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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96293_cuf11 >transcript:BL96293_cuf11-protein ID=transcript:BL96293_cuf11-protein|Name=transcript:BL96293_cuf11|organism=Branchiostoma lanceolatum|type=polypeptide|length=516bp
ARTISCLPSGNWNKSAEYACATTATPEAVSVNVSFSFPAVPCTNDVSTLN
SARTSLINNFRQRGICQTASQSNVDLCNSPDQMTLSCSGTSARKRRAAQY
PGVHHLLAALSKESHNRKTSLSKSPHISTPENQAKKSIMPYEEEHRMKRD
LGLNEKNIASSLAVGSNDDVVMHLVEKAGAEVTVNRVKRAGNGLDVNIEV
KAAPDTSDGSLEDSISKTQAKVQGVVKEIRNKVTSGDVAIAVDGQTYTAD
SGSFQAMAVKYDCPGGTVEIEGGCGSVPKTGGSNKAAVAVGVIVTLLLCG
AIALGGYMYYRRQRRKLPGQNVRLKDLETQENPVYGMNEALPYNTGGLEG
ADGGFLDLTKAHPENVVEIEALPEKLALSAADLQGFDDGKLSKEAAAHVV
NAAPAPSAPFVVNGITDLTEEGKKVPVPSWETFDDGRPASEAPPEYEATA
PGHSSAQGDMAKLADGSNNDWEMFDDDKLAKEAAAQHEFEAKTPDDYTDP
GGISNPLYPSQGKGNA Run BLAST on NCBI mRNA from alignment at Sc0000036:799652..803360+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96293_cuf11 ID=transcript:BL96293_cuf11|Name=transcript:BL96293_cuf11|organism=Branchiostoma lanceolatum|type=mRNA|length=3709bp|location=Sequence derived from alignment at Sc0000036:799652..803360+ (Branchiostoma lanceolatum)
CGGCCAGGACCATTTCATGTCTGCCGAGCGGCAACTGGAACAAAAGCGCG
GAGTACGCATGCGCAAGTAAGAGCAATATGTCTACTTACATTTAGGAATG
TTTATTTTGATATCCACAACAATATTTTCTACACGTTATAATTATAGGTG
CATGTTGCCGCAGTATTTCATCTTAGAGGCGGAAAACATGCAACCGATCG
AAGATGGCACACCTATACTGAACTACAGGATTATAAGTAGGAAGCACCAA
ATGCAGCCTCATTTTGGTGCATTGTCCTCCGATATTCAAAATGCCCATCG
TAATCGGGAAGATGTCTATTGTAAACTGGTGACAGGACAATAGATAAGTA
CAAAGTAAGACGTGTTATCTTTCAGTGTTTGTATTAGTTCATATTGATCA
CAAATTGTAAATGAATATCATTTCAATCATATTAACTTACATTATAGATT
CGGATACAAACGGTGCAACACAGTTAACATGATTCGTTGTGCCTAAAGCG
GGTATCACATGGACTACGGTACGTTGGCGGCCTCGCTGCGTCATTGATTG
GCTTTGCGTAACCCTTGACTTTATAATGGGAATCTCATGCAAAACGCACA
AGTATAACCGAAAGGATAGCATAGCACAGCGTAAAATATCGCTTTTATCG
ATAAGATTTATTGAGCGCAATATCAAATCTCTCGGCCACAGAAAGGTCAC
CAAGGTGCTTCAGGTCCATCGAGATACCCGCTTAACACTCTTCAATGTGC
CCATCTAACATGTAATCTGTGTAAGGCTTTTAAATTTTACCCTATATCCA
TATATTTAGCAACTGCAACACCCGAAGCAGTTTCCGTCAACGTGTCCTTC
AGCTTCCCAGCCGTCCCGTGCACCAACGACGTGTCGACGCTGAACTCTGC
CAGAACCAGCCTCATCAACAACTTTCGACAACGAGGAATCTGCCAGACAG
CTTCACAATCTAACGTCGACCTCTGCAATTCACCTGACCAGATGACGTTG
TCGTGTTCTGGCACCAGTGCACGAAAGCGACGAGCAGCACAGTATCCTGG
TGTTCATCATCTGTTGGCAGCATTGTCAAAAGAAAGTCACAATCGGAAGA
CGAGTTTGTCAAAGTCCCCACACATAAGCACACCGGAGAATCAGGCTAAG
AAGTCCATCATGCCATACGAAGAAGAGCATAGAATGAAACGAGATTTAGG
TCTCAACGAGAAAAACATTGCTTCCTCTTTGGCGGTGGGTAGCAACGATG
ACGTAGTGATGCATTTAGTCGAGAAAGCTGGGGCTGAGGTCACGGTCAAC
AGGGTCAAACGAGCAGGTAATGGTTTGGACGTGAACATAGAGGTCAAAGC
CGCTCCGGACACGTCGGATGGAAGCCTGGAGGACAGCATCAGCAAAACTC
AGGCCAAAGTACAGGGAGTTGTAAAAGAGATACGGAATAAGGTAACGTCT
GGAGACGTTGCCATAGCGGTAGATGGTCAGACCTACACGGCAGATTCTGG
CTCATTCCAGGCAATGGCTGTGAAGTATGACTGCCCCGGAGGAACAGTGG
AGATAGAAGGAGGTTGTGGTGAGTTCCATGATCTTATCTCGAATTGCAAG
TGTTTACTTCATTTTGGTAACGCAGTTTCATTTGAAAATGAATAGCTTCT
TTAAAATGAGAATTGATCATGGTCGCGGTGTTTTATTGTTGGCGATTTTC
ATGATGTTTTCTTGAATTGCAAGTGTTCACTTTATTTTGGAGCGGAATTT
TTTTGGACGAATCAATAGCTATAAAAGGGGAAATAATCATGATCGCGGTG
TTTTTAATGTTGGCGATTTCCCGTTGACCTCTTTACCGCGCCTATCGCGT
CTTCTAACCGTCTACCACGTTGTTTCAATCGCGAACAAATTTTCTTCCTA
CCTACCCGCGAAAATTTCCCCTTTTACAGTATGACAGTCATTTTGTTCTT
CTCTCAGTTAACCCACATTGTAATGAAAGTAACAATTTGGATTTGGATTT
ATTGAAATTGCAAGAGTGCAATACACGTGGCACACAGGTAGCTATTGCTG
ATGTTGCGACCCACACACATGATGTACCCGATTTGTACACTTGGGTGGAG
TGGGGAAAATCGTGTTAAGTGCCTTTTTTCCCAAAGGCACAAGATCGGTG
GCAGCAGGGGATTTGAACCCGAAACCCCTTGGTTCTGAGTCGGAAATCCT
GCCGTTACGCCACACGACCCCACAATGATCAAAGTAACAATGACAATTAA
TAATTTTTTGGAACAAAAGGAATCTATATACTCAGTATTGGAAAGCTAGT
AACTGTTGCATGTGTTTGTTGATAAACCATGCAGGTTCAGTACCAAAGAC
AGGCGGGTCCAACAAAGCTGCAGTGGCTGTTGGAGTCATCGTGACCTTAC
TGCTGTGCGGCGCCATCGCGCTAGGTGGCTACATGTACTATCGTAGGCAG
CGGCGCAAACTCCCGGGACAAAATGTCCGGCTGAAAGACTTGGAGACGCA
GGAGAATCCGGTATATGGCATGAACGAAGCCCTACCTTACAACACAGGAG
GTAAGAACTTATAACTTCTTTTTTTGTTTCAGTGTGTTTCAATATTGCTT
GCGAATTTTCTTTTCCTTTGACGTTAGACACTTATCATATATTCGAGCAG
AAACACCTTACAGTAGTTAAGTTACTATTTTACCTTCGCCAGAAGGTTAT
ATTTTCGATTAGGCTATGATGGAGTGTAAACAGCATAACTCAAAAGCTGT
TGATGGATGTTTTTGTAGGTGGGTAGGTATCGGGAAGACAAAAGTCAACG
AAGTAAAATAATGGGCCTTCTGTTGGCTTTTCACGTTACTGCAGCGGACC
TTTTATGTTTGTCTGTTTGTTTGTTTGTTTGTTTATCTATTTTTTACAAG
GATAGATCAAGATGATGTAGATGTATCGTTATAGTTTTATAACTGTGGCA
AATACGAAAACATACACAGCACTAAATGTGTTACAGTCTATTATGGCCCT
TTTAGATACTGTTTAATCTTTGTCTTTATGTTCGGTCTTGTAACAGGTTT
AGAAGGTGCTGATGGTGGGTTCCTGGACCTGACCAAGGCGCATCCCGAGA
ACGTCGTCGAAATCGAAGCTTTGCCCGAGAAGCTCGCTCTGTCTGCAGCC
GATCTACAGGGCTTCGATGATGGTAAGTTGTCCAAAGAAGCTGCGGCACA
TGTAGTGAACGCGGCCCCCGCTCCAAGCGCGCCATTCGTCGTGAACGGCA
TCACCGATCTCACAGAGGAAGGGAAGAAGGTTCCTGTCCCCAGCTGGGAG
ACCTTCGATGACGGTAGGCCGGCGTCAGAAGCCCCGCCAGAGTACGAGGC
TACTGCTCCCGGTCACTCCTCTGCACAAGGCGACATGGCCAAACTCGCAG
ATGGTTCCAACAACGACTGGGAGATGTTTGATGACGACAAGCTGGCGAAG
GAAGCTGCAGCCCAACACGAGTTCGAGGCCAAAACCCCGGACGATTATAC
TGACCCGGGAGGCATAAGCAATCCCCTATATCCATCCCAGGGCAAAGGAA
ATGCGTAAAATGTACCACAAATGTATCAAATGAGGCCCAGATATCATCTT
GATATAGATGTCAAAACAAAGCAAAAAATGTGGTTTTCACTGTTAACCTT
CATTAACATTAATCTGCCGGGTAACATAAATCCGCCACTTTGAAAACAGT
GTGTTTGAG Coding sequence (CDS) from alignment at Sc0000036:799652..803360+ >transcript:BL96293_cuf11 ID=transcript:BL96293_cuf11|Name=transcript:BL96293_cuf11|organism=Branchiostoma lanceolatum|type=CDS|length=6204bp|location=Sequence derived from alignment at Sc0000036:799652..803360+ (Branchiostoma lanceolatum)
GCCAGGACCATTTCATGTCTGCCGAGCGGCAACTGGAACAAAAGCGCGGA
GTACGCATGCGCAACAACTGCAACACCCGAAGCAGTTTCCGTCAACGTGT
CCTTCAGCTTCCCAGCCGTCCCGTGCACCAACGACGTGTCGACGCTGAAC
TCTGCCAGAACCAGCCTCATCAACAACTTTCGACAACGAGGAATCTGCCA
GACAGCTTCACAATCTAACGTCGACCTCTGCAATTCACCTGACCAGATGA
CGTTGTCGTGTTCTGGCACCAGTGCACGAAAGCGACGAGCAGCACAGTAT
CCTGGTGTTCATCATCTGTTGGCAGCATTGTCAAAAGAAAGTCACAATCG
GAAGACGAGTTTGTCAAAGTCCCCACACATAAGCACACCGGAGAATCAGG
CTAAGAAGTCCATCATGCCATACGAAGAAGAGCATAGAATGAAACGAGAT
TTAGGTCTCAACGAGAAAAACATTGCTTCCTCTTTGGCGGTGGGTAGCAA
CGATGACGTAGTGATGCATTTAGTCGAGAAAGCTGGGGCTGAGGTCACGG
TCAACAGGGTCAAACGAGCAGGTAATGGTTTGGACGTGAACATAGAGGTC
AAAGCCGCTCCGGACACGTCGGATGGAAGCCTGGAGGACAGCATCAGCAA
AACTCAGGCCAAAGTACAGGGAGTTGTAAAAGAGATACGGAATAAGGTAA
CGTCTGGAGACGTTGCCATAGCGGTAGATGGTCAGACCTACACGGCAGAT
TCTGGCTCATTCCAGGCAATGGCTGTGAAGTATGACTGCCCCGGAGGAAC
AGTGGAGATAGAAGGAGGTTGTGGTTCAGTACCAAAGACAGGCGGGTCCA
ACAAAGCTGCAGTGGCTGTTGGAGTCATCGTGACCTTACTGCTGTGCGGC
GCCATCGCGCTAGGTGGCTACATGTACTATCGTAGGCAGCGGCGCAAACT
CCCGGGACAAAATGTCCGGCTGAAAGACTTGGAGACGCAGGAGAATCCGG
TATATGGCATGAACGAAGCCCTACCTTACAACACAGGAGGTTTAGAAGGT
GCTGATGGTGGGTTCCTGGACCTGACCAAGGCGCATCCCGAGAACGTCGT
CGAAATCGAAGCTTTGCCCGAGAAGCTCGCTCTGTCTGCAGCCGATCTAC
AGGGCTTCGATGATGGTAAGTTGTCCAAAGAAGCTGCGGCACATGTAGTG
AACGCGGCCCCCGCTCCAAGCGCGCCATTCGTCGTGAACGGCATCACCGA
TCTCACAGAGGAAGGGAAGAAGGTTCCTGTCCCCAGCTGGGAGACCTTCG
ATGACGGTAGGCCGGCGTCAGAAGCCCCGCCAGAGTACGAGGCTACTGCT
CCCGGTCACTCCTCTGCACAAGGCGACATGGCCAAACTCGCAGATGGTTC
CAACAACGACTGGGAGATGTTTGATGACGACAAGCTGGCGAAGGAAGCTG
CAGCCCAACACGAGTTCGAGGCCAAAACCCCGGACGATTATACTGACCCG
GGAGGCATAAGCAATCCCCTATATCCATCCCAGGGCAAAGGAAATGCGTA
AGCCAGGACCATTTCATGTCTGCCGAGCGGCAACTGGAACAAAAGCGCGG
AGTACGCATGCGCAACAACTGCAACACCCGAAGCAGTTTCCGTCAACGTG
TCCTTCAGCTTCCCAGCCGTCCCGTGCACCAACGACGTGTCGACGCTGAA
CTCTGCCAGAACCAGCCTCATCAACAACTTTCGACAACGAGGAATCTGCC
AGACAGCTTCACAATCTAACGTCGACCTCTGCAATTCACCTGACCAGATG
ACGTTGTCGTGTTCTGGCACCAGTGCACGAAAGCGACGAGCAGCACAGTA
TCCTGGTGTTCATCATCTGTTGGCAGCATTGTCAAAAGAAAGTCACAATC
GGAAGACGAGTTTGTCAAAGTCCCCACACATAAGCACACCGGAGAATCAG
GCTAAGAAGTCCATCATGCCATACGAAGAAGAGCATAGAATGAAACGAGA
TTTAGGTCTCAACGAGAAAAACATTGCTTCCTCTTTGGCGGTGGGTAGCA
ACGATGACGTAGTGATGCATTTAGTCGAGAAAGCTGGGGCTGAGGTCACG
GTCAACAGGGTCAAACGAGCAGGTAATGGTTTGGACGTGAACATAGAGGT
CAAAGCCGCTCCGGACACGTCGGATGGAAGCCTGGAGGACAGCATCAGCA
AAACTCAGGCCAAAGTACAGGGAGTTGTAAAAGAGATACGGAATAAGGTA
ACGTCTGGAGACGTTGCCATAGCGGTAGATGGTCAGACCTACACGGCAGA
TTCTGGCTCATTCCAGGCAATGGCTGTGAAGTATGACTGCCCCGGAGGAA
CAGTGGAGATAGAAGGAGGTTGTGGTTCAGTACCAAAGACAGGCGGGTCC
AACAAAGCTGCAGTGGCTGTTGGAGTCATCGTGACCTTACTGCTGTGCGG
CGCCATCGCGCTAGGTGGCTACATGTACTATCGTAGGCAGCGGCGCAAAC
TCCCGGGACAAAATGTCCGGCTGAAAGACTTGGAGACGCAGGAGAATCCG
GTATATGGCATGAACGAAGCCCTACCTTACAACACAGGAGGTTTAGAAGG
TGCTGATGGTGGGTTCCTGGACCTGACCAAGGCGCATCCCGAGAACGTCG
TCGAAATCGAAGCTTTGCCCGAGAAGCTCGCTCTGTCTGCAGCCGATCTA
CAGGGCTTCGATGATGGTAAGTTGTCCAAAGAAGCTGCGGCACATGTAGT
GAACGCGGCCCCCGCTCCAAGCGCGCCATTCGTCGTGAACGGCATCACCG
ATCTCACAGAGGAAGGGAAGAAGGTTCCTGTCCCCAGCTGGGAGACCTTC
GATGACGGTAGGCCGGCGTCAGAAGCCCCGCCAGAGTACGAGGCTACTGC
TCCCGGTCACTCCTCTGCACAAGGCGACATGGCCAAACTCGCAGATGGTT
CCAACAACGACTGGGAGATGTTTGATGACGACAAGCTGGCGAAGGAAGCT
GCAGCCCAACACGAGTTCGAGGCCAAAACCCCGGACGATTATACTGACCC
GGGAGGCATAAGCAATCCCCTATATCCATCCCAGGGCAAAGGAAATGCGT
AAGCCAGGACCATTTCATGTCTGCCGAGCGGCAACTGGAACAAAAGCGCG
GAGTACGCATGCGCAACAACTGCAACACCCGAAGCAGTTTCCGTCAACGT
GTCCTTCAGCTTCCCAGCCGTCCCGTGCACCAACGACGTGTCGACGCTGA
ACTCTGCCAGAACCAGCCTCATCAACAACTTTCGACAACGAGGAATCTGC
CAGACAGCTTCACAATCTAACGTCGACCTCTGCAATTCACCTGACCAGAT
GACGTTGTCGTGTTCTGGCACCAGTGCACGAAAGCGACGAGCAGCACAGT
ATCCTGGTGTTCATCATCTGTTGGCAGCATTGTCAAAAGAAAGTCACAAT
CGGAAGACGAGTTTGTCAAAGTCCCCACACATAAGCACACCGGAGAATCA
GGCTAAGAAGTCCATCATGCCATACGAAGAAGAGCATAGAATGAAACGAG
ATTTAGGTCTCAACGAGAAAAACATTGCTTCCTCTTTGGCGGTGGGTAGC
AACGATGACGTAGTGATGCATTTAGTCGAGAAAGCTGGGGCTGAGGTCAC
GGTCAACAGGGTCAAACGAGCAGGTAATGGTTTGGACGTGAACATAGAGG
TCAAAGCCGCTCCGGACACGTCGGATGGAAGCCTGGAGGACAGCATCAGC
AAAACTCAGGCCAAAGTACAGGGAGTTGTAAAAGAGATACGGAATAAGGT
AACGTCTGGAGACGTTGCCATAGCGGTAGATGGTCAGACCTACACGGCAG
ATTCTGGCTCATTCCAGGCAATGGCTGTGAAGTATGACTGCCCCGGAGGA
ACAGTGGAGATAGAAGGAGGTTGTGGTTCAGTACCAAAGACAGGCGGGTC
CAACAAAGCTGCAGTGGCTGTTGGAGTCATCGTGACCTTACTGCTGTGCG
GCGCCATCGCGCTAGGTGGCTACATGTACTATCGTAGGCAGCGGCGCAAA
CTCCCGGGACAAAATGTCCGGCTGAAAGACTTGGAGACGCAGGAGAATCC
GGTATATGGCATGAACGAAGCCCTACCTTACAACACAGGAGGTTTAGAAG
GTGCTGATGGTGGGTTCCTGGACCTGACCAAGGCGCATCCCGAGAACGTC
GTCGAAATCGAAGCTTTGCCCGAGAAGCTCGCTCTGTCTGCAGCCGATCT
ACAGGGCTTCGATGATGGTAAGTTGTCCAAAGAAGCTGCGGCACATGTAG
TGAACGCGGCCCCCGCTCCAAGCGCGCCATTCGTCGTGAACGGCATCACC
GATCTCACAGAGGAAGGGAAGAAGGTTCCTGTCCCCAGCTGGGAGACCTT
CGATGACGGTAGGCCGGCGTCAGAAGCCCCGCCAGAGTACGAGGCTACTG
CTCCCGGTCACTCCTCTGCACAAGGCGACATGGCCAAACTCGCAGATGGT
TCCAACAACGACTGGGAGATGTTTGATGACGACAAGCTGGCGAAGGAAGC
TGCAGCCCAACACGAGTTCGAGGCCAAAACCCCGGACGATTATACTGACC
CGGGAGGCATAAGCAATCCCCTATATCCATCCCAGGGCAAAGGAAATGCG
TAAGCCAGGACCATTTCATGTCTGCCGAGCGGCAACTGGAACAAAAGCGC
GGAGTACGCATGCGCAACAACTGCAACACCCGAAGCAGTTTCCGTCAACG
TGTCCTTCAGCTTCCCAGCCGTCCCGTGCACCAACGACGTGTCGACGCTG
AACTCTGCCAGAACCAGCCTCATCAACAACTTTCGACAACGAGGAATCTG
CCAGACAGCTTCACAATCTAACGTCGACCTCTGCAATTCACCTGACCAGA
TGACGTTGTCGTGTTCTGGCACCAGTGCACGAAAGCGACGAGCAGCACAG
TATCCTGGTGTTCATCATCTGTTGGCAGCATTGTCAAAAGAAAGTCACAA
TCGGAAGACGAGTTTGTCAAAGTCCCCACACATAAGCACACCGGAGAATC
AGGCTAAGAAGTCCATCATGCCATACGAAGAAGAGCATAGAATGAAACGA
GATTTAGGTCTCAACGAGAAAAACATTGCTTCCTCTTTGGCGGTGGGTAG
CAACGATGACGTAGTGATGCATTTAGTCGAGAAAGCTGGGGCTGAGGTCA
CGGTCAACAGGGTCAAACGAGCAGGTAATGGTTTGGACGTGAACATAGAG
GTCAAAGCCGCTCCGGACACGTCGGATGGAAGCCTGGAGGACAGCATCAG
CAAAACTCAGGCCAAAGTACAGGGAGTTGTAAAAGAGATACGGAATAAGG
TAACGTCTGGAGACGTTGCCATAGCGGTAGATGGTCAGACCTACACGGCA
GATTCTGGCTCATTCCAGGCAATGGCTGTGAAGTATGACTGCCCCGGAGG
AACAGTGGAGATAGAAGGAGGTTGTGGTTCAGTACCAAAGACAGGCGGGT
CCAACAAAGCTGCAGTGGCTGTTGGAGTCATCGTGACCTTACTGCTGTGC
GGCGCCATCGCGCTAGGTGGCTACATGTACTATCGTAGGCAGCGGCGCAA
ACTCCCGGGACAAAATGTCCGGCTGAAAGACTTGGAGACGCAGGAGAATC
CGGTATATGGCATGAACGAAGCCCTACCTTACAACACAGGAGGTTTAGAA
GGTGCTGATGGTGGGTTCCTGGACCTGACCAAGGCGCATCCCGAGAACGT
CGTCGAAATCGAAGCTTTGCCCGAGAAGCTCGCTCTGTCTGCAGCCGATC
TACAGGGCTTCGATGATGGTAAGTTGTCCAAAGAAGCTGCGGCACATGTA
GTGAACGCGGCCCCCGCTCCAAGCGCGCCATTCGTCGTGAACGGCATCAC
CGATCTCACAGAGGAAGGGAAGAAGGTTCCTGTCCCCAGCTGGGAGACCT
TCGATGACGGTAGGCCGGCGTCAGAAGCCCCGCCAGAGTACGAGGCTACT
GCTCCCGGTCACTCCTCTGCACAAGGCGACATGGCCAAACTCGCAGATGG
TTCCAACAACGACTGGGAGATGTTTGATGACGACAAGCTGGCGAAGGAAG
CTGCAGCCCAACACGAGTTCGAGGCCAAAACCCCGGACGATTATACTGAC
CCGGGAGGCATAAGCAATCCCCTATATCCATCCCAGGGCAAAGGAAATGC
GTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000036 | genome | Sc0000036:799652..803360 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96293_cuf11 |
| Biotype | protein_coding |
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