|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96355_cuf5 >transcript:BL96355_cuf5-protein ID=transcript:BL96355_cuf5-protein|Name=transcript:BL96355_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=117bp
MSYDLSTQLALVGNKETVQFCFPVDLDECSPNPCQNGGVCQDLVADFSCS
CPAPYEGKTCETYGEFSYLSPFSKANNFFAPLIPSPLHLNHGRANLSCVT
YSLHASAIRTHHCSRHH Run BLAST on NCBI mRNA from alignment at Sc0000092:211225..218448- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96355_cuf5 ID=transcript:BL96355_cuf5|Name=transcript:BL96355_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=7224bp|location=Sequence derived from alignment at Sc0000092:211225..218448- (Branchiostoma lanceolatum)
TTTCAGTTTTGCTTGGTAGAGCCAAACCATGTCGTATGATTTGTCTACGC
AGCTAGCTCTTGTTGGTAACAAGGAAACTGTTCAATTCTGTTTTCCCGTA
GATCTTGACGAGTGCAGCCCCAACCCTTGTCAGAATGGAGGGGTGTGTCA
GGATCTGGTGGCTGACTTCTCTTGCAGTTGTCCTGCTCCATACGAGGGCA
AGACGTGCGAGACATATGGTGAGTTCTCCTATCTATCGCCTTTTTCAAAG
GCCAACAACTTTTTTGCCCCACTCATCCCTAGTCCCTTACATTTGAACCA
TGGTAGAGCAAACCTTTCCTGTGTCACATACAGTCTCCACGCCTCCGCCA
TACGTACCCACCACTGCTCTCGTCATCACTGAGGGGGCTGTTGTGCCGTG
GAGTCCGGGTCTGACGTGCAACGGGCTGAACTTCTTCCTGCTGGAGAACG
ACTGCAGCAACATCTACTACGTCTGCTCCCCAGGACACGACGCACCCATC
CTCATGCACTGCCCGGCCACCCTGGTCTTCAACAAGGACATCCGAGTGTG
CGACAATCCGCTAGCCGTTGTCTACTGCTAAGCTAGGCGTTACTTTCTTT
GCTGGTCACAGTGTGACCAAAATCATTGTTTGGAGTGTGCCCTGCAATAC
AAATTCCATTTAGCGACAAATGAATGGATGTCATCTTTTGATTTGTGTGT
TTTTCATTTTTAAGGATATCTGTTCATATCTGCCAGACCCTACACGATTG
AAGGGGTGACATTTATTAGGGTATACGAACATTCCCATAAAGAAAGTGTC
TTTTCACCTATCCTGTTTAAAGACAAAACTACCTGCCATTTGAAAACCGC
GACCATACATGAAATTCCAAAACCGGAAGTTCCGATGCAGTACCATGAAA
AGCCGCAAGGGGGCCCATAATCGAGCTTGCCCTTTGTTTTGTTGTCGTCA
ACATCTACCCACATACCCAATACCATCATGAGAACAATCCCTCGACAGTT
TCCAAAACCGGAAGTTCCGATGCAGTACCATGAAGAGCCGCAAGGGGGTC
CATAATCGAGCTTGCCCTTTGTTTTGTTGTCGTCGACATCTACCCACATA
CCCAATACCATCATGAGAGCAATCCCTCGATAGTTTGTTGAATCATACTG
TTAAACGACACCCCCATCCTCACACACACACACACGTGCACGTACACGTA
CACTCACATTCACATTCACCCACTAAACACAAATAAACGCTAGCGAAAGC
TACCGTCCGGGTGAAAGTAATTCAAGTACTGCATAACCGCTCAACGCGTC
TTTCGGAAGGCGTCCTGTTTGTGCAGTAACTAACGTTAGGTGTAGTAGAC
CTTCACGAGTTTAAATCGATAGAGGATGTGCTCAAAGATTGCTGCAGGTA
CTGCTTTGTATTCTAATTAACAAGGATGATTTCACCCTAAAGCCCCCTTC
TCACTGGATCCGCGGCACGCTGGCGGCGTCGTCCTAAACTGGAGCTGTGT
TACCATTGACTTTATAATGGGAATATCATTCAAAACGTACAAGTATGACC
CAAAAGACAGCAAAACACAAAAGGCCTAAGAAGATTCATTTTTTGTCGAT
GAAATTTGTTTAGTGCTTTGTCAATTCGATCGGCCGCAGCGATGCCGCCA
GCGTGCCGCGGGTCAAATGAGAGGGGGGCTTGAGTGTAATAGATTGATCA
TTTGATACCGCCTATTCCTACCAGGATGCAACAGATGAAAGTCGTTAGGG
TATTTTTCAAAGCACCGAAGTAATACAGTGAATCCTGTATGCAATACCCC
TATTTTGATGATGAACTCGTTCAAGTTGTCAAAGGTCATTACAACGTTGT
TTAAAGAATGACATGCTGCTGTGTGAAAATTCGATCACGCAAAAGCTGTT
CCCAAGTGCAGTTTCGGCGAGGCGACAATGAAGTTCCTCCTCCCCCTCCT
GTCCCTGGTGGCCTGGGTGTCCTGCACCCCACTGATGCCTGAGCCGAAGA
GTGATGGCGGCGACCCTCCGGCTGTGGACCGAGCTGTCACCGAAATGCTA
ACGACGCCAGTACCCGTGTCGATGCCAAGTACGTTACCATATGGTAGGTG
ACAACGGAAGAATGGTGGAGCTTATTTTACAGGTCATAAGACAATCAAGC
AACTTTACTTCTTAGTCTTACAACGAACATATATCTAGCTATAAACTATG
GAACAGATCGTCCGACAGGATGTAAAAAATGAAGATGCAATGATAGAATA
CTTATGAAATCCTGAAGCACCCCTCAATGTAAATTCGTCTTCCACGACGA
ATCACACAGTCAGTTTAGGATAGACAAACCCAGCAACTTAAAGAATTACA
ATGGAGGGGCTTCAACTGCAATAAAAATATATTTTCCACAGACTTCGCTG
AGGCTGAATTTGTTACCTCTTCAAAACTGAATTTTACCGAGTACACGCTC
TCATAGTAGACGAATATGTTGATAAACTCTTTGTTGAGTCTGGACTGTCT
GGTGCATTGTCTTTGCCAGGTACCGGTACCTCTGATTTCTACCCGTTCGG
TCCATCTGCTGGTGACACGGCCAACCCAAAAGTAGACGATGGAGGCTCCA
GTCGACAGTCTCTCCCTTCAGGGTTCCNATTGTCTTTGCCAGGTACCGGT
ACCTCTGATTTCTACCCATTCGGTCCATCTGCTGGTGACACGGCCAACCC
AAAAGTAGACGATGGAGGCTCCAGTCGACAGTCTCTCCCTTCAGGGTTCC
GCTACTTCGGCTCTATCTACAACTACTTCTGGGTAAACATTTACATTATA
ACATGTGACATGGATATGAATATGTATATGATTGTTAACATGTGACCTGT
GCTTAGCCCAGTGGGGCAAACATGTACAATAAAGGTCTTCATTTATCATT
TCTCCTTAGGTCGAAATCATTGAGATATCAGGTCGAGTTTATCAAAAACT
TCCATAAAGTCCCTAAGCGTCTTTTCTTCTAAACATTTACACCCTAGATT
TATATCCCTATGTGTCTCATAAGCCAATGTGGCCGCGCATGTTCAACGCA
AAGCATAAATTTTAATACATTCATTCAATCATTTTTTCGTTCGTTCATTA
ATTGATCCCTTTTAATTGATCATTGACCCATCTATCACTCTGATTCTCCT
ATATTCCTATCACTTAATTTACCATTCCTATTACATCAGATAAACAACAA
TGGTTTGGTGTCTTTCGAAGGCCGAGTTTCCCAGTTCACCCCCGACTCAT
TCCCAATTCGATCCTTTCCCATCGTGGCTGTCTTCTGGGCAGACATTGAC
ACCAGGTATGAGTTTAATTTGTTACGTCAGGTAAATATACCATATTCTAG
AGAGACATGCGAAAGAAATTAAAGTGGTATGGACACACAATAAGGTCAAA
CGGACCAAGATACAATGCTACAACTTAACGGTAGCGTGCGTAGTCCAGTG
GTTAGCGATCTTGCCTCTGGAACTAGAAGCCCCAGGTTCGATCCCGGCAG
TGTCGCTCACCCGACATGCACGCTACCGGAAAGGGTCGCAGTCCTTAGGG
CGGGACGTTAAGCCGTGGTCCACTGTTCACTGTGCTTGTCGAAAAGAGCT
AGGGGAATTTCTCCGGTACAATTAACCTGTAAATACTGCACATAGCGTCT
GTCTTCTCTGTCACGACCGGTGGAAGATTAGCTCATCTGTTCATTGAGTT
CATTTGAGCTAAACTGGTTCGAGATCACTTTCCTTTTTTTTCAACGAACA
GTAAGGTGTGCAAAGAGTGGAAGGCAGAGGAAAACATTAGGTATTGCACT
TAACATGAAGGAATGGACAAGAAGGAACTTCATGAATTCCATGCTAAGTG
AGTACTACGGCAGTCACATATTTGTTGATACAATGTACATGCATCTCTAC
TAAAAAGTTGTACAACACATCAGAGTCCAACGTTTTGCGGCGATGTACTA
CTAATGACGGATTCCCTGTCAGACGTGCAGGGGAGGTATACTGGAGACAG
ACCACCTCAGATCAGTCTCTGATCTCACAAGTGTCACAGGATATCTTGGC
AAACTACCCGGACATCCCCAGTTTCCGAGCCACCTGGGTTCTGGTCACGA
CCTACTATGATGTAACCTACTATGGGGGCAGTTCAAGAACTAACGCAAGT
CCTTTGTACTTGAGTTCTTACTTCAATGCCACAAGTTCGAATAAGGCATA
CTTTGTAGCCTATTAGCATTATGGCGGGAGGGCAACTCGTAAAGGTGCTT
AGGCATCTGTTTTACCCTCCCTTTCACATTGTGATGAACTCAAATAAAGA
AATTAGCGTTATCTTCTTCTTTTTCCATAGCGGCAGTCGTTCCAGGCTGT
GCTGGCTACCGATGGCTTCCAGTCCTTCGCCATCTTCAAGTACGGCGACA
TCGTGTGGACCACAGGAACTGCCAGTCAAGGGGATGAAGACACCGGTCTA
GGTGGAATACCAGCACAGGTCCACTGTTATTGTTCTGTATACAAAACTTG
TTATAATGAATAACCATGTGTCATTGTTGTCAGTTTGATAGACGTTTGAG
GCCACCTTCTATCCTCCTAAGAGAGGTTTCGATCGGGGTGGGGCTAGGAG
TGGCCGGGATTTTTAACGCTTCCCTTCCTCCTAGCCCCCCCCCCCCCGAT
CGAAACCTCTGCTTGGAGAATATCCATCTTCAACTGCGTCAATATCTTAC
TACTTATAACTGCTAGTTGGTCTGTCTCTAATGTGCTTTAAGCCTTTGGT
TTCCAAACATTGACATTTAACTCTCATTCTGACTTTAACTTCTAACAGGC
TGGCTTCAATGCCGGAGATGGGACTAACTATTACACCGTGCCTGGCTCAC
GGTCTGCGGAGATTGTGGACATTGAGACCAGAACTAACGTCGGGCAGCCC
GGCACCTTCATGTTCAGGATTGACCCATTCACTATCATCCCCCTCGGTAT
GTCTATTCATGATTCTCACAAATATGCTCTGTAATACAAGGTTAATTGCG
TAGGACCAGGTTAAAGTTACCTTCAATAATGTTTTGAACACATTTCGACG
AGAACAGTGAAAAAGCCGGCATTCTTATGGGAAGAGTTTCTACTGTATGG
ACCTTGTAAGAGGAGGTTTTTTCTTCATTCAAAGGACTGAAATATGTTTG
CCAAACTGCTATGAAACGGAAAGAGTAACACAAGAACATGGCGAAGAAAT
TAATAGAATATGCGGCCTGTTGTGGGATGCTTTTTAAGAGTGCAGCAGAA
ACACAACTAAAGGCATGTTAATACTGTCATCACAGTGTCATGTGCATTTC
AAAGAACATATTGGAATTTGTTTTTTCTTTATCAGGTACTGTGAGGCTAG
TTGGAGGAAGTTCTGAGTTCGAGGGCAGAGTCGAAATCAACAGAGGAGGA
GTCTGGGGGACCATCTGTGACGGCAACTGGGGGATGGAGGAGGCCCAGGT
TTGTCAGCATTTTGTCCGTCAAAAACGCACAGGGAAAAAGTATGCCCCAA
AAGCAAACGACACAATTTTGCTGTTATCGCTTGTGCTCAATAATCAATCT
CCATTTATACATACTTAGATCATTGTACGTCACAGTTAAGTATCATGTTG
AAACGGCTTCTGTTTGTTCAGAAGAGAACGTTTCATGCAACTGAAGCAAG
CTTAGTAGTAGTAGTAGCGTCAGTCTAACGAGTTTCAAAAGTATCCACGT
TTCTCCGTAGGTGGTTTGCCGTGAGATTGGCCACGGCGGTGCTGTAGCAG
CCTATGGTTCAGCACACTACGGTCAGGGCAATGGAACTATTTGGCTGAAC
AACGTGAACTGCGCCGGAAATGAGGACTCCATATCTACCTGTCCTCTGTT
ATCAAATGTGACCAACACCTGCACACATGCCAGCGATGCTGGGGTCAGAT
GCAGAGGTAAACATAATAAGAAATGGGAATCGTTATACCTTGTTTTCAAT
TGATTGTTGCCACAAGATGTTCATTTGTTAGCGCATGTACAACTGTATTC
TTTTGTTTCATGTTTCTGTATTGTATCTTTTGTTTATCTGAATAAAGTTT
TGTAAAAAAAAGAATATATATGTAATGACAAAGATGATGCTGAAGATGAT
GATGGTAATTATACAATAATCATAATGATATGCCTCGGGTGACATTATGA
CCTTGTTTTTTAAAACTGTAATGTTAATTTTTGTCAAACCAAGGCGGGAA
TGCTGTTGAATACTGGCAATACAATAAAAGTCGTTTTTCAGAATATCAAC
TTTTTTTGGTAACGTTACACCCCATGCGCAATGTCAAAGATGGGTTGCAA
TAGTTATATATTGAGAACAGATTTCTGACGTTGGATCGTTGCCTTGTTTT
CTGCAGATCTCGATAGCTGCAGGGCTAATCCTTGTCAAAACGGAGGCACA
TGTCTGGACCGAGTGGACGATTTTGTCTGCGTCTGTCAGTTCCCGTATGA
GGGAAAGCTGTGCGATATCAATAGTGAGTTGCTATCCAGATTCTCCGGAA
AAGGCAATTGTCAATAACGTTACACTAGGGTTTCAAGTAGATTCTTGTCA
TAACTTCGTAGCATGAATTGTTAAACATCAAAGAAACTTATATTCTATAT
GCATATACACAGAAAACGCGGAAACATTATTGTCGGGATTCATTATGATG
TTGGGTTGTTATATAAGTGCCCGACACCGTCATTGTAAGTATGTGACGTC
ATGAAAAAATGCAGCAATATATAGCAAATTTGCTAAAATGCTATCCAAAT
CTGACCAACATGTTCCTGTAATTAGCCGCATCTACGCTGGTACCACATAC
AACCGCTGTCCCCGTCATCATCGGCACATTCGTCTCCGGTATAAAATGCG
ACGGCTGGACCTTCTTCCTCGTGGAGAACGGCTGTAGCAGCATCTACTAC
GTCTGCTCCCCGGGACAGGACGATCCCATCCTCATGCACTGCCCGGCCAC
CCTGGTCTTCAACAAGGACCTCGGGGTGTGCGACTGGCCGGACCACGTGC
CATACTGCTCATGTCAGTCTGGACTGGCCGGCGCCTCTTGCCAAATAAGT
AAGTAGCGGCGTAACCAATCGTTTGTGTAGAAACCTATTCCTTGCAATGC
CTTTGTATTGACGATATAGCTTTTGTTTGTCTAGCTATATGCCATCATGT
GTGGAGGCACTGTCTAAAGACATGTTTTTGTTTGGGGTTTCTGTAGACCT
GGATGACTGCAGCCCTAACCCTTG Coding sequence (CDS) from alignment at Sc0000092:211225..218448- >transcript:BL96355_cuf5 ID=transcript:BL96355_cuf5|Name=transcript:BL96355_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=354bp|location=Sequence derived from alignment at Sc0000092:211225..218448- (Branchiostoma lanceolatum)
ATGTCGTATGATTTGTCTACGCAGCTAGCTCTTGTTGGTAACAAGGAAAC
TGTTCAATTCTGTTTTCCCGTAGATCTTGACGAGTGCAGCCCCAACCCTT
GTCAGAATGGAGGGGTGTGTCAGGATCTGGTGGCTGACTTCTCTTGCAGT
TGTCCTGCTCCATACGAGGGCAAGACGTGCGAGACATATGGTGAGTTCTC
CTATCTATCGCCTTTTTCAAAGGCCAACAACTTTTTTGCCCCACTCATCC
CTAGTCCCTTACATTTGAACCATGGTAGAGCAAACCTTTCCTGTGTCACA
TACAGTCTCCACGCCTCCGCCATACGTACCCACCACTGCTCTCGTCATCA
CTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000092 | genome | Sc0000092:211225..218448 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96355_cuf5 |
| Biotype | protein_coding |
|
