transcript:BL96308_cuf11 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96308_cuf11
Unique Nametranscript:BL96308_cuf11
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96308_cuf11

>transcript:BL96308_cuf11-protein ID=transcript:BL96308_cuf11-protein|Name=transcript:BL96308_cuf11|organism=Branchiostoma lanceolatum|type=polypeptide|length=137bp
VCSCPIGHTLNENATSCDVATHSLTVRTSDRSNSQSGNYLIVEIFSDVCD
DICSTKAVFGLRTKGTEYNQTFVASDFGDPTQLRLTATGNNRLGLDWVGV
YNAYTGRHYRFNCPSDGCSLSTDASEGSEQLILKFEG
Run BLAST on NCBI

mRNA from alignment at Sc0000127:72782..76136-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96308_cuf11 ID=transcript:BL96308_cuf11|Name=transcript:BL96308_cuf11|organism=Branchiostoma lanceolatum|type=mRNA|length=3355bp|location=Sequence derived from alignment at Sc0000127:72782..76136- (Branchiostoma lanceolatum)
GTGTGCTCCTGCCCAATTGGCCACACTTTAAACGAAAATGCCACTTCGTG
CGATGGTAAGTGTTACAATCATTACTTGTTGAGAGGAATAGTAGTCATGC
AATTGTTGACGATGACTGCGATTTACCATAAAATGTAGCAAGAACTAATG
ATCCAATCTGTTTTGGTAGCCAATTTAGGTTAGCATCACCACGGTTCATA
TAAAACAACACAAACACTTTGGAAACTTTGGCTCGGTCGATAAAAAAAAT
GAATAAATGGCAATCTTCATTGACACAACAAAAATACAGGGACTTTCGTA
AGGTCTTCTACAACTATACATGCAAATAACAAACAATGGGATACAAGAAT
TAACCTATGTACAAGTATATGAATAATTCAACATGTCGAGTTTAACCTAT
CACTTACACTACTAGTTCTAAACATCCTTCCTATCTCCATTGTTATTTGA
TCAGTTCTATCATACATCATTGTACAGCTTCTGCAGTACCCTTTGCAGTA
GAAAATAATTAATCGTAAGATGATGGGTCGAACACCGAGGCTGCTTGTTT
TAATTCACATAAGCAGCCGTTGTACTCACTGTACACTGTTAAGAATACTG
ATTTCACTTTCGAATGATATGTATCACAATACAACTGGTAAACTATCAAC
GAAGATTCGATCAACGGAAAGATACGTACGTATACGTAGACACGTTGACA
TGACCCAGATCACAGAATGTATATACACAAACGTACTATATAAATTTATA
TGCAAACACGCCTCCCGTATGCCTAACATAGGTACATCAGTTTTCTTTAA
GGTTAGCATTTTTGTCCACTCTGTCACAGTATTGTCAGTATCATCAGATA
TGTGTACTGAAGACGGTGTGTTTGGTAACTAGTGACGTAATAACCATGTG
TTGTTTTATCTAACAGTGGCGACTCACAGCCTAACGGTCAGAACGAGTGA
TCGTAGTAATTCCCAGAGTGGTAATTATTTGATAGTGGAAATATTCTCTG
ACGTTTGTGATGATATCTGCTCAACAAAGGCAGTATTCGGACTCAGGACA
AAGGGGTGAGTAGAGTTAGGTTTAATTCATGCATACAGAGAAGGGTGTCT
TTGTTGGAGCTGCACTCTTTTGGAAGGGACGTAAAATGGGGGTTGGGATG
TGGCTTATTACTAAGCTGAGTTCTTACCGGCTGTAATAAAACAACAAGGT
GAATAACTGCGTTATGTACCTGAAGTAACCACTTATATACAATGTAACAT
TTAAAAGTTTATTTGTCGTGGATCTTTAGGGTGGTCCCTGAGTAACTGTA
AGTTGCCCATTTTCAATGATCCAGTGATCCTGTGATAAATGGGTTCCTTT
GGTATTTGATTCGGCAGAACATTAACCTTTCCCTTAAGGCACACTGCACA
TGTAGCTACAATATAGTGTATACATGTATTCATCCAATGATCAACCCCTA
ATTTCCCCACATGTTCAACAACAAAGGACCGAGTACAATCAAACGTTTGT
TGCTTCCGACTTCGGTGATCCCACTCAGCTTCGACTCACAGCTACCGGGA
ACAACCGGCTCGGATTAGACTGGGTACGTTCATGTACAAACTACTAAATT
CTTCAGTCTACTCGTATTTACGCCGATGAAGGTTAGACATCCAGGTAATA
AGAATCGCCACGTAGCAGTTACTCAAGCAACTGGATATGATTTTGGGAAC
GGTTAGACGTTTAAAGTAGCACCCACTACTTTTCGTCAGCGAGACTGCAT
CCACAAATTTTCGTCAGTGTGACTGACAAAAAGTAGTGGGTGCTACTTGT
AACGTCTGACCGTTTCCAAAATCATATCAAGTTACTTTAGTAACTGCTTT
TTGGCGTACTCGTATTTACTTAGTTCTAAAGTAATTCAGAGGTTGATAAT
GGGAATATTTTTATTTCCAGGTTGGCGTCTATAATGCTTATACTGGGCGA
CACTATCGTTTCAACTGCCCCAGTGACGGTTGCAGCTTGTCAACAGATGC
CAGCGAGGGGAGCGAACAACTCATTTTAAAATTTGAGGGTTAGTAGTTGA
TACGACAAAAGATTATCAGTCTAAGAGTACGAGTACATTGTAAGCGGTTG
ACGTGTTGTCAACCATTTCTATTGCCACGGTGGTCAAATTCATGCTCAGA
AACTCCCATGCCCAGCCGAATTCGAACGCTCTTCTACGATGTTCGAAATA
ACGTAATTCGATCCGAACGCGCGTTCGATTTGAGGTCACCTGCGGTCATT
GCATGTTTTTAATGCAAACCGGCGTGGCCGGGCCACTTTCCCCGTATTAG
GAGAAAAACTCACTTTTTCAAACATTTTGCCTGTTTTCAGGAGAGTATCT
ATGCTGGCACTTTGTTGTGGACATCCAACATGTATCGAAGCTACTGGCGC
CATTTTTGCTGGCCTTGAATATTAGATGGATTGTTTACGACGGTGTCAAT
TACCTCCTCCCCCTATCCGTGCGGCATGACATGCGTTCAAACGTCGTTAA
GGCCAAGCTCCAAGAAGCACCCACCTTACCTCATTAACGGCTCAAAATGA
CCGTAACGGTTTTCCCGAGGTTTGTGTTTTTGCGATTTTTGAAAAATGCC
TTTGATTTTGAATAATGGGTAATTGAGTGCGAAAATGTCAAAAACTTTTT
CACAGATTTGTCGATATTGACTATACTTAGAATAAGAAGTTAAGAAATAA
AAAAAATAAAAAAAATTTTGTTTTGTTCCTGGTCGACAAAAAATATGAAA
ATAAGAGATATTCATTGACGTTTGAAGCCTGGTCTTTGCGAAGTGTGCCT
GAAAAAACGGTCTCCCTAAAACCTGAAAATTATCGTATTTGGGAGCAAAA
TATAGAAAAATCAGCCATTCAGCGCAAAATGACAACATTCAAAGTTTGTA
AAATCGCTAATTTCGTTATATTTTGAAAATATTTTCCCGTCCCCACTATG
TTTTTTATTCACAGATGTTTTACCGTTAGCCAAAATGTTGCCTCGTGTAA
CCTACGCCTTGTCGAACGCGCATAGCAACGGGAAAGAATACCCTAGTGAC
AGACCACCGTGTGCTCAAAAACAAATATCAATTAAGAAGATAATGTTATT
GGTAAAATTCATTTTCAATTAATGATATATTAAATGTCTAAATCTGCATC
TGCCTCTTGACTTATTTTTTGGTAACATGATTGCTCCTAAAAAACTATTG
TTCCTAAAAAACAAATATTATTCTGTTAACTTAGATGATATCCTATTCTA
CCACCGATTTCTCTGCAGAGAAAATAACCATGTTAACAATAAACTTTCTA
AATAAAAAAAAACGCTGTTCTTCCTCTTCTTCATGTGTGACAAATTGAAA
TAAAC

Coding sequence (CDS) from alignment at Sc0000127:72782..76136-

>transcript:BL96308_cuf11 ID=transcript:BL96308_cuf11|Name=transcript:BL96308_cuf11|organism=Branchiostoma lanceolatum|type=CDS|length=1656bp|location=Sequence derived from alignment at Sc0000127:72782..76136- (Branchiostoma lanceolatum)
GTGTGCTCCTGCCCAATTGGCCACACTTTAAACGAAAATGCCACTTCGTG
CGATGTGGCGACTCACAGCCTAACGGTCAGAACGAGTGATCGTAGTAATT
CCCAGAGTGGTAATTATTTGATAGTGGAAATATTCTCTGACGTTTGTGAT
GATATCTGCTCAACAAAGGCAGTATTCGGACTCAGGACAAAGGGGACCGA
GTACAATCAAACGTTTGTTGCTTCCGACTTCGGTGATCCCACTCAGCTTC
GACTCACAGCTACCGGGAACAACCGGCTCGGATTAGACTGGGTTGGCGTC
TATAATGCTTATACTGGGCGACACTATCGTTTCAACTGCCCCAGTGACGG
TTGCAGCTTGTCAACAGATGCCAGCGAGGGGAGCGAACAACTCATTTTAA
AATTTGAGGGTTAGGTGTGCTCCTGCCCAATTGGCCACACTTTAAACGAA
AATGCCACTTCGTGCGATGTGGCGACTCACAGCCTAACGGTCAGAACGAG
TGATCGTAGTAATTCCCAGAGTGGTAATTATTTGATAGTGGAAATATTCT
CTGACGTTTGTGATGATATCTGCTCAACAAAGGCAGTATTCGGACTCAGG
ACAAAGGGGACCGAGTACAATCAAACGTTTGTTGCTTCCGACTTCGGTGA
TCCCACTCAGCTTCGACTCACAGCTACCGGGAACAACCGGCTCGGATTAG
ACTGGGTTGGCGTCTATAATGCTTATACTGGGCGACACTATCGTTTCAAC
TGCCCCAGTGACGGTTGCAGCTTGTCAACAGATGCCAGCGAGGGGAGCGA
ACAACTCATTTTAAAATTTGAGGGTTAGGTGTGCTCCTGCCCAATTGGCC
ACACTTTAAACGAAAATGCCACTTCGTGCGATGTGGCGACTCACAGCCTA
ACGGTCAGAACGAGTGATCGTAGTAATTCCCAGAGTGGTAATTATTTGAT
AGTGGAAATATTCTCTGACGTTTGTGATGATATCTGCTCAACAAAGGCAG
TATTCGGACTCAGGACAAAGGGGACCGAGTACAATCAAACGTTTGTTGCT
TCCGACTTCGGTGATCCCACTCAGCTTCGACTCACAGCTACCGGGAACAA
CCGGCTCGGATTAGACTGGGTTGGCGTCTATAATGCTTATACTGGGCGAC
ACTATCGTTTCAACTGCCCCAGTGACGGTTGCAGCTTGTCAACAGATGCC
AGCGAGGGGAGCGAACAACTCATTTTAAAATTTGAGGGTTAGGTGTGCTC
CTGCCCAATTGGCCACACTTTAAACGAAAATGCCACTTCGTGCGATGTGG
CGACTCACAGCCTAACGGTCAGAACGAGTGATCGTAGTAATTCCCAGAGT
GGTAATTATTTGATAGTGGAAATATTCTCTGACGTTTGTGATGATATCTG
CTCAACAAAGGCAGTATTCGGACTCAGGACAAAGGGGACCGAGTACAATC
AAACGTTTGTTGCTTCCGACTTCGGTGATCCCACTCAGCTTCGACTCACA
GCTACCGGGAACAACCGGCTCGGATTAGACTGGGTTGGCGTCTATAATGC
TTATACTGGGCGACACTATCGTTTCAACTGCCCCAGTGACGGTTGCAGCT
TGTCAACAGATGCCAGCGAGGGGAGCGAACAACTCATTTTAAAATTTGAG
GGTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96308gene:BL96308Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96308_cuf11transcript:BL96308_cuf11-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96308_cuf11-E1BL96308_cuf11-E1-1564476830-329323Branchiostoma lanceolatumexon
BL96308_cuf11-E2BL96308_cuf11-E2-1564476830-329321Branchiostoma lanceolatumexon
BL96308_cuf11-E3BL96308_cuf11-E3-1564476830-329319Branchiostoma lanceolatumexon
BL96308_cuf11-E4BL96308_cuf11-E4-1564476830-329317Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000127genomeSc0000127:72782..76136 -
Properties
Property NameValue
Transcript idBL96308_cuf11
Biotypeprotein_coding