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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96535_cuf1 >transcript:BL96535_cuf1-protein ID=transcript:BL96535_cuf1-protein|Name=transcript:BL96535_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=229bp
NAREQQDGAGRDKSATFLYGAEVHHRAKRSVSNNGKFANKITLPTTLGGC
LSGNQGEPGRDGRDGPTGPTGPAGPAGPQGNSGPPGSSGPPGPAGPAGPA
GPQGNSGPPGSSGPPGPAASCCCSSTSTDKPPSSTSTDQPLAASTRAAMS
SSQSPTESTVTAFVTRKPCDLKPDLFFVLDGSGSVNEVHFDMVRRFVKDV
VSAFIIGLNSTRVGVMQYSSGNTLECNLG Run BLAST on NCBI mRNA from alignment at Sc0000006:6907823..6910870- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96535_cuf1 ID=transcript:BL96535_cuf1|Name=transcript:BL96535_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3048bp|location=Sequence derived from alignment at Sc0000006:6907823..6910870- (Branchiostoma lanceolatum)
AACGCCCGTGAGCAGCAGGACGGAGCGGGACGTGACAAAAGCGCCACCTT
CCTGTACGGAGCTGAAGTGCATCACCGAGCCAAGAGATCTGTGTCCAACA
ACGGGAAATTTGCGAACAAGATTACACTGCCAACGACTCTTGGGGGTAGG
GATATGACACTCACTTTGATATTTCCAAAATTACCACAATCATGAATATC
ACTTTGAATCCATCATAAACAAGACCATCAAAGATGGCAGATTCAGTCCT
TCCCTTAATGCTTTGCGAAAAAAATACTCAGCTCGCCCTGAGTATATATC
GGAAGAAGATTGGAAAACGCTGTTGGGTTGCCTTGTTATTTTCGTGCTTT
TCTCCTACGCAGAACGGCATAATGAATGTATGCTTCTTTTGAAATACATG
CAGTCTTTCATGGATTAAATCTTTCGTGTCTGCAGTCAGTCAAAATTATC
TTCATTGAAGTATTTTCTTACTGACTCTGTGCCAAATAACCCATATTGAA
TGTTGTGTCTGCTAAGGATGTCTTTCTGGAAACCAAGGAGAACCCGGAAG
AGACGGGAGAGACGGTCCTACTGGACCAACCGGTCCCGCTGGCCCCGCCG
GTCCACAAGGGAACTCCGGACCTCCCGGCTCTAGTGGGCCCCCTGGCCCC
GCTGGCCCCGCTGGCCCCGCCGGTCCACAAGGGAATTCCGGACCTCCCGG
CTCAAGTGGTCCACCGGGACCCGCTGCCTCCGTAAGAACAATTTGATGCA
TTTAAAGTGTTAAAATTCTGAAAGGTGACTTGTGATTGTTGAATTTTGTC
TATTGTCTATGAGTGAAGACTACTTTCTTTGTGATCTGCATATGTATGCT
TTCTCCGGGCAAGGATACAGATCGATAGTCTCTACCAGACTAGTTACGCC
GATTGATCATAGGGAAACATTTGCCCGGGGAGTTTGGCCACCATAGGGTT
TCATTTGCAGATGCAGTGAGGAGAGAGGAATGCTAACCTTCTCGCGGACT
GACTATTCTGGCTTATTATTCCCTTTTGTTGCCAAATTTTTCGACCCATA
TGTAATAGGAAGGCCGGCTGGTGGAGGCTAACAAATCAAAAGAAAATCCA
AGGTTGTATGTCACTATACTCTGGAAAGATCTCATCAAACTTATTCTCTT
TACTTGATTCTTAAAGAGAGGGTTGCGTTTCGCTTTATCGAAACTCAAGA
TGGAATATGTTTTCGGAAATTCTATTCCGGTAGAAACGATTTTTATCAAA
ACAAATTTATATCCACGCATACCTATACGACGAAAATGGAACCTATGAAA
AAAAATTAAATAACCTCTCTTCCATTTCAGTGCTGTTGTTCGTCAACATC
AACGGACAAACCGCCGTCATCAACAAGCACCGACCAGCCACTGGCAGCAA
GCACTAGGGCAGCGATGTCGTCTAGTCAGTCACCAACAGAAAGCACGGTG
ACTGGTATGTCATTTCCCCTCCTCAACTTCAAGATGAAAATGGAGATATT
GTGTGTTTGTGTGTGTGTGTGTGTGTTTGNTTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGCTTTTGTTTGCTTGTGGGTGTTAATGT
TTTTTGGAGTAGAACCTCTGAGCGGATTACGATGATATTTGGTATGTGGG
TAGGCTTTGCAAAGACAAAGGTCAAGGTTGATTTTGAACCCCTGGTATGT
GACCTTGGCACTGCAGCAGAGCTTTTGACCTGGACGTGCTATGGTCTCGG
TTTTGATAGACGTGATGTAAGGAAGAAGTGGTGTAGTTTTGGACCCCTAG
AGGCTTGCGCTGGAACTGCAGGGGTGTTTTTGTAAAATATCTTAAAAGGA
ATTACTGAACAAAGGCTTGACGGATTACCATGATATTTGGTAATTGTGGT
AAATGATCGGACTGTCAACATCGTGAACTTTGTAACTTGATTAAAGATGT
GCGTCACCAAGCATAGATTATGCAAATGTGAAAGTCATCTGCATAAGCAG
TATATTTCATGGAGATATGAGGTCTCCTAACTCTTGTTATTGTTGTTTTA
CTACTTGGTGAATACCATTGAAGAGCCAATAACTGAAAGGCAGTTGTACA
CCGGGTAGCTAGGGCCTTATACACGTGCACCACGATCGATTGGAATTCCA
ATTGGTGTATATTGTAACAAATTTGTAGTAAAAAGGTTTGCAAATAAAGT
TTGTAATCTCATAGCCAGAACCATTGAATACGTATTTGTGAATTTCTCTC
ACCTGACACATGGTATTTTACATCCCACCAGCGTTCGTTACACGCAAGCC
TTGTGACCTGAAGCCGGATTTGTTCTTTGTTCTGGATGGGTCTGGCAGTG
TGAACGAGGTACATTTCGATATGGTCAGGCGGTTTGTTAAGGATGTCGTC
AGCGCTTTCATCATCGGGTTGAATTCCACCAGAGTTGGGGTCATGCAGTA
TTCAAGCGGCAACACGTGAGTGTTTCTGTAGACAAGAAGTCTAAGATACA
CACATTTTACATGTTGAAAAACATATCTGTTCTTTTATATCTACTATAAC
CGAAAAGCGAGAAGTGGAATTTATCTAAACTTTGAGATAGTCATTTTTGT
TTTTGTTTTTTGTTACAGCATTAGTTACATCGTGAAGGGAAGCACTTGTA
TGCAAATGTTAACCTTCGTTTAATCACGGACAATAATGCACCAGTAGTAC
AAAATATTGTATTGTCCCATCTTTCTACGAATAGTCCATCCTGCAGCTGG
TTATGACAGACAGGATTTTGATTTTATTTTACAAATAAATGTATCTATTA
GGCTGATGTCAAGCACTAGTCAAGCTTTTCTGGGAGGGCAACTTGTAAAG
GTGCGTAAGCACCTGTTTTGCCCTCCCCTCACTTTTGTGGAAAAAAACTG
GAAAAATGTAAATAAACATAAACAAATAGACAAGCTACCAAAAATGGCGG
CATACAGGCCACCTGTTAACGGTAAGGTGAGATTAAATGTGATGTCAGAT
TCTGACAAGTCTGAAATCAATATTCCAGACTGGAGTGTAACCTGGGAG Coding sequence (CDS) from alignment at Sc0000006:6907823..6910870- >transcript:BL96535_cuf1 ID=transcript:BL96535_cuf1|Name=transcript:BL96535_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3435bp|location=Sequence derived from alignment at Sc0000006:6907823..6910870- (Branchiostoma lanceolatum)
AACGCCCGTGAGCAGCAGGACGGAGCGGGACGTGACAAAAGCGCCACCTT
CCTGTACGGAGCTGAAGTGCATCACCGAGCCAAGAGATCTGTGTCCAACA
ACGGGAAATTTGCGAACAAGATTACACTGCCAACGACTCTTGGGGGATGT
CTTTCTGGAAACCAAGGAGAACCCGGAAGAGACGGGAGAGACGGTCCTAC
TGGACCAACCGGTCCCGCTGGCCCCGCCGGTCCACAAGGGAACTCCGGAC
CTCCCGGCTCTAGTGGGCCCCCTGGCCCCGCTGGCCCCGCTGGCCCCGCC
GGTCCACAAGGGAATTCCGGACCTCCCGGCTCAAGTGGTCCACCGGGACC
CGCTGCCTCCTGCTGTTGTTCGTCAACATCAACGGACAAACCGCCGTCAT
CAACAAGCACCGACCAGCCACTGGCAGCAAGCACTAGGGCAGCGATGTCG
TCTAGTCAGTCACCAACAGAAAGCACGGTGACTGCGTTCGTTACACGCAA
GCCTTGTGACCTGAAGCCGGATTTGTTCTTTGTTCTGGATGGGTCTGGCA
GTGTGAACGAGGTACATTTCGATATGGTCAGGCGGTTTGTTAAGGATGTC
GTCAGCGCTTTCATCATCGGGTTGAATTCCACCAGAGTTGGGGTCATGCA
GTATTCAAGCGGCAACACACTGGAGTGTAACCTGGGAAACGCCCGTGAGC
AGCAGGACGGAGCGGGACGTGACAAAAGCGCCACCTTCCTGTACGGAGCT
GAAGTGCATCACCGAGCCAAGAGATCTGTGTCCAACAACGGGAAATTTGC
GAACAAGATTACACTGCCAACGACTCTTGGGGGATGTCTTTCTGGAAACC
AAGGAGAACCCGGAAGAGACGGGAGAGACGGTCCTACTGGACCAACCGGT
CCCGCTGGCCCCGCCGGTCCACAAGGGAACTCCGGACCTCCCGGCTCTAG
TGGGCCCCCTGGCCCCGCTGGCCCCGCTGGCCCCGCCGGTCCACAAGGGA
ATTCCGGACCTCCCGGCTCAAGTGGTCCACCGGGACCCGCTGCCTCCTGC
TGTTGTTCGTCAACATCAACGGACAAACCGCCGTCATCAACAAGCACCGA
CCAGCCACTGGCAGCAAGCACTAGGGCAGCGATGTCGTCTAGTCAGTCAC
CAACAGAAAGCACGGTGACTGCGTTCGTTACACGCAAGCCTTGTGACCTG
AAGCCGGATTTGTTCTTTGTTCTGGATGGGTCTGGCAGTGTGAACGAGGT
ACATTTCGATATGGTCAGGCGGTTTGTTAAGGATGTCGTCAGCGCTTTCA
TCATCGGGTTGAATTCCACCAGAGTTGGGGTCATGCAGTATTCAAGCGGC
AACACACTGGAGTGTAACCTGGGAAACGCCCGTGAGCAGCAGGACGGAGC
GGGACGTGACAAAAGCGCCACCTTCCTGTACGGAGCTGAAGTGCATCACC
GAGCCAAGAGATCTGTGTCCAACAACGGGAAATTTGCGAACAAGATTACA
CTGCCAACGACTCTTGGGGGATGTCTTTCTGGAAACCAAGGAGAACCCGG
AAGAGACGGGAGAGACGGTCCTACTGGACCAACCGGTCCCGCTGGCCCCG
CCGGTCCACAAGGGAACTCCGGACCTCCCGGCTCTAGTGGGCCCCCTGGC
CCCGCTGGCCCCGCTGGCCCCGCCGGTCCACAAGGGAATTCCGGACCTCC
CGGCTCAAGTGGTCCACCGGGACCCGCTGCCTCCTGCTGTTGTTCGTCAA
CATCAACGGACAAACCGCCGTCATCAACAAGCACCGACCAGCCACTGGCA
GCAAGCACTAGGGCAGCGATGTCGTCTAGTCAGTCACCAACAGAAAGCAC
GGTGACTGCGTTCGTTACACGCAAGCCTTGTGACCTGAAGCCGGATTTGT
TCTTTGTTCTGGATGGGTCTGGCAGTGTGAACGAGGTACATTTCGATATG
GTCAGGCGGTTTGTTAAGGATGTCGTCAGCGCTTTCATCATCGGGTTGAA
TTCCACCAGAGTTGGGGTCATGCAGTATTCAAGCGGCAACACACTGGAGT
GTAACCTGGGAAACGCCCGTGAGCAGCAGGACGGAGCGGGACGTGACAAA
AGCGCCACCTTCCTGTACGGAGCTGAAGTGCATCACCGAGCCAAGAGATC
TGTGTCCAACAACGGGAAATTTGCGAACAAGATTACACTGCCAACGACTC
TTGGGGGATGTCTTTCTGGAAACCAAGGAGAACCCGGAAGAGACGGGAGA
GACGGTCCTACTGGACCAACCGGTCCCGCTGGCCCCGCCGGTCCACAAGG
GAACTCCGGACCTCCCGGCTCTAGTGGGCCCCCTGGCCCCGCTGGCCCCG
CTGGCCCCGCCGGTCCACAAGGGAATTCCGGACCTCCCGGCTCAAGTGGT
CCACCGGGACCCGCTGCCTCCTGCTGTTGTTCGTCAACATCAACGGACAA
ACCGCCGTCATCAACAAGCACCGACCAGCCACTGGCAGCAAGCACTAGGG
CAGCGATGTCGTCTAGTCAGTCACCAACAGAAAGCACGGTGACTGCGTTC
GTTACACGCAAGCCTTGTGACCTGAAGCCGGATTTGTTCTTTGTTCTGGA
TGGGTCTGGCAGTGTGAACGAGGTACATTTCGATATGGTCAGGCGGTTTG
TTAAGGATGTCGTCAGCGCTTTCATCATCGGGTTGAATTCCACCAGAGTT
GGGGTCATGCAGTATTCAAGCGGCAACACACTGGAGTGTAACCTGGGAAA
CGCCCGTGAGCAGCAGGACGGAGCGGGACGTGACAAAAGCGCCACCTTCC
TGTACGGAGCTGAAGTGCATCACCGAGCCAAGAGATCTGTGTCCAACAAC
GGGAAATTTGCGAACAAGATTACACTGCCAACGACTCTTGGGGGATGTCT
TTCTGGAAACCAAGGAGAACCCGGAAGAGACGGGAGAGACGGTCCTACTG
GACCAACCGGTCCCGCTGGCCCCGCCGGTCCACAAGGGAACTCCGGACCT
CCCGGCTCTAGTGGGCCCCCTGGCCCCGCTGGCCCCGCTGGCCCCGCCGG
TCCACAAGGGAATTCCGGACCTCCCGGCTCAAGTGGTCCACCGGGACCCG
CTGCCTCCTGCTGTTGTTCGTCAACATCAACGGACAAACCGCCGTCATCA
ACAAGCACCGACCAGCCACTGGCAGCAAGCACTAGGGCAGCGATGTCGTC
TAGTCAGTCACCAACAGAAAGCACGGTGACTGCGTTCGTTACACGCAAGC
CTTGTGACCTGAAGCCGGATTTGTTCTTTGTTCTGGATGGGTCTGGCAGT
GTGAACGAGGTACATTTCGATATGGTCAGGCGGTTTGTTAAGGATGTCGT
CAGCGCTTTCATCATCGGGTTGAATTCCACCAGAGTTGGGGTCATGCAGT
ATTCAAGCGGCAACACACTGGAGTGTAACCTGGGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000006 | genome | Sc0000006:6907823..6910870 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96535_cuf1 |
| Biotype | protein_coding |
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