XLOC_002617 (gene) - C. hemisphaerica

Overview
NameXLOC_002617
Unique NameXLOC_002617
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000047:665071..668910+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002617 ID=XLOC_002617|Name=XLOC_002617|organism=Clytia hemisphaerica|type=gene|length=3840bp|location=Sequence derived from alignment at sc0000047:665071..668910+ (Clytia hemisphaerica)
AAAGAGATAAAGATATTTTGAAACCGTGTCAAAATCATTCAAATTATTCT
GAAGAGTCGAAAACATTAGCAAATTATAGCTTGGTAAAAGTTCACCCAAT
AAAAAATGATGGTGCAAAGCCATTACGTATAGAAATCCAAACTTTTGACC
TcaataaaaatccgaaaacactCGGTGGTGATTATTGGCTTGGGTTTTTA
GAGATCAAAACTATGAAGTATGCACTCCGCTTCATAGACTATGGAAATGG
AAGATATATTGCATACTTTAGACCACATCTTGCTGGATCGTATACTTTGC
ACCTCACTTTAGAGCATAGTCTATGTGACGGATTACTAGATCCACCATCG
AATTGGTTTCAATTAGGTGAGTTGAGTAGTTAGAAGGAACGGACGCGctt
attattgttattgttagGTTAACCTCATCCCCATGTATcacaggctttat
ttacgttacttttATGGACGCCAGGTTTTCTTGGTCTCTTGTGATAAATG
CTTGAttgagaccatgttcagacgtcaCGGTTCCGTATCGTTCCGAAACG
AACCCGTTCCGAACCAAGTGTGAACGTTAATAAATTCGAAAcctcaaaaa
agaagacgtcataaagcaaaacagatcgaaacggtttcgctccactataA
ACTTCGGAAccgaactgctccgttttcttgctccgaaacgttccgaaacc
aatatgaacacttcCTATCCTTAAAGAAAACCATGCTAGAACGATAgaaa
accgtaacgtctgattTTGGCCTGAGAGAATCTTAGACTActttatctta
tttttttttgtctctCTTTGACTCGAAGTCTTCATAACTCTGACGATTAC
TGTTTCTGCTTGGGGTTTCAGGTATAATAGAGACTCAAATGTATAATTTC
GCTTCGTCTAAAGAAGTGCTTTGGTTTTTGACGAGCTCCGACAAACAACT
GTTGCTATACAATAAATTTCTTACCATATGAATAAAAAGCACAAAATATC
ATCTTCTTTGGAGACTTTTTCTATCGaggtagactatgttatagtctaag
acgaatcactatctaagaaaaaagctcaaagccgaagaaaattcacaaac
gagtttttttgccgaaaagagtttacagtcggtcgAGTTGCCagttcttc
gaaactctcccgccgatttttttccgtataccgccataacaccataccgc
cattttttcccgcctttactatcactgtaacatATGATAACATCGTCTAC
TATCGAGGAGGCCCCTCCCCAGCAGTATTCGTGATGGTGTGATTGGCGTT
TTTCAAGTTCGTGATTTCgggatttaagattttaaagtgcgtGATTGCAT
GATCGGAAGACCAACGTgatcaacgtgatcgtgatagaaaggaaatttaa
ttcgttaacgtgatttggaattttttttgtgtaatTTAAAAGGtgactgg
gggggcctcatcGAGAATACAAAACAGCAAagttatctgaaaaattttca
tttttNaaacggtttcgctccactataAACTTCGGAAccgaactgctccg
ttttcttgctccgaaacgttccgaaaccaatatgaacacttcCTATCCGT
AAAGAAAACCATGCTAGAACGATAgaaaaccgtaacgtctgattTTGGCC
TGAGAGAATCTTAGACTActttatcttattttttttgtctcTCTTTGACT
CGAAGTCTTCATAACTCTGACGATTACTGTTTCTGCTTGGGGTTTCAGGT
ATAATAGAGACTCAAATGTATAATTTCGCTTCGTCTAAAGAAGTGCTTTG
GTTTTTGACGAGCTCCGACAAACAACTGTTGCTATACAATAAATTTCTTA
CCATATGAATAAAAAGCACAAAATATCATCTTCTTTGGAGACTTTTTCTA
TCGaggtagactatgttatagtctaagacgaatcactatctaagaaaaaa
gctcaaagccgaagaaaattcacaaacgagtttttttgccgaaaagagtt
tacagtcggtcgAGTTGCCagttcttcgaaactctcccgccgattttttt
ccgtataccgccataacaccataccgccattttttcccgcctttactatc
actgtaacatATGATAACATCGTCTACTATCGAGGAGGCCCCTCCCCAGC
AGTATTCGTGATGGTGTGATTGGCGTTTTTCAAGTTCGTGATTTCgggat
ttaagattttaaagtgcgtGATTGCATGATCGGAAGACCAACGTgatcaa
cgtgatcgtgatagaaaggaaatttaattcgttaacgtgatttggaattt
tttttgtgtaatTTAAAAGGtgactgggggggcctcatcGAGAATACAAA
ACAGCAAagttatctgaaaaattttcattttttcactcAGGTGACTCACA
CGGGCGATACCAAAACGAAGATGGTTTTAAAATTTCCGATACTTTACTTA
CTGAAGCCATTCAACCAATAAATTTCGAAGTACCATCATCTGAAATCAAA
AACAGAAAAGCCAATTTAAAATGTCAAAGGGAGAATTGTATTCTTAATAC
AAATCATGGTTATTGGAGTGGAAAAAACTTCATTGATTTGGCAACAGGGC
GACCTGTAACCGAATTTGTGAGCAGAAAATTGAAGCGAAAGTTGAAATCC
TTTGCTGCATTCGGTGACTCGCTGACATATCGGTTCTATGGATTAATCAA
AGAAAAATGCTTGAAACTGTTCTATTTCTGTAATCCTGTCTATACTTGGT
CTtataaagttaagaaaaaagagctgaaaaacaaaatcatttatGATGGA
CTAGATTTCGACGAATCGCGTTTCTTGGGTGAAATCCATGCCGCAATGAA
AGGAAAAACTgtctttttgatcaattttggtCTCCACCATGTTTCAACAC
TGCCGATGGAACGTTGTTTTAGATTATTCCAACAATTTATTAAACTGGTT
AAGATAAAGCGCAAGAAAGGGATTGGTCCGTTGGTCATTTGGAAAACAAC
AACTCCACCCTTCTTGGAAAATAGGCAAGATAAAACAAAGAATGCAGATT
GGCATCACTATCGCACAAAACAGGTAAACATGTATACCgaacactccctt
ctcacagacccggtaggatttctccctccaatggggatgaaaataacgga
ctgaaacgcaatggggatcgatattcccatattttttatggctgggaatt
tcaattcttttgttttcaagtcagaaaattcagtggggatgggaaaaata
gcataatattttgcagtgagtattgtttttgtttattgttaccagtgggg
acaaaaattgaaggatgatttcccaccggagacgatattttggccaattt
ttccagtggatctgtgagaagaGTTTATCGTTCTTTACATTTGCAATTTT
AAACTTTACTAGGCTCACGTTTGACATAAAACATTATTTCGATCATCAGT
CGGTTGTGGAGATTTTGTAGAGAATGATATACAGTGTGCTATTAGAAATT
TGTGTGAATGAGAGTTAAAATTACAAACGAAGGTCTCAGTTTTGAAGAAG
GAGCGTAATACCCTTTTTTGCCCATTTTGACAAAAGACGTTATGtagttt
caaagaaaatttcgtTGTGGGAATTTCGCCtcggtaaaaaatattttact
ttttaaatcttttcttgttttttcatttcagaggATAGAAGTATGGAATA
GTTATACAATAGAAGAATGCTGCAAAGCTGGTATAGATGTGCTTGATGTC
TATGAAATGGCACTATCGTCACCAAAAAAGACATTAGATGGAGTTCATTA
CCCGAATACTGTATTTGAATCTGCTGAAAatgatttattg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00004644TCONS_00004644Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00004644-proteinTCONS_00004644-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:665071..668910 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.03	0	0	0	0	0.09	0.17	0.12	0.22	0.07	0.07	1.84	0.86	0.93	1.02	0.53	0.44	0.76	1.19	0.24	0.35	0.24	0.33	0.23	0.34	0.05	0	0	0