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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96455_cuf2 >transcript:BL96455_cuf2-protein ID=transcript:BL96455_cuf2-protein|Name=transcript:BL96455_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=432bp
MARTAVAGERQQHQRKNIKEHPPSILTCLWTRQSLWRFFLFVTSALVLAL
LVLLHFEENLPTSRETLPRPKGWLPPQPTNSSTREAERTATPCQPQTNVA
FMKVHKCGSTTVQKVFLRFGHRHLLTVALPRERDRPSIGTAGVITERDYL
DLPKGYPNIFAHHAIYNRTGFHKLMPRNTKYVAILREPLARLRSSFKYFK
MDRYFIGLRKAAGSKPPVLTYLDDPKKWDSLYRPSTRLDFVDHICNRNCM
SRDLGLQKKDYENKTAIENFIRNIERDFSLVMILEQFDQSMVLLRRRMCW
EVKDIIYDSIKPSKKSNYGKTQYNITDRMRQNFIENNYADYLLYNHFNEA
ITRQITEEGSGFQKELQNYKKMNTVVSKICHSRVRYPSYTVRSSKGPVFR
VDKLFCDQIKTERQRWDPVLRRDYTRSIFNRF Run BLAST on NCBI mRNA from alignment at Sc0000235:301335..304222- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96455_cuf2 ID=transcript:BL96455_cuf2|Name=transcript:BL96455_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2888bp|location=Sequence derived from alignment at Sc0000235:301335..304222- (Branchiostoma lanceolatum)
AGACCGTGTGTGTTTGACATACAGGCAGGCTACTTTTTTCATATTTCGTC
CAATCTTATCTTATACGGTATATGTGCTAGTACAAAAGTATAGAAGACCG
TTTTGTATTTCTTAGACTTAGAGTTTTCTTCTGTACCATGTGCCCATTCG
TCCAAGTCAGCTCTTCCAATATGACACGTTAAAATGAAGGACGGGTCAGT
TCAGTAGAGCGCGACCTTCACAGCTATATATGTCTCCTTCTCAAGTCACA
TGCCGGCATGGCGCGGACCGCAGTCGCTGGAGAAAGGTACGAGCATAGAG
CGTTAAGTAAACCTCTTTAATGTTTGTTCCCCATTCCCTGCCCTGTGGAC
GTGCTGTGTGTTACACGTAGCTTACATCAATGGTTATGTAGTCGTAAGTG
CCATACATTGTACTAGGCAGGCTTGTGTGGTGTTGGCCTAGCAATGTCAT
CGGCCGATATTGAACACTCACCCCCCTCCCCAATAGCAAGCATGCAGTTG
ATCGTTACCCGGCAACAACAGTACTGCCAGTTGCACAGTTCAATACGTCT
GATGCCGTTACAGCTTTTGCCGCCTTATTTTCTCGGAAAAATGACCAAGT
TTGCCACAAATCCCTGCAAATTGTAACAGAACATTGTCAGGCAAATTCTA
TTTGCCTGACGTTACAATTTCTAAAGTAAAATCATTGCAAAATGCAAAAC
CAGCTGTTTGCATCCATCAGAGAAACCACTCTCACAGTCTTCGTGGCGTC
ACGAATCTCACGACACATGTCATGGGATTTGAAAGCGCCTGCCTTTCCGC
TAGAGGGAGCTTCAGAACTAATACAGACAGTACATGACAACTGCGGCAAT
GTAACAGTTAGAAATGGACGATCACATAACGTTACCTGTGTGAAATATCT
AGAGTTTAATATGTAAATTTTTTGACAAAATATAACACAACAATGTTCAT
TCCACACATTACGTACTCCGCTCTCAAATGTCAGCCTCTGTTTCCTTAGC
TGGAGTCCAGCCTTGTTAGCTTTGGTCCGCTCCCAACGCTAGCGACGTTG
GGAGCGGACCAAAGCTAACAAGGCTGGACTCCAGACTACTGTTTCCTGAC
TTCGCCACCAACAAAATTCACTTTCTGCATACCTGTGGAACAAATCTGAG
CCCGGGCCAAACCCGGGCCAACTACGGACACACACCAATGCAAACAGACA
AATTGACACAATATCTACATACCAAGTACAACGATCCACGATGTGCGCAG
TTCGTGACAGCTCTTTCTTTTCCTGTAGGCAGCAACATCAGAGGAAAAAT
ATCAAAGAACATCCACCATCCATTCTAACATGTCTGTGGACACGGCAGAG
CCTTTGGAGATTTTTCCTGTTTGTGACGTCGGCGCTTGTCCTCGCTTTGC
TGGTGTTGTTGCACTTCGAGGAAAACCTGCCAACGTCTCGTGAAACTCTT
CCCAGGCCAAAAGGGTGGTTACCGCCACAGCCAACTAACAGGTAACGCGA
TTTTGCACGTTTTTAAAGTGCTCAGATTCTGTTTAATTTGTCTTTGCTAC
ACGCATCCAATCGGTAGATTGAAATCACGTAAAGAATCGTCCTACACCTA
TATAATGTTTACATCTTATTGTACATGTATATATGTTATTGACAAACATG
TATGACACCGTCACCTGTGTTACCGCACATTGTACTAGACAACTCCAAAA
GAGATTGATCTTTTATTGCCACATCAATTAGTTTCCATGATGAAAATGTC
AGGAATCCTTGCTGTCACATGGGCCTGCTTGACAAATTGATGGCTGTGAT
TTATTTTGGTGTTTTCTAGCTCCACACGTGAAGCAGAGCGGACGGCGACG
CCCTGCCAACCCCAGACCAACGTGGCGTTTATGAAGGTGCACAAGTGCGG
GTCCACCACCGTGCAGAAGGTCTTCCTCAGGTTCGGACACAGACATCTCC
TGACTGTCGCACTGCCCCGGGAACGAGATCGGCCCTCCATCGGTACTGCT
GGCGTCATCACGGAACGAGACTACCTGGACCTACCGAAGGGGTACCCCAA
CATTTTCGCCCACCACGCCATTTACAACCGGACAGGCTTCCACAAACTCA
TGCCTAGGAACACCAAATATGTAGCGATCTTAAGAGAACCGCTAGCAAGA
CTGCGCTCTTCCTTCAAATACTTCAAGATGGACAGGTATTTCATAGGCTT
AAGGAAAGCGGCTGGCTCGAAACCACCGGTGCTGACATATCTTGATGATC
CAAAGAAATGGGACAGTCTCTATCGCCCTTCTACAAGACTGGATTTCGTT
GATCACATCTGTAACAGAAACTGTATGTCAAGGGATCTCGGCCTTCAGAA
AAAGGATTACGAAAACAAGACCGCCATTGAAAATTTTATTCGAAACATTG
AGAGAGACTTCTCATTGGTCATGATCCTGGAACAGTTTGACCAATCAATG
GTTCTCCTTCGACGGCGCATGTGCTGGGAGGTTAAGGACATTATTTACGA
TAGCATCAAACCGTCCAAAAAGTCGAATTATGGAAAGACCCAATATAACA
TCACTGACAGGATGCGACAAAATTTCATAGAAAATAATTATGCTGATTAT
TTGTTGTACAATCACTTCAACGAAGCAATAACGAGGCAAATAACCGAAGA
AGGGAGTGGATTTCAAAAGGAGTTACAAAACTATAAAAAGATGAATACCG
TAGTGAGTAAAATTTGCCATTCTAGAGTAAGGTATCCGAGTTATACTGTC
CGATCAAGCAAAGGTCCAGTTTTTCGTGTTGATAAACTATTTTGTGACCA
AATAAAGACAGAACGACAACGCTGGGATCCCGTATTACGAAGAGATTACA
CACGTTCTATATTCAATAGATTTTGAAGATAGTAGTGT Coding sequence (CDS) from alignment at Sc0000235:301335..304222- >transcript:BL96455_cuf2 ID=transcript:BL96455_cuf2|Name=transcript:BL96455_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=3897bp|location=Sequence derived from alignment at Sc0000235:301335..304222- (Branchiostoma lanceolatum)
ATGGCGCGGACCGCAGTCGCTGGAGAAAGGCAGCAACATCAGAGGAAAAA
TATCAAAGAACATCCACCATCCATTCTAACATGTCTGTGGACACGGCAGA
GCCTTTGGAGATTTTTCCTGTTTGTGACGTCGGCGCTTGTCCTCGCTTTG
CTGGTGTTGTTGCACTTCGAGGAAAACCTGCCAACGTCTCGTGAAACTCT
TCCCAGGCCAAAAGGGTGGTTACCGCCACAGCCAACTAACAGCTCCACAC
GTGAAGCAGAGCGGACGGCGACGCCCTGCCAACCCCAGACCAACGTGGCG
TTTATGAAGGTGCACAAGTGCGGGTCCACCACCGTGCAGAAGGTCTTCCT
CAGGTTCGGACACAGACATCTCCTGACTGTCGCACTGCCCCGGGAACGAG
ATCGGCCCTCCATCGGTACTGCTGGCGTCATCACGGAACGAGACTACCTG
GACCTACCGAAGGGGTACCCCAACATTTTCGCCCACCACGCCATTTACAA
CCGGACAGGCTTCCACAAACTCATGCCTAGGAACACCAAATATGTAGCGA
TCTTAAGAGAACCGCTAGCAAGACTGCGCTCTTCCTTCAAATACTTCAAG
ATGGACAGGTATTTCATAGGCTTAAGGAAAGCGGCTGGCTCGAAACCACC
GGTGCTGACATATCTTGATGATCCAAAGAAATGGGACAGTCTCTATCGCC
CTTCTACAAGACTGGATTTCGTTGATCACATCTGTAACAGAAACTGTATG
TCAAGGGATCTCGGCCTTCAGAAAAAGGATTACGAAAACAAGACCGCCAT
TGAAAATTTTATTCGAAACATTGAGAGAGACTTCTCATTGGTCATGATCC
TGGAACAGTTTGACCAATCAATGGTTCTCCTTCGACGGCGCATGTGCTGG
GAGGTTAAGGACATTATTTACGATAGCATCAAACCGTCCAAAAAGTCGAA
TTATGGAAAGACCCAATATAACATCACTGACAGGATGCGACAAAATTTCA
TAGAAAATAATTATGCTGATTATTTGTTGTACAATCACTTCAACGAAGCA
ATAACGAGGCAAATAACCGAAGAAGGGAGTGGATTTCAAAAGGAGTTACA
AAACTATAAAAAGATGAATACCGTAGTGAGTAAAATTTGCCATTCTAGAG
TAAGGTATCCGAGTTATACTGTCCGATCAAGCAAAGGTCCAGTTTTTCGT
GTTGATAAACTATTTTGTGACCAAATAAAGACAGAACGACAACGCTGGGA
TCCCGTATTACGAAGAGATTACACACGTTCTATATTCAATAGATTTTGAA
TGGCGCGGACCGCAGTCGCTGGAGAAAGGCAGCAACATCAGAGGAAAAAT
ATCAAAGAACATCCACCATCCATTCTAACATGTCTGTGGACACGGCAGAG
CCTTTGGAGATTTTTCCTGTTTGTGACGTCGGCGCTTGTCCTCGCTTTGC
TGGTGTTGTTGCACTTCGAGGAAAACCTGCCAACGTCTCGTGAAACTCTT
CCCAGGCCAAAAGGGTGGTTACCGCCACAGCCAACTAACAGCTCCACACG
TGAAGCAGAGCGGACGGCGACGCCCTGCCAACCCCAGACCAACGTGGCGT
TTATGAAGGTGCACAAGTGCGGGTCCACCACCGTGCAGAAGGTCTTCCTC
AGGTTCGGACACAGACATCTCCTGACTGTCGCACTGCCCCGGGAACGAGA
TCGGCCCTCCATCGGTACTGCTGGCGTCATCACGGAACGAGACTACCTGG
ACCTACCGAAGGGGTACCCCAACATTTTCGCCCACCACGCCATTTACAAC
CGGACAGGCTTCCACAAACTCATGCCTAGGAACACCAAATATGTAGCGAT
CTTAAGAGAACCGCTAGCAAGACTGCGCTCTTCCTTCAAATACTTCAAGA
TGGACAGGTATTTCATAGGCTTAAGGAAAGCGGCTGGCTCGAAACCACCG
GTGCTGACATATCTTGATGATCCAAAGAAATGGGACAGTCTCTATCGCCC
TTCTACAAGACTGGATTTCGTTGATCACATCTGTAACAGAAACTGTATGT
CAAGGGATCTCGGCCTTCAGAAAAAGGATTACGAAAACAAGACCGCCATT
GAAAATTTTATTCGAAACATTGAGAGAGACTTCTCATTGGTCATGATCCT
GGAACAGTTTGACCAATCAATGGTTCTCCTTCGACGGCGCATGTGCTGGG
AGGTTAAGGACATTATTTACGATAGCATCAAACCGTCCAAAAAGTCGAAT
TATGGAAAGACCCAATATAACATCACTGACAGGATGCGACAAAATTTCAT
AGAAAATAATTATGCTGATTATTTGTTGTACAATCACTTCAACGAAGCAA
TAACGAGGCAAATAACCGAAGAAGGGAGTGGATTTCAAAAGGAGTTACAA
AACTATAAAAAGATGAATACCGTAGTGAGTAAAATTTGCCATTCTAGAGT
AAGGTATCCGAGTTATACTGTCCGATCAAGCAAAGGTCCAGTTTTTCGTG
TTGATAAACTATTTTGTGACCAAATAAAGACAGAACGACAACGCTGGGAT
CCCGTATTACGAAGAGATTACACACGTTCTATATTCAATAGATTTTGAAT
GGCGCGGACCGCAGTCGCTGGAGAAAGGCAGCAACATCAGAGGAAAAATA
TCAAAGAACATCCACCATCCATTCTAACATGTCTGTGGACACGGCAGAGC
CTTTGGAGATTTTTCCTGTTTGTGACGTCGGCGCTTGTCCTCGCTTTGCT
GGTGTTGTTGCACTTCGAGGAAAACCTGCCAACGTCTCGTGAAACTCTTC
CCAGGCCAAAAGGGTGGTTACCGCCACAGCCAACTAACAGCTCCACACGT
GAAGCAGAGCGGACGGCGACGCCCTGCCAACCCCAGACCAACGTGGCGTT
TATGAAGGTGCACAAGTGCGGGTCCACCACCGTGCAGAAGGTCTTCCTCA
GGTTCGGACACAGACATCTCCTGACTGTCGCACTGCCCCGGGAACGAGAT
CGGCCCTCCATCGGTACTGCTGGCGTCATCACGGAACGAGACTACCTGGA
CCTACCGAAGGGGTACCCCAACATTTTCGCCCACCACGCCATTTACAACC
GGACAGGCTTCCACAAACTCATGCCTAGGAACACCAAATATGTAGCGATC
TTAAGAGAACCGCTAGCAAGACTGCGCTCTTCCTTCAAATACTTCAAGAT
GGACAGGTATTTCATAGGCTTAAGGAAAGCGGCTGGCTCGAAACCACCGG
TGCTGACATATCTTGATGATCCAAAGAAATGGGACAGTCTCTATCGCCCT
TCTACAAGACTGGATTTCGTTGATCACATCTGTAACAGAAACTGTATGTC
AAGGGATCTCGGCCTTCAGAAAAAGGATTACGAAAACAAGACCGCCATTG
AAAATTTTATTCGAAACATTGAGAGAGACTTCTCATTGGTCATGATCCTG
GAACAGTTTGACCAATCAATGGTTCTCCTTCGACGGCGCATGTGCTGGGA
GGTTAAGGACATTATTTACGATAGCATCAAACCGTCCAAAAAGTCGAATT
ATGGAAAGACCCAATATAACATCACTGACAGGATGCGACAAAATTTCATA
GAAAATAATTATGCTGATTATTTGTTGTACAATCACTTCAACGAAGCAAT
AACGAGGCAAATAACCGAAGAAGGGAGTGGATTTCAAAAGGAGTTACAAA
ACTATAAAAAGATGAATACCGTAGTGAGTAAAATTTGCCATTCTAGAGTA
AGGTATCCGAGTTATACTGTCCGATCAAGCAAAGGTCCAGTTTTTCGTGT
TGATAAACTATTTTGTGACCAAATAAAGACAGAACGACAACGCTGGGATC
CCGTATTACGAAGAGATTACACACGTTCTATATTCAATAGATTTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000235 | genome | Sc0000235:301335..304222 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96455_cuf2 |
| Biotype | protein_coding |
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