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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96368_cuf5 >transcript:BL96368_cuf5-protein ID=transcript:BL96368_cuf5-protein|Name=transcript:BL96368_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=301bp
MDGKFVFVLFALQIWATIFTAARPARRSVNDVTSPTTPGHETHRHRPING
LQTAGMPVKGPSTPFATTRPHKSTQPDKTTPIIPATSVSGFSNSIGPSTK
LYTTLEVSTLPFTDNVTTMTPRITSPKGNCSNATECRPNTGKRQGNYTTA
LVVTAVTSVVAGIVLATGAWHLRRRLLLARERKRLKRLEERRSKIVYNSN
PAYHRSSLLGNDKLYSTILSLSDYSPAPRTKLPNGNAKKDEGNKVSTSFT
NPVDILRKGDRRSDVKGRSGNPLXKSTEGFEAVQGGREEQQSDNCRSYVT
R Run BLAST on NCBI mRNA from alignment at Sc0000049:477452..482532+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96368_cuf5 ID=transcript:BL96368_cuf5|Name=transcript:BL96368_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=5081bp|location=Sequence derived from alignment at Sc0000049:477452..482532+ (Branchiostoma lanceolatum)
GTGTCATTGATTTATTCCGTAAACAAGTTTTCACAAGTGAGTAACCCGAG
CGCAATGAGGAAGTACCAGACTAAACCGCCGTGAATCCTGCGTGAAAAGA
ACCAGCAGAACATTTTCGAGAAGAATTTTTATTTAGAACGGACGTGTGAG
AATAAGACCATGGACGGAAAGTTCGTTTTTGTGCTGTTTGCTCTACAGAT
TTGGGGTAAGTAAAGCAAATAGTCCCTATTCTTTCTGTGAGGCCTTGGTA
ATTGTTCAACAGCACTAGACAGAGGATTTGTACGTTCCCCTGGTCTTCAG
ATAATCTGGTAGAATTTTACGAATTAATCAGAGACGAGTTATTTCCTTCT
ATACTTCGAGTGTATGAGAAGCTATAGCTATTAGGACGTTTATAAAGTAC
ATATGTGCGATTAAGAACATAAACCCGGGTAGAACGGGGTCGTCCGATGA
ATATAAATATACATGATGTATATATCATATATATTCTTCGGACGACATAT
ATAACCTAGATAATGAAAGTAAAAATTAAGTAATGTGCAATAGTATTCAG
TCATTTCAGTGATGTGCATCAGAGGTACCTACAACTGCCATGTGAATGTG
ATAATAACAGGAATAATCACAATCGATTATGAAAACGTTTTGTTTCGAAC
AAATACAGTTGGGTTAAGGTTATAGCCATGATTCGTGTGTTAGTTTTAGA
AGAGAGCAATGGAGATCATCTGGGTAGGTAGGAAATATGTCCCTGTTGCT
CGACTGGTAGCAGCTTCACAGATCATGAGCTCCTGGTTCCATATAGTTGG
CAACTGGGAGACCCCGGTTCAAAAAATTATGAGAAGGCATCTCGGTTGGG
GCTGCACTCGTCTTTCGGAAGGGACAAAAAATGGGGGTCCTTTGTTCGAG
GAGGCGTTTTTAGCATGTTTAAGGGGAAGGGCTAGCAGCCCCTCCCAGTG
AAAATATACCCTACAGAAACAGCAAGGAACATTGCAGACATATGTGCCAC
TAGTCACTGTAAGGCGAACAACAACAACACTGTCAGGTTAAGTACTGATA
TCTATAATTGAAATGATCAAGTTTTCAAATCTGTGCAGAAGAGGTTCACG
TCGGTAGACATAGTTAGACTTTAGGGCACAGTGAAATAGGATGTGAAACA
CTTTCGCATCGACATCCCGCAGTTGAAAAAAGGCATATTTTGATTTATGT
TTTAAGGGAAACTCCGTTTCTTTGACATAAACTTTGAAGCTCAAAATCAG
AAATGATTAGACAAAGAAAGGTGGAAAATGTGCTAATGAAAACACTGCAT
GTGTTTCAAAATACAGTGGCCTTGGTACGCAGGCAACTGTCCATATGTCA
GGCATTCCGGTAGCCTACATTTTAGCCATGTTGATAAAACGGACTTTTAA
TTTGGTATATTTGGTTGGCAATGTTTTTTCATCTTTTATTTCGGTGTCGC
GAGACCTGAAAGGGCTTAGTATGATTGATAGTTCATAGTATTGCATCGAC
ACCCCGGATGTGTGCTCAACAACTGACACCTTTCAGCTACAGTACGTTGT
TCTGTCAAAACGTCCTGTCAAAATGTCCCTAAAACAAGCATAGACATTCA
ATTATAAACGGTGTTGATCCACATGAATGCTGTGTATACGTACGGTTTAG
AAATAGATTTTGTTATCTACCAAGATTTCGAAGTGAATATTTTGGTAAAA
CTCAGATTTATACAGATTATTATTAGTAGTAAAATGTGAATCATGGTTTA
GAAAGAAGTTTTGTTGTTTACCAAGAGCTCGACGTGAATATTTTGGTGAA
ACTCAGATTTATTTAGTAGTTTGATGTAAATCTAAGCTGTTTTCAAGAGT
GTGAGATCAGTTCAGTGTCACAAAGATGTTGAAAACTGGGCCAGAAGGCT
TAAGGTCGAAAATGGTGCCACATAGTCCATGTCTTATTTAACTTCGCGGT
GGCAGACTCCGTGGAACGTGCCTTGGAAGACACATCTGGTGTTGACGTCT
TAAAAGACTCATTAGGAACTCAAGAAACGCGTACTTTGCAAACCCGAGAC
GTGGTCATCCCGGTCGTATATTTGCTTATGTCTCTCGAGCATAGCATAGC
TTTTACGGTAGAGGAGGGTTGTGTGGTTGTTGTTGTCGTCGTACAAGTTT
TACCTCTACGAAGAGGGAGGTATTGTTTTAGGTGTGTCTGTCCGTGTGCT
CGTCTGTGTGTCTGTCGGTGTTTCCGCATCTTTGTGGTCAGCATAATCTA
AGAACCTCTGGATGGATGGTATTTGGCATGAGGTAGGTCTTGAGAAGACG
ACGGTCAGGGTCAGTTTTGCGCAACCTGGCAGCTTTCCCTGGTACTGCAG
TTTTTATATCTTTTGCCCTGGACAAGCTATATAGATAGCTGTCTATCTCA
GGAAGAAGTGGTGTAGGTTTGATCCCCCTAACAGATTGTTCTAAACAGTT
TGTTGCTTGTGTAACTAGTATTGTCAACACTGATACCTTTAGCTTTGTAA
GCTATTTAGACTTGCTTTCGTACATTTTTACATATTTTACAAGTTGTTGC
CAATCGTTAAAGAATACTATGCGTGGTAAACCATCCCCGTGATACTTAGT
AGTTGATATCCTTTTTGATACCCATATGGTAATGTAAACCTTTGATATCC
CAAATTATTATACATTTGTATAAGCGTTTGATATCCCCAATGATAAAATT
ATTTTTCTCACTCATGGTAACAGTTTACGAAGATTAATTGTTCTCTTCTG
TTTCTGTTAGCAACGATCTTCACAGCGGCAAGGCCAGCACGAAGATCCGT
CAATGACGTCACATCTCCAACAACTCCCGGTCACGAGACGCACAGACATC
GTCCAATCAACGGCCTCCAAACAGCCGGCATGCCAGTAAAAGGGCCCTCG
ACACCTTTTGCAACAACTCGGCCTCACAAGTCAACTCAGCCTGACAAAAC
AACTCCCATCATACCTGCAACTTCCGTTTCCGGTTTCAGCAATTCGATTG
GGCCATCGACTAAACTCTACACGACATTAGAAGTATCCACTTTGCCTTTC
ACTGACAATGTGACCACCATGACACCTCGGATTACGTCCCCAAAGGGCAA
CTGCAGCAACGCAACAGAATGTAGACCAAACACTGGCAAACGTAAGTTGA
AATTACTTTTGCATCTAGTGGCTCCTGTGTGTTGTCTACATTTTCCACAC
TTCCATATTGTATTGTGTGCTCAATTTCACTTTTGCTTGATCATACAAAA
AAAGGCCGATTTAAAGAAAAAAAATTATAAAGGCTAGCTTAAAAGATAGA
AGGACAGGAAAAGGCCATTGCTTAGTAGAAGTGGGGCTAGGCTGGCCCGT
TGAATGGTTACGAGGCCAGTACCTATAGAAATGCTCCATTTTGAATGGCT
GCTGCTAGGTTGTATGCCGCTGTAAATGAAATCTAGTTGTTGAGTAGGGT
GTCCATGAGGACCACAAAATAGTGCTTTGCTGGTTGGGTAAGACAATTGG
TAACTCAGCAGGGGTCTTGAATATGTACAATTGGACTTGACTGTTTCAAT
GTGGCAGGTGGTTGCCTCTGCCAGGTGGTTGGCCGGCGAGGTTTGACTGT
AATTTCATTTTTTTCTTTCCAGGTCAGGGTAACTACACAACAGCGTTGGT
GGTGACTGCCGTAACGTCAGTCGTAGCGGGGATCGTGTTAGCTACCGGCG
CCTGGCATCTCCGGCGACGCCTGTTGCTCGCCAGGGAAAGGAAACGCCTC
AAGCGACTAGAAGAAAGAAGAAGCAAGATCGTTTACAACAGTAACCCTGC
CTACCACAGGAGTTCCTTACTGGGCAACGACAAGTTGTACTCCACCATAC
TAAGTCTCAGTGACTATTCGCCCGCACCGCGTACCAAACTGCCAAATGGA
AACGCCAAGAAAGATGAGGGAAACAAAGTCTCTACAAGTTTTACAAATCC
TGTGGACATTTTGAGAAAAGGTGATAGACGATCCGACGTAAAAGGGCGTT
CTGGAAACCCACTGNGGAAATCCACTGAAGGTTTTGAAGCTGTACAAGGA
GGGCGCGAGGAACAGCAGTCAGACAACTGTCGTAGTTACGTAACACGTTA
AATGAAAGTCTGAAATCTGATGTATGAAGAACACGATTACATTAAAACTC
CATAAAGAACTCATGTCCATGATTACAGAGCAGATTTCGACTGTGATTTG
AGTAATGTTGTATACTGAGGTATCCTCAACATTCTTTGCTTCATGAATAA
TCGTAATGTTTACGCCTATGTCTTTGCTGTGAACAACATGAAATGAGTTT
TTCATATTTGCCAGTTGTAGATATTGAATGTATTTGACATAATGTACGAA
AATTGACTCATTCCGTATATATACACGTTATATGTTTTTTATCTATAATC
TATAGATGTAGACAAATGGTATTTTATATTACTGAAGAAAAATGTATTTT
GGTCAGTAATGTTGCACTTGATTCGAAGAAATAGACTTTGACAATGTAAA
GTTCAGATGCATACGCCAAATGATGATTCTTCACAAACTCCCTACAGCAG
TTAAATGAAAGTCTGAAATCTGATATATGAAGAATACGATTACATTAAAA
CTCCATAAAGAACTCATGTCCATACATTAAAAATGTGCAGTTTATTACAA
GCCTGTACTTTCTCTGTACATAGGGAATATGGCCGGTATCGATATGATTT
NAATATGGTATCGATATGATTTACTTTCCTGTGGTTCATTTTGAACCTTC
AATGAAAGTCAGGTATGACAGTTGTAAAGAAAGAGCTGTTTGTCATATGT
GATTACGTACAATATAGGAAAACTGGGTGCAACAATTCGATTTGTTCTCT
AAATTCTTATATTGTTTTTACATAATTATGAAAATACTGTTGATGCCATA
AATGCACAATATACAGTGTGGTTTTAATTGTCGTGCTACGTCTAATCCTA
CGTCAAAATAAAAGGACAACTCTACGTGCTATTGATAGAATCTTTCTTTG
TGTGTGACATCAAATACTCACCCACCCCAATTTTACACATATACTTTTAC
ATGCATATTTTCATATCACTAGTAATAAAGG Coding sequence (CDS) from alignment at Sc0000049:477452..482532+ >transcript:BL96368_cuf5 ID=transcript:BL96368_cuf5|Name=transcript:BL96368_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=2718bp|location=Sequence derived from alignment at Sc0000049:477452..482532+ (Branchiostoma lanceolatum)
ATGGACGGAAAGTTCGTTTTTGTGCTGTTTGCTCTACAGATTTGGGCAAC
GATCTTCACAGCGGCAAGGCCAGCACGAAGATCCGTCAATGACGTCACAT
CTCCAACAACTCCCGGTCACGAGACGCACAGACATCGTCCAATCAACGGC
CTCCAAACAGCCGGCATGCCAGTAAAAGGGCCCTCGACACCTTTTGCAAC
AACTCGGCCTCACAAGTCAACTCAGCCTGACAAAACAACTCCCATCATAC
CTGCAACTTCCGTTTCCGGTTTCAGCAATTCGATTGGGCCATCGACTAAA
CTCTACACGACATTAGAAGTATCCACTTTGCCTTTCACTGACAATGTGAC
CACCATGACACCTCGGATTACGTCCCCAAAGGGCAACTGCAGCAACGCAA
CAGAATGTAGACCAAACACTGGCAAACGTCAGGGTAACTACACAACAGCG
TTGGTGGTGACTGCCGTAACGTCAGTCGTAGCGGGGATCGTGTTAGCTAC
CGGCGCCTGGCATCTCCGGCGACGCCTGTTGCTCGCCAGGGAAAGGAAAC
GCCTCAAGCGACTAGAAGAAAGAAGAAGCAAGATCGTTTACAACAGTAAC
CCTGCCTACCACAGGAGTTCCTTACTGGGCAACGACAAGTTGTACTCCAC
CATACTAAGTCTCAGTGACTATTCGCCCGCACCGCGTACCAAACTGCCAA
ATGGAAACGCCAAGAAAGATGAGGGAAACAAAGTCTCTACAAGTTTTACA
AATCCTGTGGACATTTTGAGAAAAGGTGATAGACGATCCGACGTAAAAGG
GCGTTCTGGAAACCCACTGNGGAAATCCACTGAAGGTTTTGAAGCTGTAC
AAGGAGGGCGCGAGGAACAGCAGTCAGACAACTGTCGTAGTTACGTAACA
CGTTAAATGGACGGAAAGTTCGTTTTTGTGCTGTTTGCTCTACAGATTTG
GGCAACGATCTTCACAGCGGCAAGGCCAGCACGAAGATCCGTCAATGACG
TCACATCTCCAACAACTCCCGGTCACGAGACGCACAGACATCGTCCAATC
AACGGCCTCCAAACAGCCGGCATGCCAGTAAAAGGGCCCTCGACACCTTT
TGCAACAACTCGGCCTCACAAGTCAACTCAGCCTGACAAAACAACTCCCA
TCATACCTGCAACTTCCGTTTCCGGTTTCAGCAATTCGATTGGGCCATCG
ACTAAACTCTACACGACATTAGAAGTATCCACTTTGCCTTTCACTGACAA
TGTGACCACCATGACACCTCGGATTACGTCCCCAAAGGGCAACTGCAGCA
ACGCAACAGAATGTAGACCAAACACTGGCAAACGTCAGGGTAACTACACA
ACAGCGTTGGTGGTGACTGCCGTAACGTCAGTCGTAGCGGGGATCGTGTT
AGCTACCGGCGCCTGGCATCTCCGGCGACGCCTGTTGCTCGCCAGGGAAA
GGAAACGCCTCAAGCGACTAGAAGAAAGAAGAAGCAAGATCGTTTACAAC
AGTAACCCTGCCTACCACAGGAGTTCCTTACTGGGCAACGACAAGTTGTA
CTCCACCATACTAAGTCTCAGTGACTATTCGCCCGCACCGCGTACCAAAC
TGCCAAATGGAAACGCCAAGAAAGATGAGGGAAACAAAGTCTCTACAAGT
TTTACAAATCCTGTGGACATTTTGAGAAAAGGTGATAGACGATCCGACGT
AAAAGGGCGTTCTGGAAACCCACTGNGGAAATCCACTGAAGGTTTTGAAG
CTGTACAAGGAGGGCGCGAGGAACAGCAGTCAGACAACTGTCGTAGTTAC
GTAACACGTTAAATGGACGGAAAGTTCGTTTTTGTGCTGTTTGCTCTACA
GATTTGGGCAACGATCTTCACAGCGGCAAGGCCAGCACGAAGATCCGTCA
ATGACGTCACATCTCCAACAACTCCCGGTCACGAGACGCACAGACATCGT
CCAATCAACGGCCTCCAAACAGCCGGCATGCCAGTAAAAGGGCCCTCGAC
ACCTTTTGCAACAACTCGGCCTCACAAGTCAACTCAGCCTGACAAAACAA
CTCCCATCATACCTGCAACTTCCGTTTCCGGTTTCAGCAATTCGATTGGG
CCATCGACTAAACTCTACACGACATTAGAAGTATCCACTTTGCCTTTCAC
TGACAATGTGACCACCATGACACCTCGGATTACGTCCCCAAAGGGCAACT
GCAGCAACGCAACAGAATGTAGACCAAACACTGGCAAACGTCAGGGTAAC
TACACAACAGCGTTGGTGGTGACTGCCGTAACGTCAGTCGTAGCGGGGAT
CGTGTTAGCTACCGGCGCCTGGCATCTCCGGCGACGCCTGTTGCTCGCCA
GGGAAAGGAAACGCCTCAAGCGACTAGAAGAAAGAAGAAGCAAGATCGTT
TACAACAGTAACCCTGCCTACCACAGGAGTTCCTTACTGGGCAACGACAA
GTTGTACTCCACCATACTAAGTCTCAGTGACTATTCGCCCGCACCGCGTA
CCAAACTGCCAAATGGAAACGCCAAGAAAGATGAGGGAAACAAAGTCTCT
ACAAGTTTTACAAATCCTGTGGACATTTTGAGAAAAGGTGATAGACGATC
CGACGTAAAAGGGCGTTCTGGAAACCCACTGNGGAAATCCACTGAAGGTT
TTGAAGCTGTACAAGGAGGGCGCGAGGAACAGCAGTCAGACAACTGTCGT
AGTTACGTAACACGTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000049 | genome | Sc0000049:477452..482532 + |
Properties
| Property Name | Value |
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| Transcript id | BL96368_cuf5 |
| Biotype | protein_coding |
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