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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96348_cuf11 >transcript:BL96348_cuf11-protein ID=transcript:BL96348_cuf11-protein|Name=transcript:BL96348_cuf11|organism=Branchiostoma lanceolatum|type=polypeptide|length=142bp
PTTAEVTTPGICDVKMGLEDRSVSDDQITASSYKAEKEPKEARLDSRPDS
KEVATSWQPDEDTEGQWFQVDFGESVQLTSVLTQGSGGEDKWVSEFKLLY
SADTRLWQFVEDKNGEAEIFSANFNDGGIVENHLPEAVKVQK Run BLAST on NCBI mRNA from alignment at Sc0000411:124248..129760+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96348_cuf11 ID=transcript:BL96348_cuf11|Name=transcript:BL96348_cuf11|organism=Branchiostoma lanceolatum|type=mRNA|length=5513bp|location=Sequence derived from alignment at Sc0000411:124248..129760+ (Branchiostoma lanceolatum)
CCCAACTACAGCAGAGGTCACCACACCTGGTGAGATACCAGTATTTTATG
ATTTCTAGCATATATTGTTGATTTTCATAATGATGAAAAGGTCAGAGAAT
ACTGTATTTCTAATGCTCCATAGCTGCATGTACATTGTCATTCTTCAAAA
GCTTAAAGGATGTGAAAAATCTAAAGTAATTTTGCTACCAACACGAAGGC
ATCTGTAGCTGCATGTACATTCTCAGCATCAAAAGCATACTTGAATTCTA
AAATAATCATTTTGTCAACATGAAGGCATCTGTGATGTGAAGATGGGTCT
TGAAGACCGCTCCGTCTCAGACGACCAGATCACTGCCTCCTCCTACAAGG
CTGAGAAGGAGCCCAAGGAGGCTCGTCTTGACAGCCGGCCGGACAGTAAG
GAAGTGGCCACGTCTTGGCAGCCTGATGAGGACACTGAGGGACAGTGGTT
CCAGGTAAAATTTTCCTGTCTGCCAATTAGATGAAATTACGATATCTTTT
GTGTCAGGAAAGACTAGGATTCATGTTCAGATTGGCAAAGAAAAATGCAA
CAGATCTTATTAACTTTTTCTTATTTCGAATATTTCTTTTAAAACATGAT
ACAATCTCTTGGGAAAGTGTAAGCCAAGCAAACCTTTAGATTTTTTATGT
CATTTAGCCTTGAAATAAATGTTTCCTTTCAATGGATTAGGCCCTAGCAG
AGGAAACAGATCTGTTACAGGTAGAATAAATAAAACTCTAAAGGATAAAC
TTGGAGACAAAATTGCACAACGTTTAAAAACACAATATACAAGTTTGTAT
TGCAACAATATTTGCACCACCTTTATTCCATGTAAGAAAACAAAGTAAGT
ACATTTTCCTTCCCCAGGTTGACTTTGGTGAGCCAGTTCAGCTGACCAGT
GTGCTGACCCAGGGCAGTGGTGGTGAGGACAAGTGGGTGTCAGAGTTCAA
ACTGCTGTACTCAGCAGACACACGGCTGTGGCAGTTTGTGGAGGACAAGA
ATGGAGAACCTGAGGTGGGAAAAATCTGTGGTTGCCACAAAGTTCTGATC
TTTTTTCTTAGAGTCTTAGAAAAGACATAACAGTAGCTTGTCACCCTTGC
CAGGGAGTTTTCTTTTTAATTTGGCTGTGTTTACATCTGAATGCTTTTTT
TTAATTGTTAGCTGAATGGCACAGTTATGAACAGGATATATCCAAAGATA
TTGATTGATTTTTATGAAAATGGCATTGAAGATGGCTAGTAGAAACCTAC
ATGTTTTCTTTCTGTAGATCTTCAGTGCCAACTTCAATGACGAAGGTATT
GTGGAGAACCACCTGCCAGAAGCAGTGAAGGTACAGAAGGTTCGACTGCT
GCCCACCAACTGGAACAAGGGCATCGCTCTGAGGGCAGAGTTCAGGGGAT
GTCCTTATGGTAAGTCTTGTTTTTAACTATGTATATAAGTTGTTATTTTC
ATCTGGCTATGTATGAAAAATGTATTCCTAAAGAATTACATAATTTGACT
ATGATTAGCTCCTGAAATGACCAGAACTAGAAAGTAGAAAGACAGGCTCA
ATCAGCACTGAAGCTTCAGCACCAGGGACAGAGCACACCACTCCTCTCTG
ATCTATAGAACTTGCTATCACTCTCAGTATCAACCATTGGGGTTCAGTGG
TCATTCAGTCACTCTATTCTTGCATAATAAGATATTGGTAATTTCGTACT
TAGAAACCATTGTCATCTAGAATGAAAAACTTAAAAAAGATTGATGGCTA
CACTTTTTTTTCAAAATTGTAGAAGAGAAAGTGACCACACTTACCCCAGA
GACAACCGAGTCTCCACAGCCAGAATGGACGACTAAGAAGATGCCAACTT
ACACAACCAAGTTCCCAACTACAGCAGAGGTCACCACTCCTGGTGAGATA
GTACTGCTATCATGATTTCTTGCTAGATTCTTGATTTCCATCAGAATGAA
TAGGGCAAATGAACACTGTATTCCAATGCTCTATATCCACATGTACATTG
CCGGCCGTTGAAAAGCTTAGAAAAGCTAAAATAATTTTCTTGCCACTATA
AAGGTATTTGTGATGTGAAGATGGGTCTTGAAGACCGCTCCGTCTCAGAC
GACCAGATCACTGCCTCCTCCTACAAGGCTGAGAAGGAGCCCAAGGAGGC
TCGTCTTGACAGCAGGCCAGACAGTAAGGAAGTGGCCACGTCTTGGCAGC
CTGCTGAGGACACTGAAGACCAGTGGCTCCAGGTAAAATCATTCAGTCTT
CTGATCTGATTTGATGATTTTTACAATAAGTGTTGTGCCAGAAAATACCA
AAATTTTGGTACAGATTAGTAAATAAAAGTGCAGCATTTTTGAAAAATGG
TATTTTTACTACCTTAAACATTTCATAAAAAGACATGATGATTAAAAGCT
TGCGGAAAAGTGTACACCCAAGTAGCCTTTGTATAAGATTTGTATGTCAT
TTTGACTTCAAATGAATGCTTGCTTTCAGTTGACTTGGCCCTAAATATAG
CAGAGGATACAGAAGAACTATTACAGCAAGAATCAACAAAACTCTAGAGG
CTAAACTTGAAGAAAAGTTATACTCAGTGTGAAATTAACATCATACAAGT
TTGTCTTCATAGAATATTTGCACCACCCTTGTTCCATGTAAGACAACAAA
GTAAGAGAATTTTCCTTCCCCAGGTTGACTTTGGTGAGTCAGTTCAGCTG
ACCAGTGTGCTGACCCAGGGCAGTGGTGGGGAGGACAAGTGGGTGTCAGA
GTTCAAACTGCTGTACTCAGCAGACACACGGCTGTGGCAGTTTGTGGAGG
ACAAGAATGGGGAGGCTGAGGTGAGCACACAAAAGAACTGATTACCACAA
AGTTTTAATTTTTTTCATAGAGTCTTTGTAAAGGCAGAGTGAGGACTTGG
TGTACAGAAAGTGCAAAATAGAACGAAATTGAAGAAATGATTTAGTCACA
CAACACAACAACATTGTGAAAATTAACCTTGCTTTATTCTTAAAATTAAC
AAGGACCATCTCCTTGCATTCCCATGTATTTTATTTCAGTTTTCTTTCTT
TTTTGTTCAATTTTGTTCTTTTTCGTTCCCTTTTGCACTTTCTGTAGTTC
CAGTTTATTGCATTTTGTTCCATTTCCTTCCATTTCGTACTTTCTGTACA
CCCTGAATGCTTGTCATCTTTGCCAGGGAGGGTTTTTAAAGAAGACCTTG
GCTGTGTTATTATTTGAATGTTATTAGCTGCTAGGTTATCTAGTTAAATT
GTTAGCTGAATGCCAAAAGTTTGGGCAGGATATATCCATTAGATATTAAC
TATTTTTATGAAAATGACATATCAAGATGGCTGATAGAAAGGAGAGAAAG
CTATGTAAACACAAAAGGTTTTTGAAAAAGCTACATGTTTTCTTTCTGTA
GATCTTCAGTGCCAACTTCAATGATGGAGGTATTGTGGAGAACCACCTGC
CAGAAGCAGTGAAGGTTCAGAAGGTTCGACTGCTGCCCACCAACTGGAAC
AACGGCATTGCTCTAAAAGCAGAGTTCAGGGGATGTCCTTATGGTAAGTC
TTCTTTTCAACTATGTACAAGTATATTATTTTCCTCTGTCTATGTATGAA
AAAGGTCTTCTGTAAAAACTACATAATCTGATAATGATTAGATTGACAAC
TACACTTATTTTTTCAAAATTGTAGAAGAGCAAGAGACAACAACTGTTGC
TTCTGAGACGACCGAGTCTCCACAGCCAGAATGGACGACTAAGAACATGC
CAACTTACACAACCAAGTTCCCAACCACAGCAGAGGTCACCACTCCTGGT
GAGATAGCACTGATGTCATTACTTCTAGCATATATTTTTGATTTTTATAA
GAATGAAAAGGCCATTGAACACCATATTTCTAATTCTCTTATATAGCTGC
ATGTACATTGTCAGCCTTTGAAAAGCTTACTTGATATTAGAAATATTAAG
TAATTTTTTTACCAACATGAAGGTATCTGTGGTCGGTGAGATAGCACTGA
AGTCATGATTTCTAGCATATATTATTGATTTTCATAAGAATGAAAAGGCC
AATGAACACTGTACTTCTAATTTTCTATGTTATATCTGCATGTACATTGT
TAGCCTTTGAAAAGCTTACTTGATGTAAAAAATGTAAACTGATTTTTCTG
CCAATACAAAGGCATCTGTGATGTGAAGATGGGTCTTGAAGACCGCTCCG
TCTCAGACGACCAGATCACTGCCTCCTCCTACAAGGCTGAGAAGGAGCCC
AAGGAGGCTCGTCTTGACAGCCGGCTGGACAGTAAGGAAGTGGCCACGTC
TTGGCAGGCTGCTGAGGACACTGAAGGACAGTGGTTCCAGGTAAAATACT
TAGATCAACATCTTTGAAATGAAATATGATGCTCATCATATCTTGAAAAT
GTTGCTGCTTTGCAAAAGCACTTGATATCATTGTTAGAGGTGGTGTTTAC
AGTTAAAATAGATATTTTTCAATCATATTCTGCCTAAGAATTCTTTGTCT
TTGCCATATTTTTCTTCTTTGTAAAAGATTAAGTTAACAGTTTTTAAATG
TCATTTTTATTGCAAATTTTTATTGCTTAGTGCTTAGATCAACCTGTTGG
CAATGAAATAGATTGGGTGTTACTTAGCACACATATATGGTCATTTTCCC
ACAGTATATCTATTTCAGAAGGTCGAAAACTCTTTTCCATTCTTCTCCAG
GTTGACTTTGGTGAGGCGGTTCAGCTGACCAGTGTGCTGACCCAGGGCAG
TGGTGGGGAGGACAAGTGGGTGTCAGAGTTCAAACTGATGTACTCAGCAG
ACACACGGCTGTGGCAGTTTGTGGAGGACAAGAATGGGGAGCCTGAGGTG
GGAAAAAACTATGGTTCCCACAAGGTTCTGTTGCTTTTTTATAATCTTTA
GAGTCTTAGAAAAGGCAGTCAGAGAGTAATAGCTTGGTGTACAGAAAGTG
CGAAATGAAATGAAATGAAACAAATGATTTAGCCATGCAAATACAACAAC
ATTGTAAAATTTAACCTTGCCTCATTCTAAGGAAAGTTTAGAAAATAAAA
CACGTACTATTTTCTAAAATTTCCATTGATTTCATTTCAGTTTGATTCGT
CATTTGTTCTATTTCGTTCCTTTTTTGTTCCATTTTGCACTTTCCGTCGT
TCCAGTTCATTTCATTCCATTTTGTTCCATTGCATACTTTCTGTACACCC
TAATAGCTTGTCACGTTTGCCAGCAAGGGTTTTTAAAATCAAAATTTGAC
TGTGTTTTCATTCAATGTTATTAGCTGCTAGGTTAAATTGTAAGCTGAAT
GGCAAAGTTTTGAGCAGGATATATCCAAAGATATTGATTGATTTCTATGA
AAACCGCATATCAAGATGGCTACCAGAAAGGACAGAAAATCATATGAACA
ATGCGGGATTATTTGAAAGCCTACATGTTTCCTTTCTGTAGATCTTCAGT
GCCAACTTCAACGATGGAGGAATTGTGGAGAACCACTTGCCAGAAGCAGT
GAAGGTACAGAAG Coding sequence (CDS) from alignment at Sc0000411:124248..129760+ >transcript:BL96348_cuf11 ID=transcript:BL96348_cuf11|Name=transcript:BL96348_cuf11|organism=Branchiostoma lanceolatum|type=CDS|length=2130bp|location=Sequence derived from alignment at Sc0000411:124248..129760+ (Branchiostoma lanceolatum)
CCAACTACAGCAGAGGTCACCACACCTGGCATCTGTGATGTGAAGATGGG
TCTTGAAGACCGCTCCGTCTCAGACGACCAGATCACTGCCTCCTCCTACA
AGGCTGAGAAGGAGCCCAAGGAGGCTCGTCTTGACAGCCGGCCGGACAGT
AAGGAAGTGGCCACGTCTTGGCAGCCTGATGAGGACACTGAGGGACAGTG
GTTCCAGGTTGACTTTGGTGAGTCAGTTCAGCTGACCAGTGTGCTGACCC
AGGGCAGTGGTGGGGAGGACAAGTGGGTGTCAGAGTTCAAACTGCTGTAC
TCAGCAGACACACGGCTGTGGCAGTTTGTGGAGGACAAGAATGGGGAGGC
TGAGATCTTCAGTGCCAACTTCAATGATGGAGGTATTGTGGAGAACCACC
TGCCAGAAGCAGTGAAGGTACAGAAGCCAACTACAGCAGAGGTCACCACA
CCTGGCATCTGTGATGTGAAGATGGGTCTTGAAGACCGCTCCGTCTCAGA
CGACCAGATCACTGCCTCCTCCTACAAGGCTGAGAAGGAGCCCAAGGAGG
CTCGTCTTGACAGCCGGCCGGACAGTAAGGAAGTGGCCACGTCTTGGCAG
CCTGATGAGGACACTGAGGGACAGTGGTTCCAGGTTGACTTTGGTGAGTC
AGTTCAGCTGACCAGTGTGCTGACCCAGGGCAGTGGTGGGGAGGACAAGT
GGGTGTCAGAGTTCAAACTGCTGTACTCAGCAGACACACGGCTGTGGCAG
TTTGTGGAGGACAAGAATGGGGAGGCTGAGATCTTCAGTGCCAACTTCAA
TGATGGAGGTATTGTGGAGAACCACCTGCCAGAAGCAGTGAAGGTACAGA
AGCCAACTACAGCAGAGGTCACCACACCTGGCATCTGTGATGTGAAGATG
GGTCTTGAAGACCGCTCCGTCTCAGACGACCAGATCACTGCCTCCTCCTA
CAAGGCTGAGAAGGAGCCCAAGGAGGCTCGTCTTGACAGCCGGCCGGACA
GTAAGGAAGTGGCCACGTCTTGGCAGCCTGATGAGGACACTGAGGGACAG
TGGTTCCAGGTTGACTTTGGTGAGTCAGTTCAGCTGACCAGTGTGCTGAC
CCAGGGCAGTGGTGGGGAGGACAAGTGGGTGTCAGAGTTCAAACTGCTGT
ACTCAGCAGACACACGGCTGTGGCAGTTTGTGGAGGACAAGAATGGGGAG
GCTGAGATCTTCAGTGCCAACTTCAATGATGGAGGTATTGTGGAGAACCA
CCTGCCAGAAGCAGTGAAGGTACAGAAGCCAACTACAGCAGAGGTCACCA
CACCTGGCATCTGTGATGTGAAGATGGGTCTTGAAGACCGCTCCGTCTCA
GACGACCAGATCACTGCCTCCTCCTACAAGGCTGAGAAGGAGCCCAAGGA
GGCTCGTCTTGACAGCCGGCCGGACAGTAAGGAAGTGGCCACGTCTTGGC
AGCCTGATGAGGACACTGAGGGACAGTGGTTCCAGGTTGACTTTGGTGAG
TCAGTTCAGCTGACCAGTGTGCTGACCCAGGGCAGTGGTGGGGAGGACAA
GTGGGTGTCAGAGTTCAAACTGCTGTACTCAGCAGACACACGGCTGTGGC
AGTTTGTGGAGGACAAGAATGGGGAGGCTGAGATCTTCAGTGCCAACTTC
AATGATGGAGGTATTGTGGAGAACCACCTGCCAGAAGCAGTGAAGGTACA
GAAGCCAACTACAGCAGAGGTCACCACACCTGGCATCTGTGATGTGAAGA
TGGGTCTTGAAGACCGCTCCGTCTCAGACGACCAGATCACTGCCTCCTCC
TACAAGGCTGAGAAGGAGCCCAAGGAGGCTCGTCTTGACAGCCGGCCGGA
CAGTAAGGAAGTGGCCACGTCTTGGCAGCCTGATGAGGACACTGAGGGAC
AGTGGTTCCAGGTTGACTTTGGTGAGTCAGTTCAGCTGACCAGTGTGCTG
ACCCAGGGCAGTGGTGGGGAGGACAAGTGGGTGTCAGAGTTCAAACTGCT
GTACTCAGCAGACACACGGCTGTGGCAGTTTGTGGAGGACAAGAATGGGG
AGGCTGAGATCTTCAGTGCCAACTTCAATGATGGAGGTATTGTGGAGAAC
CACCTGCCAGAAGCAGTGAAGGTACAGAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000411 | genome | Sc0000411:124248..129760 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96348_cuf11 |
| Biotype | protein_coding |
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