XLOC_002620 (gene) - C. hemisphaerica

Overview
NameXLOC_002620
Unique NameXLOC_002620
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000047:721989..731801+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002620 ID=XLOC_002620|Name=XLOC_002620|organism=Clytia hemisphaerica|type=gene|length=9813bp|location=Sequence derived from alignment at sc0000047:721989..731801+ (Clytia hemisphaerica)
TGGGATTTGCAGTTTGTTTAGTACCTAGAAAACCTATTGCGTCTgtgaaa ttatctttcttttttctacAGGTAAAGTAACCCAGATGtagtttttagaa aaaatacgATGAGTGATCAAGGTAAATCAAACATTAACAAACAGCAACAT TACATTCTTTCAAATCGTGGTGTTGTAAATAGAGATAATGGAGCCAGTAG TATGAACCGTTCCGGGCAATACCAAGGGAGCCAAAACCTTCAAAGTAATG ATTTGGAGACAGCATTTGAGAAAAAACTTGGAATTTCTAACATGATGGCC CTTGCAGAAGCTTCAGCAGGCGATCGAAGATCTTATCCCAGAGTAGCTTC AACAAGTTCAAAGCATGCTTTTGCATTACAAAATATACGCAAAGATTTAG AAGATATGCCCCAACAACAAATGTCAAATTGGCAACATTCTTTTGACAAT GAACTTTCAAAAAGTGATTACAGAAGCAATTCCTACACAGACCTTCATCA ATCCCATAGGTCAACAGACTTATCAATATTGATGTCATATGGTTTGGATG AGGTTAGTtagttttttaattaatttttggttGACTCGAGTTGAAAGTTT GATGATTGGTAGGACCCTCCTGGCGCTCCGGAAACGTCCGGAGCAAAAAG TGCCATATTTTCGTGCTCTGGAACACCGGAAGATTCCGAAGCACTTCATG TGTTCCGTAGCACGATTTTAGTCTGAGAAGTTGAATCTTACTCAAAAAAA TGATAGCAATAAAGCTCTGACGTTTAAAAGTGTGGGGACAGAGCATACcc agacagttacatcaaaatgcctcgaaaatgtcaatatgaaaattgcgtaa tcagagaacgtatgtctcgctcattataaaaaggctgagacaaactttca ataattggattgtaacatcgagttaagtctcttttgttaagtcaccaggg ggNNNNNNNNNNNNNNNNNNNNNNNTTCAACTTGacaattcgtttaaaac tcagcctcctaaatatttggggtaggtaaaatatgtacaaagaaattcat acttttccaacccggctNNctgttctcacacttatgtctttttttttcga gtccttttccgtgattgcttttatttatatttttaaagacaggtaagaag gcatattgatgtaactgccagaCCATTTTCTAAGTCCAGTAAGTCATTCC AGTACATTGAGATTGTCTTGAAAAATCTGTGTCTCACGAAGCcaaaatac cgtcaactgctttaacttgtgactatctgacaaaacatgggacgacaatt cagccaccatttctccgaacctccaaagtcatttgatttgagttaataaa CAGCGTATTAAAAAACACACCacttctctttcgcaccgagtacagtgtag acctaaagctctaaaacagcatctaataacatgaaaaccagaatatgatt cttcaatgggaatcaaaactataaagtgcacatACTAACATCAATTTgac agatctaacaaaattaataaccacactgtcatcattgacaataaaacaaa caattttctgtcaagagccttgtaaacattccaacaacttccatcgaaat gatctatcacagctcaatctaccatttttagcgcggtccaaggattgagc cgaaaacgctccgcgaactcctgtgcgggtgaaaaacttcaatctgtcaa tcattttctcaaaattttgtatgaagagttgaGTCTATACTgcccatgtt tcaaccaatcgtcctaagtagagcagttgacggtacaaaaCTAACAGTCT GGGAAATCTTCTTTATTACTCACTTAACTTCTGAGATCTAAACATGCAAT TACATGGCTATCAAAATTGTAGAATTTTTTAAGGGCAGAATTACACGCTT ATCACTGTTTGAATGAGTATTAAGCatgtacagtatgtggccctcAAAga gtcgatcaaatttaaaatttctctaaaatcttgaggaaaagacgttttac aaagatttttgctgcatgaaaaactttaacatctctactttatttcccag aagttccttttcaaaattttcaattttaccaatatttttcaatcccttaa agataggtagcttttttctaatggcccccaaaactgaggtttgcaatttt agcgatttctcaagatatctttaagatatgaatacaaaattttgaccata gttttgaaatatgatttggagggttttgggcataaatttgtttgttaaCA TTtctacagtatacccctggttgtcaaaacggaggtttggggcccccaaa acgtaggcgtaattaaaatcaaattattaagcccagtggtaataggggga gaaactatgaacatattcgtgttttcccttaaatgtaaagttcatgattt ttataaaatatttcaagattttcgatgatgcaaaACTGTCCaaatagtcc cgctgctgagatcaaaaaaagtggctagaaaacaattttcgtgacacaca tcttagtactaactttttttggtggaaactcacaaattagtatatgtaga ttccaaaatcaaaaagtttccacgatattatcgtgcaagtgacgagtaat tggcgattttttgcgtttccaagCAAAAATGCAAGGCTTGgaaatcatga tttttggggggtcttcaaattaaaaaagacctatatcacatgatagagct cttcaaactgagcaaaaaagtgtattacacNAAaaaacctatatcacatg atagagctcttcaaactgagcaaaaaagtgtattacactaaagtcccaac ttctctagatcaaaagttatgggcctatttgtggtcgaaaaggtgtttaa ttttgcataaattaatgcagattgtggggaaattccctgttttccatcag ttttttaccccaaataggccaataaattgTGATCAATTGATCAGATTAGA GCCAATTGCAGGGGTCACACTCTGcataaaatcataaaacatggctacga atggggttctaggtccccctaagttttaggtccccccacttttcagtaac gttcaggtcccagttgaaaAGCAAAACATTTGAATCGCTTCGCAACaatg gaatgtcttctttttgTGGTGTGTGTACCACCCCCCTCGCACGCAGATTA AAATAAAACGgtagaatatttaaaaacagaacaccaaaaccaaacaaaaa aatatttttacaatttctttattATTGTAATTAGCCCCCAGAACTTTAGT GCAGCCCTtcaggtccccccactttttagggccccccccccccaaataag tgGGGGTGGGGCGGAGCCATGTAAAATGGCATAAAATTTGACTTTAGTTC AGAATTAGCATGAAATAAAATGCCTTGGCATAATGAgcataaaattttaa atctcttacacaaattttgagttgaaaataGCTCACTTTGGGTAATTCTA GAGGCATGTCATGGTGAGAGAAAGCCCTATCCCATATCCCATATTACTTT AGGTTCATGTTTTATTGCTTATTCAATACAATATTGGTTCACAGCCCTTT TTACATTCAAATTGTAATTAAcccctttgtttttttcatattacaaactt ttcaaattgttccaatTTCTCCTAATCCACTTTCAACCCTTTGTACTTTG GTTTGACACACATGAAGCTTAGCCCTAATTTATTTAACTTTTAGTTTTGT AATGAGAAGGTTGTTTTGAGGCAGGAGTAATCTCAACTGGGCTGgattgt aaatttgcaataacaCATGGGCGTAAATTTTAACTGTGTAATTGCATGGC TTGCGGCCTCAGGAGTTAGGCACAATTAAGAGGTTTCTCCAGACGGACTA AAAACCAATcaaggaccctcccggcgctctGGAAACTTATAGAGTTTTCC GGAGTAgctaaaaacaatatttttctcTCCAGAAAGTTTCGGAGCTCTTC TAGTGCTATAAATCTCGAAATATCGAAACTACCATGAGTCGgctgaattt tttaaaatacgCACGTGCGCAGTTAGTTTTCACATGTGCTGATAACTTCC TCCGGAACACCAGAAGTGCAACAGAACGTTTCGGAGATTCTGGTGCAGAC TAATCCCTGAAAATCGTGCTCCGGAACATCGGAAGTGCGGAAGAAACTGT ACATTTGTACATTTCTATATTAAATGAAATCATAATAAATCTGATACAAC TAGTACTGGCTAGTACAAAATGAACAAAATCTTAGAAGTAAGACCACAAA TTTTGgttgcaaaaaagtttttaacaaaGTAGTAGTAAGTAATtctgcga ccgcagtcagaggcgacccgaaggctcctctttcaatagctatctactcg aaggtaggggagggtgccactctttctccctggattgctctgcttaccct tgatccttctcttaattgatgagcatcaagcagagaggcatcaagtacga ttttgagaatctttggtatgctctaccactgtactacgttTGCTTAACAA AGACTTTTTTAGTTTAACGTTTTTCATATTAGAAAATGACCAGACTGAGT AAAAAGCCCTTCTAAAAGAatcttttcactttattttataGAACTCGGCA AAAGAAGCTCTTTGCTTGTATCCAAATAAAAGCATTGACTATATCATCGA TCTGCTGAAAAGGAACAATGTTTTTAACAATACACACCGTGCAACGCCAA CTCAGAGACTGTTTGGAGTAACCCAGAATGGTCCAAGAAGTCAAAACATA CCTATGACCAATNGTGGTGATCTCATGGCTCTATTGATTAAGTTCGGAAT TTTCAATGAACCCTTAGCTCGATTCTACATCTCTGAATTGGTACTGGCCA TCGAGTCTGTTCATAAGCTTGGTTTTATTCACCGTGACATAAAGCCAGAC AATATTTTAATCGATAAAAACGGACATATTAAACTGACTGATTTCGGACT TTGCACGGGCTTTCGTTGGACGCATGATTCAAAATATTATCAGCCGGAAC CGGAAGGAGGTGGTCATACACGGCAATATTCANGATGGAGTAGGCTTCCA AGTATCAGCACAATACCCTGAACGACCAATCTCTGGGAGCTATATGTCTG ATGGAGACACCATTTCATTAGATTCTGGGATGAGTCAATCATCACGTTAT TACGATAAACCGTCAGTTACGTTGAGACAAAAACCTGATCGTGCCTTAGC AAATCAACAACGACCATGGTCTGTTGAAATATTGCACAAAAACGTGATGG ATGAAAGTAACAAGCGGAGTTACATGGAGGCCTACGCACATAAACCACCG CCACCCTATCCTGGGTCAACTAAGAACTCTTTAAATCGAATCTCAAGCCA AGAAGGTGAATTTCAAGCAGTAAAAAACACTCCAATCACAGTCATCTTTG ATCAGGAAAATGAGAGAGTCAATGTTGTTGGAGGAATTCCAGATGGCTTT GAGAGTACCAACCCTTCATCTTCCTCTTCAGGTCAATCATCGCCACCCGC ATCTCAGAAGCATCCACCGCCCTACAATTACCTTAAACAATATAACAACC CACCAAATGGTCAACAAAAATCTTCACATTCAAAACCTCCAGTAGTAGTG CAAGGTAACTTCAATACCAACAAGAAACCAACAGTCACCTATGCTATTCC TACGCCCAATGCTAGTAAATCTTCCGTGGATGAGAAATTTAAACCAATCt cagaatctttaaaaagtGATCGTGGTTCACCACCGCCGTACCCAGGCTCA AACTCGTCAACTACATCTAGCAATCGTGTTTCTCTGAATGTGGACGATCT TGAAAGCTCTGTCGGATACTACTCGACCCAATCATCTTCACAATCTGCAG CATCTTCTGTTAAAGATAATGATTCAACTTCAAGCACATCACCAGTTCCA GGGGATGATGTTGAGCGATCTTATTCACCACTCCCAGTAATTCAATCCCT CACTTTGAACAGTAATTATGATAAGACAATGATTATTCACCAGAAAAACC AAATCGATTTTGATGAAGTGAGTACGGACGAAACAGATGAAGCTTTTTCC ACAAGGTTAAAACATTATACCCCTCAAGCATACAAGTTTTATATGGAACA GCACGTTGAAAACTTATTTAAACAACAAGAACAACGCAAAATACGGAGGC AACAGTTAGAGGCTGAAATGTCTCGAGTTAGACTACCTATTCAAGCACAG GAACAAATGAGAAAACTTCTAAATCAAAAGGAATCAAATTATATTCGTCT TAGACGTGCCAAAATGGACAAGTCAATGTTTACTAAAATAAAAGTTGTCG GAGTTGGTGCTTTTGGTGAAGTGAGTTTAGTCAGGAAAAAAGAAACTAAT GCTTATTATGCCATGAAAACTTTGAGAAAGAGTGAAGTATTACGTCGAAA CCAGGTTGCTCATGTCAAAGCAGAACGTGACATTCTTGCCGAAgctgaca atgaatgggtagtCAAGCTTTATTATTCTTTCCAAAACCAGCAATATTTA TACTTTGTGATGGATTACGTCCCAGGTGGTGATCTCATGGCTCTATTGAT TAAGTTCGGAATTTTCAATGAACCCTTAGCTCGATTCTACATCTCTGAAT TGGTACTGGCCATCGAGTCTGTTCATAAGCTTGGTTTTATTCACCGTGAC ATAAAGCCAGACAATATTTTAATCGATAAAAACGGACATATTAAACTGAC TGATTTCGGACTTTGCACGGGCTTTCGTTGGACGCATGATTCAAAATATT ATCAGCCGGAACCGGAAGGAGGTGGTCATACACGGCAATATTCAATGGAA CCAGAAGGGGGATGGGAATCGCTCATGGACGACACTAATTGTAATTGCAA AAACCATCGGATGCAATACGATCTCCTTAAACCGCTACAAAGACGTAAAT TACGCCGTCATATGAGATGTCAAGCTCATTCGTTGGTCGGCACCCCAAAT TACATCGCACCAGAAGTGTTGATGCGTATCCCTTATGGTCAACAATGTGA TTGGTGGTCGGTTGGTGTTATCATGTACGAAATGTTAATCGGTCAGCCAC CCTTCCTAGCACAATCTCCTGCTGAAACACAGTTTAAGGTGAGGATACTT GTTTCTCCACAGCtgcaaattgaaaaattatttagCTTCTGTTTTTTTAG GAGCAAGTGTCTACCCCTATATCGCAGGCTTGcaatatgcttagcattct gttgtttttaaacaataaaGCCATTGGTTCGGTACCAAAAACTGatcctg catatgcttataaacactgttcttatagaaaaacaaacatttagtTCTCT CTTCGGTGGTAATTGCCCCATCGTGTTTTTATGCTTGGCCGTCATTCCAA AGATCTGGAATAAACAAATATAATTTCAGGGACAAGCCCAAATGGAAAGG CTTGACAATTGAACAAAAACTGATAACAAACTCACAATCTTTGTTTACAG GTCATCAACTGGCGTCAAATTCTAAACATTCCAAGGAACCGATTGGAACC AGAAGCGGAAGATCTGATCAGGAAGCTGTGCTCTGATCCTAACGAACGAA TTGGAAAAGATGACGCAGAacaaatcaaacttcatccataCTTCGATGGT GTTGACTTTCTAACCCTACATGCAGAGAAAGCACCTCATGTCCCAACAAT AAAGAATGCAACTGATACATCGAATTTTGATCCCGTCCCCGAAGCTATGA TCGAGGATGACTTTGAAGACCACGCAGAGAAAAACAacgttaaaacaaac aaagaaggACCTGAGTATGCTTTCTACGAGTTCACGTTTCGACATTTCTT TGATGATGGCGGACTTGTTAATCCTAACCCTAATACTGAATTCGAGGTCT CTGAAACGAATGAGAATCCGAAACAAGCTAGCAAACGTGGTGCTGCGTCT GTTGGTAATAATTCAATGACTGTTCCTACTAAAGTTTCCGCAAGTTCGTC CAGTACATCAGAAGAGAAAACACCGATATATGTATAAAttcgatttcaat tttgattgatttttcgtttttgttttgaattagaTTTTCCGGTTAGGTGG ATTTTTGGAATGCAAATTGTGCAGTAGTTCTACAAATTTACACCACAAAT GTTTTAAGTTAGTTTAGAACTTCAATCGCAAACTATTCTCAAGGGATAAT AAAGGGTACTAAataattatttgagtaaatattGGCTCTTGGAAATTGCA TTTGCTAAAGTCGACTCGTCATAGTTCAAACGAATGTACTaacttaaggc ttggggacacgtgaagattttttttgcgttggtgcaatgcaacatgttCT ATCctaccaacacaagaaaaaaagtttgtgtcccatggtttcttttttgt ttcatgggacaaaaaatgagagaaatacccaaaagacatgctgattttgt ccctgggacaatggagcaaaattgatttgaatcaattttgctccattgtc ctagggaaaaaagtgagatttcacttttattggttgaaagaaaaatggga tggagacacgagaaagcgtttcaggctTTCAGGGtgatgggatggagcat gttgcattgcaccaacgcgaaaaagacttctcgtgtccccaagcctttaa agTAATTTAGGCCATTTTTTTCGATTATTCGAACTTAACTGAAACGATTA TTGACCTTGGTAGTTATGTTATGAAATGTCGACTCTATAGTTAATCGACA TAAAACAATAAAAGTATTTTTCAGTgtaatacagtgtgtcccaaaaaagc gaacacatttttatgtttatagtaaaatcctcaaaacccACTACCTaaac tacaatcagtgacaaaatacttggcacaaaagggaaattcaccgggaagt tttgaaaccacaatcgatttgcaagtgctctaaagtaggttcgaagggta gagttttaatgctagacttaggatagattaagattttactttacATAaca ttttttccctttttttgggacacagtGTATATATCTTGGAAATTCTACAG TGCAtctataaaaaagtaaaaagcatTAAAGAAAAATCCTCAAATTCATG ATCCATTTTACGTTTTCTTGAAAACCTACCTAATTGTTTTGGAATAAATT GCCGAAAGAATTGACTGGTTCTAACGATAGATTAGATGTTaattaccaaa aatatttcaaggagTTTTCTTTATATGCTATTACCTATACTGTCTGGTAC TGTATTTCAGCGAGTTTATCgtaggatatcgagggcgacggtaagtgaat aTGACGCAAAACAAAGTCGCTAATTGATATACGACTCTACATTGCCTTTG ctctcacctaaacagacgacggtattttggtgtttttacagtcgtcgagc aaagtggatgGTGATTTTGGAGatgacatgtcaactttgctttataccgt ctccctcgaatacataaactcgctattgttaTCTCTTCAGCTGCACTAAT AGACTTAATACTATCGTACGCCATTCCAATTTAATATTTTGATTAAGATA CTATTTTTCACTTATTCTACCgcctgaaattatttttttaaagtaaaaaa atgtatgagataatttatatttttgtatttaaattAAACTATGTATCTCT TTTAGtacttttaatgatttttttggtttattttttcatacctttttatt cgaatttttgtcattattttttttgtgaGAGGATCTGTAAATTTTTGGTG AATTGagagaggaaaataaaaaggcTTTATCTATaatttttcatcgaatt tttaCTGATATAATcaattaaagaaaaagaaaagctcAAAAGATCAAATT AGAAGAAATCCAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00004648TCONS_00004648Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00004648-proteinTCONS_00004648-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:721989..731801 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.22 4.44 3.77 3.66 23.51 17.81 13.76 15.4 5.55 10.91 10.12 5.82 6.9 6.73 5.21 7.06 7.5 6.42 6.5 7.03 8.3 8.33 10.93 11.4 6.77 7.24 8.67 8.41 15.63 16.06