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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96472_cuf1 >transcript:BL96472_cuf1-protein ID=transcript:BL96472_cuf1-protein|Name=transcript:BL96472_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=194bp
MAAQILHAILLVLVSSLGIVTSEDDGQVVSTATGQVRGTTTHTTDLPDKP
IYAFLGIPYAAPPVGELRYRPPQPALPWEGVREAVDYGSYCPQNISEANE
MDHPLKIGVNMTMSEDCLTVNVFTPTVAADAALPVLLWVFGGGFVMGLGS
PPGFESLAAHQDVVVVSFNYRLGVLGFLSTGDENIPGNYGFLDQ Run BLAST on NCBI mRNA from alignment at Sc0000045:1770527..1773323- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96472_cuf1 ID=transcript:BL96472_cuf1|Name=transcript:BL96472_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2797bp|location=Sequence derived from alignment at Sc0000045:1770527..1773323- (Branchiostoma lanceolatum)
TGCATGTCACAGGCGAACTTCAATTATGACTTGTGATTGGCTGGGCGGAG
GCATTCTATAATTGGTCAAGACGGGCCAGCTGGTACAAGATGTCGGACTC
ATGACGACAGAAAACAATATTGCGGCGCACTTGAATCCCAGGTTGAAACA
ACTTGAGCAGGCTTTTGCTATCGTAAAATCAATGGCAATTAACTAAACCT
GATTAATAACAATCGTTTTCGATCTTATTTATGCTTGCAAAATCCACTCA
GTACATTTCAGTGCAAATGCTCTGAAAATTTCGCCATATAGAAGCATTTA
CAAGGTTTACACATATAGCGTAGATGTAAGAATAATCAAGTCACCGAGGG
ACGTTTGACCTACAGGACGTTGGTTGCCATAACACCCCAAGGTCACATCA
CAAAAGGGCGTGCCGCTGAGGTCACCTACAAACATGGCGGCTCAGATCCT
GCACGCTATCCTACTGGTGCTTGTTTCCTCTCTTGGTAAGTGTATGTGAG
TGCCCTGGCAAAGGCTGGCATGCATTCTTTGTCTATGATTGAAAATGTGG
CCATAACACTTATTTGCATGGTAGACACATACAGAAATATGCGTCGTGGC
TTACGTATGCATCCGATTTAAGTTCAATATAAATGGTGGGGACTGGAACT
CGGTTTGGGGCTTAATAAGACACCATTGTTACTACGTTTACACCACAGCG
ACGTAGCATTGCCTTGTAATACCCGCACCCACCCCTACCTGACGAACAAA
AAGGCCTGTATGTAGCAGCCGTGATAGCTGTTTACCTACTAGTAGTACGT
AGTTTGTTCATGGGCCGACCTAATTCACCATAACAGGTGTACTTCCAAGA
CTAGTGTACTTGGCTAGTGAATTTAACGTAAGGCGTATAGCCAAGCTTCT
AAAAATGAGTCTTATAGGTAACCAATGCCTTCCCGAGTTTGACGTAAAGC
GTTGTGCCCATACACATACAACGCATTCATGCAATAGTACATAAAGCGAA
TGCAAAGGCTCTACTCGTATTGTCCGTGTTTGTTTTTGCGGCTCTTTGTT
GGAAGTGCTGTTACGTCTGATCGATCAAATAACGTCAGCTGTGTTCCAAT
CACTAGAAACCCCAGGCTTGCAAGATTGCCCCTATTGAAACGCGCTATAC
CTTGAAACATGAGGTGTTGACGATTGCTCGTTGCGTAAACAAAATGTTTG
AATAAGATAGGGTGGGTCAAAGGTCAAAGGTCGCATGCAAGGTGGACAGG
TGTGCAAGGTTCACCAGTTTTCAGATATTTTACAAGGGGAGACAGCCACA
GTAGCGCCTATTCGATTAATTTTCAATGTGTACAAGGCAGAAAGACCTAA
AATATATGTTTGTACTAAATCATCACATAAGACAGGAAAGTAAAAAGCAA
TAGCATCAAAGCAAATATAAATAATGGCAACTTGGCAACAGTAATTAAAG
TATGATCAACAAGAGCATGCAAATATGATTTACACAGATCAAAATAATGC
AATTTAGAATAGCAGATATAATGCTGTACTATATTGTCATAATTTTTTTT
CGAGAATCTGCGTTTTCTTGAGTATTATATAGAACAAAAGTTGAAACTAT
GTGTATATTGTGCAGAATATTTCCTAATGCATAATACACTATAGTTCCAG
GACATCATACCTTAGTCATAGAATTCTAACCTTTTCGACTGATTTATTAT
GAGTGTTTATCTAGCCACCTACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACAAAT
ACTCACACACACACTGACGTAACATAATGTTGTCGTTACTCTAAATGCAT
CGACATAGGTATAGTAACAAGTGAAGATGATGGTCAAGTTGTGTCCACGG
CTACTGGACAAGTCCGTGGAACAACCACCCACACAACCGACCTTCCCGAC
AAACCGATCTACGCTTTCCTGGGCATCCCGTACGCAGCGCCACCTGTTGG
AGAACTCCGGTACCGCCCGCCCCAGCCTGCCCTCCCGTGGGAGGGAGTCA
GGGAGGCTGTGGATTACGGCTCTTACTGTCCCCAAAATATCTCAGAGGCT
AACGAAATGGACCATCCTCTCAAGATTGGTGTGAACATGACCATGAGCGA
GGACTGCCTGACAGTCAACGTCTTCACTCCAACAGTAGCAGCGGACGCCG
CTTTACCGGTGAGGCTTGACAATGTACTCGTTTCTTGCAGAGAAAATTCA
AAAGACGGATACAAGTGAGTGGAGTCTTTGTGGCGATGTTCTTATGTGTT
TGTAGTGTTGATTTAATTTTTACGACACTGTCATTAGAATGGAAGAAAGT
AATTGAGAAGATAGTGTCACCACAAAGATCAGACTTTCGAAGGTTACAGG
AAGTAGAGTTCAAAGGTGGTAGAACTAGAAGTTCTTTATCAGACATGACA
GATATTCCAGGTCATGGGGTCAATGGAAGAGTCTACTTATTCACTGGGTA
TTGCTTTCCACCTGTCTGTTTGTGCATACGCAAAATATATGTTTAATTTG
CTAGTTAAGAAGGCAAAAAGAAAAATCTGTTCTATCAATATTGAGTCTAC
GACTATTGTTTGTAGGTACTTTTATGGGTTTTTGGAGGCGGATTTGTCAT
GGGTTTGGGTTCTCCTCCCGGATTCGAGTCCCTTGCTGCTCACCAAGACG
TCGTGGTGGTCTCCTTCAACTACCGTCTCGGTGTGCTGGGTTTCCTCAGC
ACGGGAGACGAGAACATTCCAGGGAATTACGGATTCCTGGACCAGGT Coding sequence (CDS) from alignment at Sc0000045:1770527..1773323- >transcript:BL96472_cuf1 ID=transcript:BL96472_cuf1|Name=transcript:BL96472_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1746bp|location=Sequence derived from alignment at Sc0000045:1770527..1773323- (Branchiostoma lanceolatum)
ATGGCGGCTCAGATCCTGCACGCTATCCTACTGGTGCTTGTTTCCTCTCT
TGGTATAGTAACAAGTGAAGATGATGGTCAAGTTGTGTCCACGGCTACTG
GACAAGTCCGTGGAACAACCACCCACACAACCGACCTTCCCGACAAACCG
ATCTACGCTTTCCTGGGCATCCCGTACGCAGCGCCACCTGTTGGAGAACT
CCGGTACCGCCCGCCCCAGCCTGCCCTCCCGTGGGAGGGAGTCAGGGAGG
CTGTGGATTACGGCTCTTACTGTCCCCAAAATATCTCAGAGGCTAACGAA
ATGGACCATCCTCTCAAGATTGGTGTGAACATGACCATGAGCGAGGACTG
CCTGACAGTCAACGTCTTCACTCCAACAGTAGCAGCGGACGCCGCTTTAC
CGGTACTTTTATGGGTTTTTGGAGGCGGATTTGTCATGGGTTTGGGTTCT
CCTCCCGGATTCGAGTCCCTTGCTGCTCACCAAGACGTCGTGGTGGTCTC
CTTCAACTACCGTCTCGGTGTGCTGGGTTTCCTCAGCACGGGAGACGAGA
ACATTCCAGGGAATTACGGATTCCTGGACCAGATGGCGGCTCAGATCCTG
CACGCTATCCTACTGGTGCTTGTTTCCTCTCTTGGTATAGTAACAAGTGA
AGATGATGGTCAAGTTGTGTCCACGGCTACTGGACAAGTCCGTGGAACAA
CCACCCACACAACCGACCTTCCCGACAAACCGATCTACGCTTTCCTGGGC
ATCCCGTACGCAGCGCCACCTGTTGGAGAACTCCGGTACCGCCCGCCCCA
GCCTGCCCTCCCGTGGGAGGGAGTCAGGGAGGCTGTGGATTACGGCTCTT
ACTGTCCCCAAAATATCTCAGAGGCTAACGAAATGGACCATCCTCTCAAG
ATTGGTGTGAACATGACCATGAGCGAGGACTGCCTGACAGTCAACGTCTT
CACTCCAACAGTAGCAGCGGACGCCGCTTTACCGGTACTTTTATGGGTTT
TTGGAGGCGGATTTGTCATGGGTTTGGGTTCTCCTCCCGGATTCGAGTCC
CTTGCTGCTCACCAAGACGTCGTGGTGGTCTCCTTCAACTACCGTCTCGG
TGTGCTGGGTTTCCTCAGCACGGGAGACGAGAACATTCCAGGGAATTACG
GATTCCTGGACCAGATGGCGGCTCAGATCCTGCACGCTATCCTACTGGTG
CTTGTTTCCTCTCTTGGTATAGTAACAAGTGAAGATGATGGTCAAGTTGT
GTCCACGGCTACTGGACAAGTCCGTGGAACAACCACCCACACAACCGACC
TTCCCGACAAACCGATCTACGCTTTCCTGGGCATCCCGTACGCAGCGCCA
CCTGTTGGAGAACTCCGGTACCGCCCGCCCCAGCCTGCCCTCCCGTGGGA
GGGAGTCAGGGAGGCTGTGGATTACGGCTCTTACTGTCCCCAAAATATCT
CAGAGGCTAACGAAATGGACCATCCTCTCAAGATTGGTGTGAACATGACC
ATGAGCGAGGACTGCCTGACAGTCAACGTCTTCACTCCAACAGTAGCAGC
GGACGCCGCTTTACCGGTACTTTTATGGGTTTTTGGAGGCGGATTTGTCA
TGGGTTTGGGTTCTCCTCCCGGATTCGAGTCCCTTGCTGCTCACCAAGAC
GTCGTGGTGGTCTCCTTCAACTACCGTCTCGGTGTGCTGGGTTTCCTCAG
CACGGGAGACGAGAACATTCCAGGGAATTACGGATTCCTGGACCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000045 | genome | Sc0000045:1770527..1773323 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96472_cuf1 |
| Biotype | protein_coding |
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