgtttagaaattgatccaaattcaacgagaggactgagaactagccaaac
tttgcaatttttgtgtttttgaatcCTTAAAAacgggaatttccctaatt
agcatcgaggccacgccctttttgtcaataaattttgttcacaattaatc
attgacatgtccggtcataagatcaggtgtttagaaattgattcaaattc
aacgaggggactgagaactagccagactttgccaaactttgcaatttttg
tgttttgaatcctaattaagggaatttccctaattagcatcgaggccacg
ccctttttgtcaataaattttgtccacaattaatcattgacatgtccggt
cataagatcaggtgtttagaaattgatccaaattcaacgagggatctgag
aactagccaaactttgccaaacttttcaattttcgtgttttgagtcctaa
ataagggaatttccctaattagcatcgaggccacgccctttttgtcaata
aattttgtccacgattaatcattgacatgtccggtcatggtaagatcagg
tgtttaggaATTGATTTAAcctcaacgagggaactgagaactagccaaag
ttTGCAATGggctggaaatttgaatcctaaaGAGggaaatttccctaatt
agcgtcaaggccacgcccatttttatatcaatttttgtcaagaactgctc
tatgttatgtaatctttcaagatcttttggtttgaagtcaatatcttttt
tcaatttctttttacaaagctttttacgaatcctgaatccgaatccgaat
ccttgaatcccaatcctacaatccagcgaatctaccCTTCTTTTCTTGAG
GAAATATGTTCTAAAGATGGTCAATTCTTTCAAACAGAAGATGAGATTGA
ATTCTCAATGAATCATTTTCTAAGGTCTAAGATTTATAACAGTTGACACA
GGGACAattaatgtttctttttttttttggaatcagcAAAGTTCAAAGCA
TACTCGTGTCACATAGATTATGTCCCTAAATGCAATAAATTCAgcgcaaa
aaaaaaactgaggGACTGcatgacgtcataaaacttaaaaccttaaaggt
tttgttttgaagtacaattcaacatttttttaaaagagcCAGTAGATTTT
TTATGAGGCTCACAtttgttcttattctgttcttatTCATAGGTTAAAAC
TGAGGTATTCAAGGATTTATAcctaatttttacaaatttgacccctaaat
tgcttgaaattgagtaattccaggctcagcattgttcttaaacagttctt
atttttgagcaatttttagcctcattgttcttatgaaattgttcttaaac
tgttcttatttttgggcaattttgagcctcactgttcttatgaaattgtt
cttataaaaggaaaaagtgtgtaaatatgaaatttggtcCTTTGACAGGT
ATTCGGGATccctaattttcgaaaaaaaaatgacgAAGACAGCAGAAATC
GaacattttgctaaaatttcttgaaagaaTGCAAGAAAATAATTAAcagt
gatttttgaatttctacatcctaatacgcttcttttgaaaTGTAAATGAC
CAAAGACCCTCAGCTTTCTGCGCCAAACTTATGTCCTTTTTGGGATATGT
CATAAGTAaaccaaagtaaaaagtttttcatccttttttgagAATTCCCT
CTTAAAAATCATAGcgtatgaaatatttttacagcaGTAGCCAACTTATG
AACATTAAATTGTTGAGATACGAAAAAAGTAAGAGTTAGTACACTTGTGA
AATACTTCAATTGCGACCCATACAACTTGTTTTAGTCAGTTTTTTTTCAA
CCTTATTCTTCATCACTTTGTTCAGTTTTTTTCCATGTTCGTCACAACAT
TCTATATTAACTGTTCTCCTTTTTTCCTTGCTAGTTTTCATCGGAAATCC
AGGCGTTGGGAAAAGCACTTTGCTAAATTGTTTACTGGGGCGGAGCGCAT
TCAAGAGTGGCGTTAACATCGCCACTGGAATTTCATACCAATTGCAAACA
GAAGTTGATGAAGTGAGGGGCGTCACTTTTTGTGACACGCCCGGTCTAAA
AGATGTGGCAATGCGAAACAAAGCAGCTATTGCAATCACCGAGGCGTTGA
AACAAGGTGGAGAGTTTCTCGTTACGTTTACCATCACTTTGGAAGCCGGA
AGAGTCAAACCAGAAGATATTTCCACCATCGAAGCGGTTGTCAAGGCAGC
TCCTGAAATTAGGGACTTTGGTTTAGTGATCAATAAACTGTCGAAGAATC
TTTACAATCGTCTCTCATCGAACGCTTCTCAAAAAGAAAGTGTCATCAAA
GAGGTCACAAAATCCTTGACATGCAATCAACCCTCTGTTCTCCTTCTACA
AAACAACGATAATCTTGAAGGTGAAGAAAACGCTCACACTAATTTACCAT
CTTTGTCTGATTTTGTGTTCCGTACCATGAAATCTATCGTTATTCACACA
AACAATGTGCAAGACGTGAACGCTGGTCAACAATACAATGTCGCTTATCA
AAGGGAAATGGCAGCTAAAATGAAGGCTGAAAAACAAGAAACCGAGCGCC
TTAGAAAAGAGAGAGAAGAGGAGGCTAGGAGACAGGCTAGACAGCGTCAA
GAAGCGGAGGATAGAAGGAGACGACAAGAGGCTGAACGACAACAACGCGA
ATGGGAATATGAACAACAACGGAGGAGGGAGCGTGAACGAGAACAAGAAA
GATTACAACGTGAAAGAGAGGCTAGGCAAGCAGCAGAACAAAGAAGGCGT
CAAGAGGAGATAGAAAGAGAAAAAGTGAGACAACGACAGGAAGAAGAAAG
GCGTCAACGCCAACTAACATACCAACGCCAGCAAGCAGCCGCCCGCGCAC
GTGATGACGGCTGTATTATATTGTAGTATGAAATAAgaataaatcttttt
tgttaaaaagacTTTTTGTCACCCATATACTTGTATACACCTTATTTACT
CAAGGTAAGATGGAACATTTAATGTTTAAGCCCAAAATTGAATGACTTTT
AGC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00005556TCONS_00005556Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00005556-proteinTCONS_00005556-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:163113..167515 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.51	2.42	1.27	0.98	0.32	0.31	0.71	0.62	3.04	9.68	2.1	4.16	19.86	17.58	106.59	41.24	37.66	42.55	44.27	41.65	18.12	14.86	36.68	42.04	161.3	70.22	130.35	218.64	87.87	70.58