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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96315_cuf5 >transcript:BL96315_cuf5-protein ID=transcript:BL96315_cuf5-protein|Name=transcript:BL96315_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=188bp
GSFVCSCGWGYLLNADGARCDDIDECATANGGCDHVCTNSIGSFDCSCGD
GYSLTSDGLACDDVNECATANGGCDQICTNFQSSYNCSCNVGFALDANNA
GCNDVNECWTRNGGCAHNCHNSVGSFHCSCLNGYLDNVDGFTCDDIDECS
SQNGDCEDFCTNTAGTYSCSCSDGYALTTNGHNCTDVD Run BLAST on NCBI mRNA from alignment at Sc0000111:132343..136193+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96315_cuf5 ID=transcript:BL96315_cuf5|Name=transcript:BL96315_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=3851bp|location=Sequence derived from alignment at Sc0000111:132343..136193+ (Branchiostoma lanceolatum)
GGGAAGTTTCGTCTGTAGCTGTGGCTGGGGTTATCTTCTAAATGCTGACG
GGGCTCGTTGTGATGGTAACGTTGTTTAATTGTTTGTTTGTTTGTTTGTT
TGATTACTTACACATGACGAGTAAAAACTCAAGTTTGCACCATGCCAGTG
GTTTCCTCATTCAGTTGCTTCGACAAATATTGGCGAATGTAATACTGCCA
ACGACGGTGAATTTGCCGGTGTTGTCTTTGCTTTGAGGGCATATACCAGA
GTCAGACTTGCCAATAGGAAGAAATGCTTTAATGCACTGAAGCAAGGGCT
CAGAAAAGTACTTACTGACATTGCAAGCCCCAAAAAGCTATATTCTTATG
CACCAGAAAGCCACAGCTGTTTACTTTTGAATCATGCAAAGAAAACAGAT
AATTGACCAGATCGATCGCTCGGGACAGCTGACAGAAGAAAACAAACCTC
AACTTTGACCTACTTCTAGGCTGGAATAGTCCACTCATAGCATGTGAAAC
CAAACCACTAAGATATCTCATTTAAATACGCCAACTTAACTACTGTAACT
TACAAATTTTGACCAAACTGGGAAAGCTTAGACCATACCTGTTCCTTCTA
GCCCCAAAGTCTCCAAAAAGGACCAAAATTGTAAAGAAAAAGAAGGGTTT
TCAAAAGTTAAGTGAAGGGATTCGCATTTTTTGCACTTCACTGCGCAACT
CAACAATGACGTCAGCCCTTTAGTCCTTGGCACATTGTCCGCAAAAGCTA
TATTGTGTATCATACCAGTGTTTCCCTGATACATTTGCTCCAACAGATAT
TGATGAATGTGCCACTGCTAACGGCGGGTGCGACCACGTCTGCACGAACT
CTATCGGAAGTTTCGACTGCTCCTGTGGCGACGGTTACAGCTTGACCTCT
GACGGCCTTGCTTGTGACGGTAGGACATTTTGTATAGCCTCCTACGCAGA
CTTCTAGGCGCGCTGGCATCTACTTTCGGGAGGGGGGGGGGCGCTGATTC
GCGATTTTCATTATTGGCAAGAACGATCTTCCCGGCATTAGAGAACTTAG
ACCATCTTGAAAATAGCAAAACAGCGATCCCCCCAAAAAACAACAAACGC
CACTGCTCCTAGAAGCTTGCGAAGAAGGGCAATTTTGTCTTTCTTTTGCT
TCATTTTAGGTAATAATTTCAGAGTCTTTAAAGACTGCCTAGTCTGATAC
ATTGTAGATGGCAAGTTCCTGACTATAACGAACGTTAATCCGTGAGCAAC
GTTAACAAACTCATTAGAAGTGAGGAAAGAGACAAATTAGTTTATCATAA
TGAAAGCTCATCTGTGTTGGTAGTAATCATAATACAATGCTAAACTTTCT
TCCAACACTAAGGTATTCACGGATCGAATTTTCGACGACCACTGTCGCCT
TCTTCAGGATCAAAAATGACCAATCACTGCGTAAACTCGCGAGACAGTGG
GCGTTATAAACTTCCTGGCACGTTTGACCAATTGCTGACGTCACGTATCT
GTATGACACGTGCCAATAAAGTTACGTGTCTGTAACTCTCGCGAGTTTAC
GTTCGGCAGTGATTTGTCATTATTGATCTGAAGAAGGCGACAGTGGTCGT
CGAAAATTCGATCCGTGAATACCTTAGTATTTGAAGAAAGTTTAGCATTG
TATTAAAATTATTCTATCTTTGATCTTCACACAGACGTGAACGAGTGCGC
AACTGCCAATGGAGGCTGCGACCAGATCTGTACAAACTTCCAAAGCAGCT
ACAACTGTTCCTGTAACGTTGGATTCGCTTTGGATGCCAACAATGCCGGC
TGCAACGGTAAGTGTGAACTCAAAAATATTGTTTTCTACCAGAAGATATC
ATAAAACAAAATATACGTCATCATAGATTTTAGATATAGGGACTCAAATT
CCCCTTAAAATGTATTATTTTACATTATGACAGCATTCGTGAATAGTTTC
ATCATGTTGGTAGGTAACTAGATAACGACGTTCTTTGTACACAACCAAGT
GTTTCATTCACTTGACATACGTTGGGTGACAGACGCCCACCGAAACATCA
GCTTGAATATGGCGTGTGGCGTAACGGCTAGAAAATTCGGTCGTCAAACA
AGGGAGCCCGAGTTCAGACCCAGCCTACCCCCAGACATGTCTGGACATAC
GCCTGGACGTTGTGCCCTTGGGAAAGGCACTTTACACGACTTTCCACACT
TCACTCAGGTGTAAATGAGTACCTAGCTTCGGTTAGGGACGTCCCTCGGA
TAGGACGTTAAATGGAGGTCCCGTGTTTGAGGAGAGCCACACCTTGAGCA
CGTTGAAGAACCCACCGCACTTATTGAAAAGAGAAGGGGTCCTCCCCGGT
GTGAGTGGTTCAAAACCGACAGTCCTATGGCCGCACATGGGGTAATTCTC
GTATTGAGGTCACCCTAACACCGAATGACTGTCGCTACAGACCCTTGCGA
TCTAGCCCCGCCAAATGTGCGCCCCTCGCAATTCAGCCCCTGGCTGCGAA
GAGAGAGTATTCGGCCTACCCAATAACGTTGGGTGACAGACGCCCACCGA
AACGTCAGCTTGAATAAATCACTCGGTTCTGTACAAAGAACTTTGGTATC
CAGACGACATTTTTTTGTCTTTTCATTATAAAGACTAGGGATTAATCAGC
CAACTAAAATTACGTTCTTACACTCTGCTCTGTTGCATTTCAGATGTGAA
TGAGTGTTGGACTCGGAACGGCGGCTGTGCGCATAACTGCCACAATTCCG
TGGGAAGCTTCCACTGTTCCTGTCTGAATGGGTATCTGGACAATGTCGAC
GGGTTTACGTGTGACGGTAGGTGCACTGTGGATGACCTAGACACACATAC
TAGTATGATCCTGATACTCTCACGAAGAATGTAATGTAAGTTACACATTC
ACTGGTCCAACACAAACATTTCAAATATTGATGTAGATGGATTTTGTAAC
CGAATTCATACATTCAGACGTGTACTAAAATAAGATATCTAATAAAGACA
TTCTTTCCACAATGTACACGCATTATGCTACGGCATCAAAAGAAAAAAAG
GCCACTATGTTTCTGACATGTTTATGAGATTTTAGAGTGTACTTTTGACT
ATTGCATTATCGTAAAATGTTCTGGGCACATGTTTTTGAAAGGATGACGA
TGCACCACAATCCTAGTTGACAGGATCGATCCGTCCTTTATTGACATAAT
ATAACTATCTTTTTTTTAAGATATCGACGAATGCTCTTCACAAAATGGCG
ATTGTGAGGACTTTTGTACCAACACTGCCGGGACGTACAGCTGCTCCTGT
TCCGATGGCTACGCTCTGACCACGAATGGACACAACTGTACAGGCAAGTT
AATTTGCTGAGTTAAAGTTAAGGAACCAACACACTTCTCGAGAAGGGTAG
GGTTGACCCGCTGTAAAGGGGAAAGGTAAGATATGGTATTGACTGGCGGA
GCCCATCCCACTCCTTCCACCGCCTCTACCTCCTCAACCAATTTTGCAAC
TGCATGGAGTGAAGAAAGGAAAGTCTTGTTCAATGTTTTGTCGTGTTAAG
TCCCAAGGACACAACGTCTAGCCAGGCTTGGTCGGGTTTTTTTTGGCCTG
TCGATGTCGTACCCGCTAGTCAAGCCACTCAGCCATTTGACGACCTGTTG
TGCTTGGCTAAAAACACGAGCCGTAGCGAATCCGCTTTGCACTGAATGTA
TCAGCTATCAAAATTACGTCTTGCTTCGTCCCTACATTACCCATGTCACT
GCAGTTTCATATACTGTATGTAATTCATAGAACTGCCTTCATCCAACTTT
GTTATTAAAAATGAGACTAACAATATTTTGTGGTTCATTCTAGATGTGGA
C Coding sequence (CDS) from alignment at Sc0000111:132343..136193+ >transcript:BL96315_cuf5 ID=transcript:BL96315_cuf5|Name=transcript:BL96315_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=3384bp|location=Sequence derived from alignment at Sc0000111:132343..136193+ (Branchiostoma lanceolatum)
GGAAGTTTCGTCTGTAGCTGTGGCTGGGGTTATCTTCTAAATGCTGACGG
GGCTCGTTGTGATGATATTGATGAATGTGCCACTGCTAACGGCGGGTGCG
ACCACGTCTGCACGAACTCTATCGGAAGTTTCGACTGCTCCTGTGGCGAC
GGTTACAGCTTGACCTCTGACGGCCTTGCTTGTGACGACGTGAACGAGTG
CGCAACTGCCAATGGAGGCTGCGACCAGATCTGTACAAACTTCCAAAGCA
GCTACAACTGTTCCTGTAACGTTGGATTCGCTTTGGATGCCAACAATGCC
GGCTGCAACGATGTGAATGAGTGTTGGACTCGGAACGGCGGCTGTGCGCA
TAACTGCCACAATTCCGTGGGAAGCTTCCACTGTTCCTGTCTGAATGGGT
ATCTGGACAATGTCGACGGGTTTACGTGTGACGATATCGACGAATGCTCT
TCACAAAATGGCGATTGTGAGGACTTTTGTACCAACACTGCCGGGACGTA
CAGCTGCTCCTGTTCCGATGGCTACGCTCTGACCACGAATGGACACAACT
GTACAGATGTGGACGGAAGTTTCGTCTGTAGCTGTGGCTGGGGTTATCTT
CTAAATGCTGACGGGGCTCGTTGTGATGATATTGATGAATGTGCCACTGC
TAACGGCGGGTGCGACCACGTCTGCACGAACTCTATCGGAAGTTTCGACT
GCTCCTGTGGCGACGGTTACAGCTTGACCTCTGACGGCCTTGCTTGTGAC
GACGTGAACGAGTGCGCAACTGCCAATGGAGGCTGCGACCAGATCTGTAC
AAACTTCCAAAGCAGCTACAACTGTTCCTGTAACGTTGGATTCGCTTTGG
ATGCCAACAATGCCGGCTGCAACGATGTGAATGAGTGTTGGACTCGGAAC
GGCGGCTGTGCGCATAACTGCCACAATTCCGTGGGAAGCTTCCACTGTTC
CTGTCTGAATGGGTATCTGGACAATGTCGACGGGTTTACGTGTGACGATA
TCGACGAATGCTCTTCACAAAATGGCGATTGTGAGGACTTTTGTACCAAC
ACTGCCGGGACGTACAGCTGCTCCTGTTCCGATGGCTACGCTCTGACCAC
GAATGGACACAACTGTACAGATGTGGACGGAAGTTTCGTCTGTAGCTGTG
GCTGGGGTTATCTTCTAAATGCTGACGGGGCTCGTTGTGATGATATTGAT
GAATGTGCCACTGCTAACGGCGGGTGCGACCACGTCTGCACGAACTCTAT
CGGAAGTTTCGACTGCTCCTGTGGCGACGGTTACAGCTTGACCTCTGACG
GCCTTGCTTGTGACGACGTGAACGAGTGCGCAACTGCCAATGGAGGCTGC
GACCAGATCTGTACAAACTTCCAAAGCAGCTACAACTGTTCCTGTAACGT
TGGATTCGCTTTGGATGCCAACAATGCCGGCTGCAACGATGTGAATGAGT
GTTGGACTCGGAACGGCGGCTGTGCGCATAACTGCCACAATTCCGTGGGA
AGCTTCCACTGTTCCTGTCTGAATGGGTATCTGGACAATGTCGACGGGTT
TACGTGTGACGATATCGACGAATGCTCTTCACAAAATGGCGATTGTGAGG
ACTTTTGTACCAACACTGCCGGGACGTACAGCTGCTCCTGTTCCGATGGC
TACGCTCTGACCACGAATGGACACAACTGTACAGATGTGGACGGAAGTTT
CGTCTGTAGCTGTGGCTGGGGTTATCTTCTAAATGCTGACGGGGCTCGTT
GTGATGATATTGATGAATGTGCCACTGCTAACGGCGGGTGCGACCACGTC
TGCACGAACTCTATCGGAAGTTTCGACTGCTCCTGTGGCGACGGTTACAG
CTTGACCTCTGACGGCCTTGCTTGTGACGACGTGAACGAGTGCGCAACTG
CCAATGGAGGCTGCGACCAGATCTGTACAAACTTCCAAAGCAGCTACAAC
TGTTCCTGTAACGTTGGATTCGCTTTGGATGCCAACAATGCCGGCTGCAA
CGATGTGAATGAGTGTTGGACTCGGAACGGCGGCTGTGCGCATAACTGCC
ACAATTCCGTGGGAAGCTTCCACTGTTCCTGTCTGAATGGGTATCTGGAC
AATGTCGACGGGTTTACGTGTGACGATATCGACGAATGCTCTTCACAAAA
TGGCGATTGTGAGGACTTTTGTACCAACACTGCCGGGACGTACAGCTGCT
CCTGTTCCGATGGCTACGCTCTGACCACGAATGGACACAACTGTACAGAT
GTGGACGGAAGTTTCGTCTGTAGCTGTGGCTGGGGTTATCTTCTAAATGC
TGACGGGGCTCGTTGTGATGATATTGATGAATGTGCCACTGCTAACGGCG
GGTGCGACCACGTCTGCACGAACTCTATCGGAAGTTTCGACTGCTCCTGT
GGCGACGGTTACAGCTTGACCTCTGACGGCCTTGCTTGTGACGACGTGAA
CGAGTGCGCAACTGCCAATGGAGGCTGCGACCAGATCTGTACAAACTTCC
AAAGCAGCTACAACTGTTCCTGTAACGTTGGATTCGCTTTGGATGCCAAC
AATGCCGGCTGCAACGATGTGAATGAGTGTTGGACTCGGAACGGCGGCTG
TGCGCATAACTGCCACAATTCCGTGGGAAGCTTCCACTGTTCCTGTCTGA
ATGGGTATCTGGACAATGTCGACGGGTTTACGTGTGACGATATCGACGAA
TGCTCTTCACAAAATGGCGATTGTGAGGACTTTTGTACCAACACTGCCGG
GACGTACAGCTGCTCCTGTTCCGATGGCTACGCTCTGACCACGAATGGAC
ACAACTGTACAGATGTGGACGGAAGTTTCGTCTGTAGCTGTGGCTGGGGT
TATCTTCTAAATGCTGACGGGGCTCGTTGTGATGATATTGATGAATGTGC
CACTGCTAACGGCGGGTGCGACCACGTCTGCACGAACTCTATCGGAAGTT
TCGACTGCTCCTGTGGCGACGGTTACAGCTTGACCTCTGACGGCCTTGCT
TGTGACGACGTGAACGAGTGCGCAACTGCCAATGGAGGCTGCGACCAGAT
CTGTACAAACTTCCAAAGCAGCTACAACTGTTCCTGTAACGTTGGATTCG
CTTTGGATGCCAACAATGCCGGCTGCAACGATGTGAATGAGTGTTGGACT
CGGAACGGCGGCTGTGCGCATAACTGCCACAATTCCGTGGGAAGCTTCCA
CTGTTCCTGTCTGAATGGGTATCTGGACAATGTCGACGGGTTTACGTGTG
ACGATATCGACGAATGCTCTTCACAAAATGGCGATTGTGAGGACTTTTGT
ACCAACACTGCCGGGACGTACAGCTGCTCCTGTTCCGATGGCTACGCTCT
GACCACGAATGGACACAACTGTACAGATGTGGAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000111 | genome | Sc0000111:132343..136193 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96315_cuf5 |
| Biotype | protein_coding |
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