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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96268_cuf3 >transcript:BL96268_cuf3-protein ID=transcript:BL96268_cuf3-protein|Name=transcript:BL96268_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=147bp
MNVNVPGQDHRTALHIAVNSNDIDMVSVLLDHNADIDLKDIYAMSPLTLA
ASRPQCSAELFKHMLRKSGRGTCDRRKGPCKPGSTSDISKKLSVKFSDKF
ESTPMMLVAHMAGHDSVVKMSLLLEHGAEITMRDRDGRNVLHHAMEX Run BLAST on NCBI mRNA from alignment at Sc0000228:305356..308310+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96268_cuf3 ID=transcript:BL96268_cuf3|Name=transcript:BL96268_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=2955bp|location=Sequence derived from alignment at Sc0000228:305356..308310+ (Branchiostoma lanceolatum)
AGATCACTGTGTGCTTTGTGCGGCCGTTGAACCATGTGCTCTCTTTGGAA
GCTGGCCAAAAACCCCTGCGGCTCTTCCGTACCGTGTTGTAACTTACAGT
GCTGCTGCATAACAGTTTTCGGTCAGTGACTCTTAACATTGCTTTTCGGG
ACAAATTTCGGTCGTCTCAACTATGTGTTATTCAAATGTGTCACCATTTC
GTTTTGGATAGAATCCGATAGATCTAGGCCGGATATTTATTTATGACTAT
ATATGATATTAACAAGCTTCAAACTTCTATTTTTGTCCATAAAATAATCA
ATGATAGTTACTGTGTACCAAATCAATTCAAACGTCTTTTTCATTACAAC
TCGGAATTTCATCATTATAATACAAGGCAACGAAACAACTTGAAACAGAT
ACAAGCAAAAACACAGCAGCGAATGTTCTCCATGATGTACAGATGCCCGC
AAACTTGGAATAGCTTACATGAAAACTTACAAAACTGCAAATCACTACTG
AGATTCAAAAACATGTTAAAAAGCTCCATTTTAAACAATCAATCCTTTGC
TTAACCTTCTATTCTTTGGTTTTCATTTATATCCTGCATGTCTGGGTGCA
TTTTTTGTGTTATTGACTAAAATGTGTTGTTATATATGCTTGTCGTTATT
TGCATCGTTATTATTTATCGAATTGTTTCCTTGCTTACTTAGTTGGTAAT
TTTTCTGTGTTCAGTTAGGTAATTGTTTCTTTATATATAATGATTTAGTT
CTTGTTTTTTGTTATTGTTATTATTAGTTATTGATTTGTTAGACTATTTG
TTACGATATTAAGTTGTCATTTTTTTCTCTATATCTTAATTCATCATTGT
AATTTATTCTGTTTGAAAAATGGGGATGGAATATTATAGACCACATTGGT
CTCTACCTTCCCCGGCACTATGTGTATTGATCTGTCATATGTATGTAAAA
TTCTTTTACCTGTGCGAAATAAAAAGACAAAAGACAAGATATTTGGTATT
GAAAAGATGGTAAATTTGCCATGGAACCTCCATGTGACTTTCCTTCTTTC
CATTGATAACTTTCCTTTCCTTTATTCTGTTTTCTCATCTTGCGTACTGG
ACATGCTGGCAAACAGCGTTTAGTGTCGGGCGGAAGTGGTATGAATTTGC
CAAGCAATGTTAGGTCACCATAACTGCAGAACCCCTGGATAGATTGGTAG
GATTTTTTGTATGTGGGTAGGTATTGGGTTGCACGAACGGCCGTTTTTGG
GCCCCCTGGTATGTATATGACGGTCACCTTGTTTGACTATGTTTGTCACT
GATTCCACCATCAATATATTGATATGACCAACCGATCAAGGAGTGAGCCT
CTTGCAATAGACCAGTCATGGTTTTGCTGTGCTAAAATAGTAAAAAGGTG
ACAAACTGGAATGGTATTTTTGTGGTGCAGATTCTGCTTGACGTTGGACA
AATGAACGTGAACGTCCCGGGACAGGACCACAGGACAGCCCTTCACATAG
CCGTGAACAGTAACGACATAGACATGGTCAGCGTACTCGTAAGTAAATAC
TTGCATAGCACAGTACTTCAGTCACGTATTCTGCATCTGAGCATATGCAG
TTCCTTTCCTATTTATTCTGCCAGGTATACTTCGCTGTCTTGTGACTTGT
AAGTAATATTTCATTTGTGGAAAAGTCGAAACAGTGATGAGCTAGTGTGA
TCATAAATATGATCGCTGTTTGGTAAAGTCATGTTACGTATTGTTACTGC
TAGACTTGCCAAAATAATGTATAAGCTGCAACTGAGATTCTATACTTACT
GGTATATTAGAAGAGTATAAGGTGAATTACGTAAGAGATGTTTATCTATC
TGTTATACAGTCATAGATACATAAATGATAAATCGTTTAAGGTGTGCAGC
TGTATCCTTAGAGCGTGATATAAGTCGTGTAAAATTATTTTCATTTATCA
TTAAAAAATCCTCCTCTTTGTGCTATATTAATCAAATTGGTATTTTGTTT
ATGCTTTTTCCACCACGCGTTTCCTGTATGTATTTCAGCTTGACCACAAC
GCTGATATCGACCTCAAGGATATCTACGCGATGTCACCACTGACCCTGGC
GGCGTCTCGCCCCCAGTGCTCCGCAGAACTCTTCAAGCACATGTTGAGGA
AGAGTGGCCGTGGAACTTGGTATATAATTGGATGAAGAAGTTCCATTCGG
GTTGTTTTGTGCACCAGCTACCTTCTCGATTGATTTCTAAATCTCAATGC
TAACCGAAATATTGACAACCTGTTTTTCAATCTATCGGTTACTTGTCTTT
CAGCGATCGGAGAAAAGGACCTTGTAAGCCTGGTTCCACCTCAGACGTGA
GATGCCTTTTGTTTGCTTGTTTGGTAGTCTGGCGGATCTTTCGTCCATGA
CCCATAGATAGACACTTTAACAACCATACTAACTTGGCGCAGTAACTCCT
AATTCCACACCCTGATGATACTAAGGTCACATTATCAAGCCGGGGCCCGG
CCGAAAATAAAACCATTCATATCAAGAATATACATAACTGATGCTCATGA
TTATTTTTTTGTGTTTTGATGTCTTTTAATAGTTTTATATCATACTTTTC
GTTCCCGCTAACTGCCCGGCTGGGCCCCGGGTTAGGAATTGTTATCTTAG
CATTAGTGAGCGTTAAAGTCTTGTACAATATCCCTATTCGGGGTCACTCA
ACTGAAATACATGTATCTTAAAGAATACGAAAAAGGGTTTCGTTCGTTTT
CTTTTTAAACACACAACGATCACAGATCTCTAAGAAACTTAGCGTCAAGT
TCAGCGACAAGTTCGAGTCGACGCCGATGATGCTGGTCGCCCACATGGCG
GGGCACGACTCCGTGGTGAAGATGTCGCTGCTGCTGGAACATGGTGCCGA
GATCACGATGAGAGACCGCGATGGTAGAAACGTGCTACATCATGCCATGG
AGCAN Coding sequence (CDS) from alignment at Sc0000228:305356..308310+ >transcript:BL96268_cuf3 ID=transcript:BL96268_cuf3|Name=transcript:BL96268_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1764bp|location=Sequence derived from alignment at Sc0000228:305356..308310+ (Branchiostoma lanceolatum)
ATGAACGTGAACGTCCCGGGACAGGACCACAGGACAGCCCTTCACATAGC
CGTGAACAGTAACGACATAGACATGGTCAGCGTACTCCTTGACCACAACG
CTGATATCGACCTCAAGGATATCTACGCGATGTCACCACTGACCCTGGCG
GCGTCTCGCCCCCAGTGCTCCGCAGAACTCTTCAAGCACATGTTGAGGAA
GAGTGGCCGTGGAACTTGCGATCGGAGAAAAGGACCTTGTAAGCCTGGTT
CCACCTCAGACATCTCTAAGAAACTTAGCGTCAAGTTCAGCGACAAGTTC
GAGTCGACGCCGATGATGCTGGTCGCCCACATGGCGGGGCACGACTCCGT
GGTGAAGATGTCGCTGCTGCTGGAACATGGTGCCGAGATCACGATGAGAG
ACCGCGATGGTAGAAACGTGCTACATCATGCCATGGAGCANATGAACGTG
AACGTCCCGGGACAGGACCACAGGACAGCCCTTCACATAGCCGTGAACAG
TAACGACATAGACATGGTCAGCGTACTCCTTGACCACAACGCTGATATCG
ACCTCAAGGATATCTACGCGATGTCACCACTGACCCTGGCGGCGTCTCGC
CCCCAGTGCTCCGCAGAACTCTTCAAGCACATGTTGAGGAAGAGTGGCCG
TGGAACTTGCGATCGGAGAAAAGGACCTTGTAAGCCTGGTTCCACCTCAG
ACATCTCTAAGAAACTTAGCGTCAAGTTCAGCGACAAGTTCGAGTCGACG
CCGATGATGCTGGTCGCCCACATGGCGGGGCACGACTCCGTGGTGAAGAT
GTCGCTGCTGCTGGAACATGGTGCCGAGATCACGATGAGAGACCGCGATG
GTAGAAACGTGCTACATCATGCCATGGAGCANATGAACGTGAACGTCCCG
GGACAGGACCACAGGACAGCCCTTCACATAGCCGTGAACAGTAACGACAT
AGACATGGTCAGCGTACTCCTTGACCACAACGCTGATATCGACCTCAAGG
ATATCTACGCGATGTCACCACTGACCCTGGCGGCGTCTCGCCCCCAGTGC
TCCGCAGAACTCTTCAAGCACATGTTGAGGAAGAGTGGCCGTGGAACTTG
CGATCGGAGAAAAGGACCTTGTAAGCCTGGTTCCACCTCAGACATCTCTA
AGAAACTTAGCGTCAAGTTCAGCGACAAGTTCGAGTCGACGCCGATGATG
CTGGTCGCCCACATGGCGGGGCACGACTCCGTGGTGAAGATGTCGCTGCT
GCTGGAACATGGTGCCGAGATCACGATGAGAGACCGCGATGGTAGAAACG
TGCTACATCATGCCATGGAGCANATGAACGTGAACGTCCCGGGACAGGAC
CACAGGACAGCCCTTCACATAGCCGTGAACAGTAACGACATAGACATGGT
CAGCGTACTCCTTGACCACAACGCTGATATCGACCTCAAGGATATCTACG
CGATGTCACCACTGACCCTGGCGGCGTCTCGCCCCCAGTGCTCCGCAGAA
CTCTTCAAGCACATGTTGAGGAAGAGTGGCCGTGGAACTTGCGATCGGAG
AAAAGGACCTTGTAAGCCTGGTTCCACCTCAGACATCTCTAAGAAACTTA
GCGTCAAGTTCAGCGACAAGTTCGAGTCGACGCCGATGATGCTGGTCGCC
CACATGGCGGGGCACGACTCCGTGGTGAAGATGTCGCTGCTGCTGGAACA
TGGTGCCGAGATCACGATGAGAGACCGCGATGGTAGAAACGTGCTACATC
ATGCCATGGAGCAN
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000228 | genome | Sc0000228:305356..308310 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96268_cuf3 |
| Biotype | protein_coding |
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