XLOC_001737 (gene) - C. hemisphaerica

Overview
NameXLOC_001737
Unique NameXLOC_001737
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000025:864428..868291+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001737 ID=XLOC_001737|Name=XLOC_001737|organism=Clytia hemisphaerica|type=gene|length=3864bp|location=Sequence derived from alignment at sc0000025:864428..868291+ (Clytia hemisphaerica)
ACCAggtcaaaaaaaatcacaaaataacaaaaaaattagaaaatatttaG
TTGAAAGCCATGGACAAAATAACGAAGATATTTGCAGATGTATTCAATGA
ACAAACTTGGCATAAAGTGAAAGATAACACATTAGCATTTTCTGGCTTGA
TATTTGGTGTTCTGGTGGTTTTCGTCCTCATTGCTATTGGTAAGATGCGT
TTACTAGATAAttaacacccctgtttcaatACTCCGGTCGTCgttcacat
gactaaaggttcaatctcaaaattagtaccttacaaaattcaaagtttta
ctgtggtggtcaTCTTAGATTGAGACTGCCCTTTTTCATGTAGAGGAATA
GTCAATGTTTTCATATGACAAAAGGCCACTCTCAAAACCAGAACAGAATT
GCAAGATTTCAATTTTCCAAGACTctgattttgagattgaactTTCAGTC
ATGTGAACGACGCGGTGTAACTTCCAACTTATTTGTGAAAAGGGGTTATT
ACCTAATTTACACCCTCTGATTGGGGAGATTTTTATGTTCTGTACCTTTT
TTACCTGCTGTCAAATgtcattttctttgtgttttgcACCCAAGTTATCT
AAATATCAACAGTCACTCAAAAATTCACCATTAAttcgtttattttttta
tacttCCTTATACTTGGTCTTTTTTCGTTTTAAATTAAACGCTGTCTGGA
AATAATTTACTATTTCAATTTCTGTACTTCAGGCGGAAAGGCtaaaattt
ctattaaaaaaaattacctattttaaagcaattttaaaattacccatcaa
atttttcaaattttaatatttttcaattcataTAGGTTGGTTTGTTGtat
ggaaaatgtttttagtTCGATTCCCATTGATACGCGAGCTGGTGTACGGT
AGCAGTGCGGAGAGTGAACATAAATTAAAATCCAAAAGGACGTCATCTGC
GTCCAGTCAGAATGGATTACAACCACGACGAAGCGCTCGGTTACGGCAGA
AGCAAGCATCAGTTGATACTGTCGATGAATAATAAATCAAATAATATTAA
TGGActtgtttatgaaattttgaactgATTTTTAAAACGGATGTTTTAAT
GTGCACAGACCAATGTCAATCGAATAATAAACCTGGTCTGGAAGTCGGGC
TGTATTGAATTTAGAGGATGGTAAGtaaaatgggctattccagaaaaaat
ttgtaccccctatgttgaggagatcttttttttttaaggtgacccccctg
gattttttttcaccttggatttttttctcccatttctttggaccaccctg
gattttcgacctcgttatactgaccaccctggattttcagcCCGATTTTA
CTGACTCCCCtggattttatcattcaaaaaactAGACcgccctggatttt
ttatttttcagaccacccaggacgtcacacctcctgaacatagggggtac
agactatttctggaatagccccaTCGGGGAAGTTGTTGCANTTTATTTTT
CAGACCACCcaggacgtcacacctcctgaacatagggggtacagactatt
tctggaatagccccaTCGGGGAAGTTGTTGCATTGGAATGGAAATGTTAT
TCACCCAATTAAACTAATTCAGATTTTCTATCGATATTGATCATCTTTGA
TCATGTGACCCAAGGAACTTTtaataaaacattttataaATCTCTTTTAT
TTAAAGTTTCTTGCGTGACCGATATAAAACAATTCAACCTTTTTGCTTAC
GTCTCCTAGCCACCAGTTAGATATTGAACTAATTCTACTggttttcgttt
ttttgggTACGAATCTCTGAAGGTTTTCTCATTCAGACAAGAGCATTGTA
AATACATGGTAACACGAcgtttgtttcaaattttatcgGGAGGTGTTATA
GTTTGAGTGTACCTCACAGATTTAGAAAGCCcgaacccgaagggctagac
gtcgtactttaagccatcgcaagcaaaaaaaagtgactATCGGAAAAAGT
Attattgctattgttttcggaaaacccgcgaagcttctgattggtcaaga
gctgaaattctattgtaatttcACATGACATAGGTAGGATTttctaccta
accacggcacactttcagtcgaagcacgacatctacccttcgggctttat
aaatctaagGTGTACCTACCATTTCAAGAGTAAATGTTACTTGCCTACTT
TGATAAAATTAATATTGTTTTAAAAGCCTTCGTTTTAATAGAGGTCCAAT
GCACTTATGGCAATTGTTACACATTTTTGGTTTCGATTTTGTTTGGGTGG
CACAACACCAGTCAAGGGAAGGAAGAAGTTTCGCATGATTTCAATTAATG
AGGATAATAAGAATTCTGATAATgaatctattttgaagattaaTTCTATA
CTTTAATTCTGTTGAATCGTCATATAATGGCTCTCTACATAATCAACATT
TTTTCGGACAGATAAAAACCACTTTttcattccaaaaaaaaactctATGA
TTCATTATTGGTAAATAATTCTTCAGTCTTTTACAGTGCTTGATACATAA
GTAGAGCGATGTCagtcaggaagaaaagacaATTTTTTATGTTGCTACTC
TGAAGATTGTCAcaaaagtggcatgaaactgccagtagcaaaataaaaaa
ttgtctttttttttgaccGNTTTTTTGGGTACGAATCTCTGAAGGTTTTC
TCATTCAGACAAGAGCATTGTAAATACATGGTAACACGAcgtttgtttca
aattttatcgGGGGGTGTTATAGTTTAAGTGTACCTCACAGATTTAGAAA
GCCcgaacccgaagggctagatgtcgtgctttaagccatcgcaggcaaaa
aaaagtgactATCGGAAAAAGTATTGTTGCAATTGTTTTcggaaaacccg
cgaagcttctgattggtcaagtgctgaaattctattgtaatttcACGTGA
CATAGACATAGGTAGAATTttctacctaaccacggcacactttcagtcga
agcacgacatctagcccttcgggctttataaatctaagGTGTACCTACCA
TTTCAAGAGTAAAGGTTACTTGCCTACTCTGATAAAATTAATATTGTTTT
AAAAGCCTTCGTTTTAATGGAGGTCCAATGCACTTATGGCAATTGTTACA
CATTTTTGGTTTCGATTTTGTTTGGGTGGCACAACATCAGTCAAGGGAAG
GAAGAAGTTTCGCATGATTTCAATTAATGAGGATAATAAGAATTCTGAAG
atctattttgaagattatTTCTACACTTTAATTCTGTTGAATCGTCATAT
ATGGCTTTCTACATAATCAACATTTTTTTGGACAGATAAAAACCACTTTt
tcattccaaaaaaaaactctATGATTCAGTATTTaaccctttttgaaaaa
tatgtaatattgttatATTAATGGTAAtagaaaatccaaaaatttgtaca
aaattaGATATATAGTTGTTATACATTTTTACGTATTTAATGCATTTCTC
ATAGGAGATAAGAACCATTTGGGTCACACTTAACCAACCGAACTCTAAAG
TGACTAGAATGGCCAAATCGTACTNTTATACATTTTTACGTATTTAATGC
ATTTCTCATAGGAGATAAGAACCATTTGGGTCACACTTAACCAACCGAAC
TCTAAAGTGACTAGAATCGTActgatttcgaaaaatataagCCATTCTAG
TCTTCTTTTTAGAGTTCGATGGATAATATTTTCTATTAGggttttaaaaa
acaaatttaacaggttttaattttaatcgtgcaagtttttagttttaaaa
aaatgtcttaatTTATAGTGTAGCTTGGTtatgtactttttgttttagct
CATAAGCATGTGTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00003130TCONS_00003130Clytia hemisphaericatranscript
TCONS_00003131TCONS_00003131Clytia hemisphaericatranscript
TCONS_00003132TCONS_00003132Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00003131-proteinTCONS_00003131-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:864428..868291 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.68	4.67	7.64	8.42	13.81	10.29	18.58	19.95	18.26	15.82	21.86	21.63	22.63	21.93	16.57	18.48	21.15	22.38	12.91	14.3	20.22	20.98	17.88	16.79	24.5	23.2	8.94	6.79	8.02	9.44