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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96364_cuf11 >transcript:BL96364_cuf11-protein ID=transcript:BL96364_cuf11-protein|Name=transcript:BL96364_cuf11|organism=Branchiostoma lanceolatum|type=polypeptide|length=166bp
SVWLPLVTQCSVLLLGYPPFCSENPQETYRKVMNWKEMLIFPPEVPISFN
SRNLIERLCTDMDVRLGKQGIEELRENQFFKAVDWEHIRERPAPFPVTVK
SFDDTSNFDEFPEIELQPPTPTSKEGEENKYKDWVFLNYTFKRFDALTQR
GVPRQPTRNALPKEKC Run BLAST on NCBI mRNA from alignment at Sc0000203:447962..454076- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96364_cuf11 ID=transcript:BL96364_cuf11|Name=transcript:BL96364_cuf11|organism=Branchiostoma lanceolatum|type=mRNA|length=6115bp|location=Sequence derived from alignment at Sc0000203:447962..454076- (Branchiostoma lanceolatum)
GTTCTGTTTGGTTGCCACTGGTTACTCAGTGTTCCGTGTTGTTGCTAGGT
TACCCGCCATTCTGTTCTGAGAACCCCCAGGAGACCTACAGGAAGGTGAT
GAACTGGAAGGAGATGCTGATCTTCCCGCCCGAGGTGCCGATCTCCTTCA
ACTCACGCAACCTCATCGAAAGGTCAGAACCTTTCCCCTTACTCTGTGGT
CATCTGCTGCTGTTGTTGCCCTGTGTTGCAGGTTGTGTAATGTTGCCCTG
TGTTGCAGGTTGTGTAATGTTGCCCTGTGTTGCAGGTTGTGTAATGTTGC
CCTGTGTTGCAGGTTGTGTAATGTTGCCCTGTGTTGCAGGTTGTGTAATG
TTGCCCTGTGTTGCAGGTTGTGTAATGTTGCCCTGTGTTGCAGGTTGTGT
AATGTTGCCCTGTGTTGCAGGTTGTGTAATGTTGCCCTGTGTTGCAGGTT
GTGTAATGTTGCCCTGTGTTGCAGGTTGTGTACCGACATGGACGTGCGAC
TGGGGAAGCAGGGCATCGAGGAGCTGAGGGAAAATCAGTTTTTCAAGGCT
GTTGACTGGGAGCACATAAGGTGGGACACTTAAACACCCCTTACACACCC
CTCACACACACCTCACACACCCCTCACACACCCCTCACACACACCTTACA
CACACCTTACACACCCCTTACACACACCTTACATACCCCTTACACACCCC
TCACACACCNTTGTTTAATGTTGCCCTGTGTTGCAGGTTGTGTAATGTTG
CCCTGTGTTGCAGGTTGTGTAATGTTGCCCTGTGTTGCAGGTTGTGTAAT
GTTGCCCTGTGTTGCAGGTTGTGTAATGTTGCCCTGTGTTGCAGGTTGTG
TAATGTTGCCCTGTGTTGCAGGTTGTGTAATGTTGCCCTGTGTTGCAGGT
TGTGTAATGTTGCCCTGTGTTGCAGGTTGTGTAATGTTGCCCTGTGTTGC
AGGTTGTGTAATGTTGCCCTGTGTTGCAGGTTGTGTAATGTTGCCCTGTG
TTGCAGGTTGTGTAATGTTGCCCTGTGTTGCAGGTTGTGTAATGTTGCCC
TGTGTTGCAGGTTGTGTAATGTTGCCCTGTGTTGCAGGTTGTGTAATGTT
GCCCTGTGTTGCAGGTTGTGTAATGTTGCCCTGTGTTGCAGGTTGTGCAC
CGACATGGACGTGCGACTGGGGAAGCAGGGCATCGAGGAGCTGAGGGAAA
ATCAGTTTTTCAAGGCTGTTGACTGGGAGCACATAAGGTGGGACACTTAA
ACACCCCTTACACACCCCTCACACACACCTCACACACCCCTCACACACCC
CTCACACACACCTTACACACACCTTACACACCCCTTACACACACCTTACA
TACCCCTTACACACCCCTCACACACCCCTCACACACACCTTACACACACC
TTACACACCCCTTACACACACCTTACACACACCTTACACACACCTTACAG
TATATATCTGACTCACACACCCCTTACATTTCAAACACTCCTTACATCTC
ACACACCCCTTACATCTCAAACACTCCTTACATCTCACACACCCCTTACA
TCTCACACACCCCTTACATCCCACACACCCCTTATATATATATATACATC
TCACACACCCGTTACAGGGATCGAAATACTTTTTTGGGGTTACTTGCAAA
ACTGCAAGTTGGCAAAAAGTTAACTTGCAATTTGAAAATTTAATTTGCAA
TATTGAAGTCGGTATGTAACTGATTTTGCTGTACATACATACATACACAC
ACCATGACACAGTAAGAAGTTGATTGATAGCGATGTTCTACACCCCCCCC
ATGCAGAGAGCGCCCAGCGCCGTTTCCCGTCACAGTGAAGAGCTTTGACG
ACACGTCCAACTTCGACGAGTTCCCCGAGATTGAGCTGCAGCCGCGTGAG
TCTCGCCTCAGGACGCACAGACAGTCTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGCTTGTCTCTGTGTGTGTCTGTGTGCATTTT
TTGTGTGTGTGTGTGTGTGTGTGTGCGCATTTGTGTGGGTGTGTGCGCAC
ATTTGTGTTTGTGTGTTGTATGTACAAGTTACAGATGAAAGTTCTTCTGT
GTTGGTAGCTTACATAAAGGCAGCTGAACTTTGTTTCCACACGTCTAATC
GGGACGGCGGGCGGAATCGGGACGACGGGCGGAATCCGGACGGCGGGCGG
AATCGGGACGGCGGGCGGTACAGACTTGTTTTGCTAGTTACTGATGTGTC
TATTAGGTCATGTTACCTAAGTGATGTTTCCATAAGGTCATGTGACCTAA
TCCTGAGGCAGGCTGTCAGCTGAACATTTCCGGCATCAGTTGTGTTTAAG
TCAATGTTCAGTATCTTAGAGTGGAACTCTAAGAGGCGTACAGTGAATAT
CTTAAAAACATGCTTGGAGGTATGAATGGATATGCAGAAGTTAGCTGTGC
CAGGCTGGTTGATGTAACATACCCATCTGCCCGTGCCTGTGAAGCTGGTG
TGTTAGGCAGAAGGGTGATCATACTGGGTATACAGTACAGATGCATTCAC
TAACTCTGTTTTTTCCCCCACACCGATAAATTATAGTAACCCTGCTTATT
TTCTATAATGATGTATTCTTTTTATTTATTTATTTATTCATTTATTAGTA
ATCTTTTGTATTCCCTGCACAGCAACACCAACCTCCAAAGAAGGGGAGGA
GAACAAGTACAAGGACTGGGTTTTCCTGAACTACACTTTCAAAAGATTCG
ACGCCTTGACGCAGCGCGGCGTTCCCCGACAGCCGACGCGCAACGCTCTG
CCCAAGGAGAAGTGCTAATGTCCAACCTGCTAATGTCCACCCTGCTAATG
TCCACCCTGCTAATGTCCAACCTGCTGATGTCCACCCTGCTAATGTCCAC
CACTGTCCAGTGAGAAGTGCTAGCATCTGACCTTGCCCACCACTGTCCAT
GTCAGCCGTATCTATAGAAATTCGCAGTGCATCGCTGAAGGAAACTTGCT
GTGCCCATCCTTTAAGCCACACCTTATTAATTTGTTGGTTCTGGAATTTT
AGAGAAATGTGTCTAGGCACCCTCAGTTTTATGGTGTGGACGTAGACAGA
TGCAAGCTGCCCCTGCCATGTGTAAACAGTGTTTTCCTGCTGAAATGCTA
GTTTGCACTGTCCAGAAATTCACCAGGGAATGGAGCTGGAGTGGCCTTAT
TGTATATGTAGGAAAGTTACCTTGCAGGCTGTGAAGATTAGTTTATATTA
AACTTAGAGTTTATAGATGTTGTAAATGCTGACTGACTCCAGGGCTTTAG
CCGTTTTGGTAAGAGATTTTACTGTATTTCTGTTCTGATCACTTCCAAGT
CCTGCAGGGATGCCTGGGGGGGGGGGGACTCACATTCGTAGAAGTGGCTG
AAGTAGAAACACATGTTCACACTAGACTCTGAAATTCATGTTCACTCTGG
GCTTCAGTAGAATGTGACACCGGGCTCATTCCAGGACCCGTCCGTCTGTC
CTGGGATGGAAATTCGCAGGCGGGACTTGTTGTCCTGGTAACAACAGTAA
ACAAACAGGTGAGACAGCAAGCGGGTTGTATTGCCTAGGTAACAACAGTA
AACATTGAATCTCCATTGGAACCAGTCGGGGAAGTTGTGGAAACTTTTAC
CAGGACAGAGTTCCAACAGAGACGGAGCCCGCACATCCACTGTTTTGGGT
GAAAGATGCACCAAAATTGGATTTATATTCTGAAGAGGACATCTGCTCCC
TTTGTGTCATGTGTTTCCCTGGTAACAACAGTAAACAACAAACGAGTGAG
ACAGGAGGCAGGGCATGTTGCTCTGGAAACGATAGTAAACAACAAGCTCG
TAACGGGTACCCCAACAATCTGCCCTGCATGGGTGCAGCCACCGCAATCC
TGCCCTGCCTGTCCAACATTGCATCAGAGCCAAACCAGACGCCCAATTCT
ACAAGTGTCCTATTGCACCATTCCCCTTACATTCTGGCAGGCTGCCACTC
TGCAATTATATTCACCTGGATTTTTCCCCAAAAATCGTAACTTCATGACA
TGGGATAGATGCAGTGTAGGATTGTATCAAATACTTAAAATTACAGATTT
AACATCAAAATTAACAACATGGGCTCCCAAATAAGGAGTGGGACTGGAGA
GAATTTAAAACTGGAGACAGCCCTGCACTTGACACTGGGCTTTAGCAGAA
TGTTACTCACACTACACTTTGGGCTTAGCAGAATGTTATTCACACTACAC
TGGGCTTTAGCAGAATGTTATTCACACTACACTTTGGGCTTAAGCAGAAT
GTTATTCACACATGACACTAGCTGTCCACTGTTAACGTTGAGACTAGATG
CAGACTTGTACATTTTGGGAAAAGAAGCTTGACTGTAAATATGACACAGC
TGAAACATAGTAAGCAATATTCTTAGGGGAGTTTCTGTAATGTGAGGGGA
GATACTATAATGTTAGGGGCGTTAATTACTGTAATGCTGGGGGCGCTACT
ATAATGTTAGGGGCGTTCATTACTGTAATGCTAGGGTAGTGTCTGTAATG
TTAGGGGCGTTACCGTAAAGCTGGGGGAGTTGAGGAGTTTCTGTAATGTT
GGTGTTTCTGTGATATTAGCTGTACAAAGGAATATAGAAAACCTGTCATG
CAAGCCTCCCAGTTACTCTTGCTCTTCATGTACAGTAAATTAAATATGAT
TAGTCGATATCATTAACTTAGATTGTCCTGAACATTGTAATAGAGGACAT
TATTTTGCATATGTGTGGCTAGTTTCGAAAAATTCGAATATACAATCAGC
AAGGTTATGTCTACTGGGTGGTAGATGAACAACGACTGCTGGGATAGCAG
TATCTGGGAATAGGGTAAGCTGGTGTGTTCTGGGATAGAAGCATGCTGTA
ATTGAGGTAGAGAATGGTATATTTTGTTGCATTCCCCGCTGTCGCCTAGC
AACGGCTGAAAATAAACCACTAAGCTGTGAAAAAATACTAGGATGTACCA
AGTCTGTCAGTAGCTGGCTGTACAACCAGGGTTGCTAGCTGGGTGTGCAC
AACCAGGGTTGTTAACTGGGTGTGCACTACCAGAGTTGTTAGCTGGGTGT
GCACTACCAGGGTTGTTAGCTGGGTCTGCACACTACCAGGGCTGTTAGTT
GGGTGTGCACTACCCGGTTTGTTAGCTGGGTGTGCTGTGCACTTCCAGGG
TTGTTAATAGCTGGGTGTACACTACCAGGGTCGTTAACTGGGTGTGCACT
ACCAGGGTCGTTAACTGGGTGTGCACTACCAGGGTCGTTAACTGGGTGTG
CACTACCGGGGTTGTTAATAGCTGGGTGTACACTACCGGGGTTGTTAACT
GGGTGTGCACTACCGGGGTTGTTAATAGCCGGGTGTGCACTACCAGGGTT
GTTAACAGCTCATTATACATTGCAACATAGTTACTGGAGGGATGGACCAT
TTCTCCCATGTAGGGGTGTCCGACGTAGCTGTTCCCATGACTTATGATAC
TGTCAGCCTGTGCCTTTGCTTATTTTAAGGCTTGCTGCAAACATGTCCCC
CCATTAAGTGATGAACTGGTCCATCCCGACTAAGAGTTGTTACAAAATGT
AGAGAAATATGAGGAAGATTTCTGTGGCTTAGAAATGAGTCTTCAAGAGT
CTAATATTAAATGAAAGGTTGAAACCTTAGCCCCTGTTGTAATGTGTTCT
GTCACTTGTCCTGTGTAACTTCTCATTTCGATGTTTTTCGTCAGTTTCCT
TGGTTCTCCCAGTCAGGCACAAAACTGCCTCCCTGATTGTTACACAAAGC
TTGTGAGAACGTCGGCAAAAAGAACTGTGTGACTGGAAGTCAGGTTCATG
GTGGATATAAGGGTTGAGGTATGAAAACCGAACATGGGCTTGTTGGTGAG
ACACGGTAGGACACAAAAGAACAAATTAAACATGAAAGAACTTTGGTTGA
CTTCTGGCCAGGTCGTTCCAGTTTAACACCTGGCTTTTTATTTCAAGACC
ACTTTAATTCAATTTCTGCAAACAATGACATCCTCACTAGATGATAGCTT
ACTTGCTAGATACTAGGAGATACCTTGGAATAGACACTATACACGACATT
GACGGTGGAGCGACA Coding sequence (CDS) from alignment at Sc0000203:447962..454076- >transcript:BL96364_cuf11 ID=transcript:BL96364_cuf11|Name=transcript:BL96364_cuf11|organism=Branchiostoma lanceolatum|type=CDS|length=2004bp|location=Sequence derived from alignment at Sc0000203:447962..454076- (Branchiostoma lanceolatum)
TCTGTTTGGTTGCCACTGGTTACTCAGTGTTCCGTGTTGTTGCTAGGTTA
CCCGCCATTCTGTTCTGAGAACCCCCAGGAGACCTACAGGAAGGTGATGA
ACTGGAAGGAGATGCTGATCTTCCCGCCCGAGGTGCCGATCTCCTTCAAC
TCACGCAACCTCATCGAAAGGTTGTGCACCGACATGGACGTGCGACTGGG
GAAGCAGGGCATCGAGGAGCTGAGGGAAAATCAGTTTTTCAAGGCTGTTG
ACTGGGAGCACATAAGAGAGCGCCCAGCGCCGTTTCCCGTCACAGTGAAG
AGCTTTGACGACACGTCCAACTTCGACGAGTTCCCCGAGATTGAGCTGCA
GCCGCCAACACCAACCTCCAAAGAAGGGGAGGAGAACAAGTACAAGGACT
GGGTTTTCCTGAACTACACTTTCAAAAGATTCGACGCCTTGACGCAGCGC
GGCGTTCCCCGACAGCCGACGCGCAACGCTCTGCCCAAGGAGAAGTGCTA
ATCTGTTTGGTTGCCACTGGTTACTCAGTGTTCCGTGTTGTTGCTAGGTT
ACCCGCCATTCTGTTCTGAGAACCCCCAGGAGACCTACAGGAAGGTGATG
AACTGGAAGGAGATGCTGATCTTCCCGCCCGAGGTGCCGATCTCCTTCAA
CTCACGCAACCTCATCGAAAGGTTGTGCACCGACATGGACGTGCGACTGG
GGAAGCAGGGCATCGAGGAGCTGAGGGAAAATCAGTTTTTCAAGGCTGTT
GACTGGGAGCACATAAGAGAGCGCCCAGCGCCGTTTCCCGTCACAGTGAA
GAGCTTTGACGACACGTCCAACTTCGACGAGTTCCCCGAGATTGAGCTGC
AGCCGCCAACACCAACCTCCAAAGAAGGGGAGGAGAACAAGTACAAGGAC
TGGGTTTTCCTGAACTACACTTTCAAAAGATTCGACGCCTTGACGCAGCG
CGGCGTTCCCCGACAGCCGACGCGCAACGCTCTGCCCAAGGAGAAGTGCT
AATCTGTTTGGTTGCCACTGGTTACTCAGTGTTCCGTGTTGTTGCTAGGT
TACCCGCCATTCTGTTCTGAGAACCCCCAGGAGACCTACAGGAAGGTGAT
GAACTGGAAGGAGATGCTGATCTTCCCGCCCGAGGTGCCGATCTCCTTCA
ACTCACGCAACCTCATCGAAAGGTTGTGCACCGACATGGACGTGCGACTG
GGGAAGCAGGGCATCGAGGAGCTGAGGGAAAATCAGTTTTTCAAGGCTGT
TGACTGGGAGCACATAAGAGAGCGCCCAGCGCCGTTTCCCGTCACAGTGA
AGAGCTTTGACGACACGTCCAACTTCGACGAGTTCCCCGAGATTGAGCTG
CAGCCGCCAACACCAACCTCCAAAGAAGGGGAGGAGAACAAGTACAAGGA
CTGGGTTTTCCTGAACTACACTTTCAAAAGATTCGACGCCTTGACGCAGC
GCGGCGTTCCCCGACAGCCGACGCGCAACGCTCTGCCCAAGGAGAAGTGC
TAATCTGTTTGGTTGCCACTGGTTACTCAGTGTTCCGTGTTGTTGCTAGG
TTACCCGCCATTCTGTTCTGAGAACCCCCAGGAGACCTACAGGAAGGTGA
TGAACTGGAAGGAGATGCTGATCTTCCCGCCCGAGGTGCCGATCTCCTTC
AACTCACGCAACCTCATCGAAAGGTTGTGCACCGACATGGACGTGCGACT
GGGGAAGCAGGGCATCGAGGAGCTGAGGGAAAATCAGTTTTTCAAGGCTG
TTGACTGGGAGCACATAAGAGAGCGCCCAGCGCCGTTTCCCGTCACAGTG
AAGAGCTTTGACGACACGTCCAACTTCGACGAGTTCCCCGAGATTGAGCT
GCAGCCGCCAACACCAACCTCCAAAGAAGGGGAGGAGAACAAGTACAAGG
ACTGGGTTTTCCTGAACTACACTTTCAAAAGATTCGACGCCTTGACGCAG
CGCGGCGTTCCCCGACAGCCGACGCGCAACGCTCTGCCCAAGGAGAAGTG
CTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000203 | genome | Sc0000203:447962..454076 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96364_cuf11 |
| Biotype | protein_coding |
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