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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96260_cuf1 >transcript:BL96260_cuf1-protein ID=transcript:BL96260_cuf1-protein|Name=transcript:BL96260_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=157bp
ETSRAEYQCICSVDIVFVVDLSWSIGMAQFEVARQFILDFVRCFGNQDVN
IGVITYDCVPRTFIGLGTYALGDAGLLGAIQGLMYSGGLSRTSLAIRHMT
ATSNFRDEAVRAAVVLTDGNAQSDVNGQAISGESDRVFDTDNACEVANRI
LKDLCGA Run BLAST on NCBI mRNA from alignment at Sc0000381:152824..159664+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96260_cuf1 ID=transcript:BL96260_cuf1|Name=transcript:BL96260_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=6841bp|location=Sequence derived from alignment at Sc0000381:152824..159664+ (Branchiostoma lanceolatum)
GGAAACAAGCAGGGCAGAATATCAATGCAGTGAGCAGGCTCCACGCTCCT
CATAAATATTATATATTTAACACTGGTTATGTGTATAGTATCACAGTACT
AGTATTGTACATCTAATGCACATTATAGTTACATTATGCTGGTGTTTTTT
CAAGGTAAATTGTACATTGTGGTATTGAGAAAATTAATCTCTTATCCTGG
GATCATTGCTAATCTAAAGCCCCCCTATCACTGGACCCGCGGTACGCTGA
CGGCGTCGCTGCGGCCGATCGAATTAACAAAGGACTCAACAAATTTCTTC
GCCAAAAAAACGCATCTTTCTAAGCTGTGTGTGTTTTGTTGTATTTTTGG
TAATATCTGTACGATTTTAATGATATCCCCATTATAAAGTCACGGGTAAC
ATACATCCAGTTTAGGACATTCATGATGAGAAAACAAACTATCACAATCT
CTTACATTAGTTTTTTTTTGTTTTTCCTTGTTTCTAACATGGTTTTTTCA
TGACGCTCATCTAAAAGAATGGGCCTTTAATGTTAATTCTAATTAATCGG
TAGAGTTGTGCTCAATTTAATCGCAAAGTCTTCCGCCAATGAATTTAGGT
GTCAAAACATTACAGGCCAAATTGACCTTGATATCTAAAATTGCAATATA
CTAGTAACGATTGTAGTAGCTTGATATCAACATTTAAAAAAAAACATAAT
TGAAGATTTGTCGTTAGCATTTGTATCTTCGAAAGAATCACACACAGTCT
CCTTTTTTTTCAGTTGCAGCAGGATCAAAGGCTGATGACTACACACCAGG
CGACGCACAGAAGATAATCTTCCCTGCTCCAAGAGGCACCGATAACCACG
CCACGCTAAAAACCACACTGTCTGAGGAGTTGACGAGCTTTACTCTTTGT
CTGCACATGCGCTCCAACATGACCTCAAGCCATAAAATCGGCTTGGTCAG
TTATGCAGTGCCGGAACATCACAATGAGCTTCTCCTGTATGTTAACGGTG
GATTTAACGTAAGTAAAATCTTATTCGACATTGAACCATTGGCAAATTAT
CGTACTGTTGTATTTCATGATAAGTTAATGCCGGATTTGTAGGCAAAATG
ACCAATGCAAAGGGTTTTGTGGGTTGTCCATATAGTTTAGGTTGACGTAA
AATGACTTTCTTATCCCTAGTCAAGAAGGAGAATTTACTTTTCTGTGTAT
AGAAATGTGAAATTATCCGACAAATAGGAGCTCGAAGAATCTTGTCAGAA
TTCTTGCTGTAAAGTAGCGGTCAACTGGCAGCTTCTACCACAATCAGTCA
TGTGTACACAGTATTATACACTGTTCCTAGCAAGGCAAAGTACACATTAA
AATACCAAATTGTGTCATTGTTATACCGTTTCTGTTGGCATACTTCGATT
GCTTGCCAGGCATAGTTTAACAGATTTAACATTAAAAATAAGCAGGTTGG
TAATTAACTGATTGTTTTGCTAGATATACCACTTTCTTGTTGATGAAATT
TCGAAGAAGCTGTCCATGTCTTGTTCTCACGGCTACTATAAAAACTCACC
TAATCGATAATGTTTTTTGTTTTTTTTTAATTCTTTTACAGTTATACATA
CAAAATTTCAAGAAAATGGGGGACCCGGCCGTTTGGGACGGCGAGTGGCA
CGCCATATGTACCACTTGGCGCAGCAGCGATGGAGTTTGGCAGCTCTACG
CTGACGGCGTTCTGAAGGGTGGCGGCTCGGGGTTTAACGTGGGAGGAAAG
GTGCGCAGTGGTGGGGCATGGATCCTCGGACAGGACCNGCAGTGGCGGGG
CATGGATCCTCGGACAGGACCAAGACATTGTGGGGGGAGGATTCGACGCC
AATCAAGCGTTCGTTGGAGAACTGTCGGAAGTGAACCTCTGGGACCGCGT
TCTGTCTCCGGCAGAAATAGGAGCGGACTGGGCGGCGCTCTGTGATCTCC
ATGGCAACGTGATCGACTGGGACACAACTAACATTGAACTCTTTGGGGAA
ACAAGCAGGGCAGAATATCAATGCAGTGAGTAGGCTCCACGCTCCTCATA
AATATTATGTATTTAGCAATGGTTATGTGTATAATATCACAGTACTAGTA
CTGTACATCTAATGCACATTTTAGTTACATTATGCTGGTGTTTTTTGGAG
GTAAATTGTACATTGTGGTATTGAGAAAATGAATTCCTAATCCTGGGATC
ATTGCTAATCTAAGCTACATTATCATTCATGATGAGAAAACAAACGATCA
CAGTCTCTTACATTATTATTTTCTTGTTTCTAACATGTGATTTTCAGGAC
GCTCATCTGAAGGAAGGGGAATTTAATGTTAATTCTAATTAATCGGTAGA
GTTGTGCTCAATTTAGTCGCAAAGTCTTCCGCTAATGAATTTAGGTGTCA
AAACATTACAGGCCAAATTGACCTTAATATCTAAAATTGCAATATAATAA
TTTTAGAAACTTGATACCAACATAAAAAAAGCATAATTGAAGATTTCTCG
TTATCATTTGTATCTTCGAAAGGATCACACACACAGTCTTCTTTTTTTTT
CAGTTGCAGCAGGATCAAAGGTTGATGACAACATACCAGGCGACGCACAG
AAGATAATCTTCCCTGCTCCAAGAGGCACCGATAACCACGCCACGCTGAA
AACCACACTGTCTGAAGAGTTGACGAGCTTTACTCTTTGTCTGCACATGC
GCTCCAACATGACCTCAAGCCATAAAATCGGTTTGGTCAGTTATGCAGTG
CCGGAACATCACAATGAGCTTCTTCTGTATGTTAACAGTGGATTTAACGT
AAGTAAAATCTTATTCGACATTGAACCATTGGCAAATTATCGTACTGTTG
TATTTCATGATAAGTTAATGCCGGATTTGTAGGCAAAATGACCAATGCAA
AGGGTTTTGTGGATTGTCCATATAGTTTAGGTTGACGTAAAATGACTTTC
TTATCCCTAGTCAAGAAGGAGAATTTACTTTTCCGTGTATTGAAATTTGA
AAATATCCGAAAAATAGGAGCTCGAAGAATCTTGTCAGAATTCTTGTTGT
AACGTAGCAGACAACTTGCAGCTTTTACCCCAGTCAGTCATTTTTGCACA
ACATTATACATTTTTTCTAGCAAGGCAATGTACACATAAAAACACCAAAT
TGTGTCATTGTTATACCTTTTCTGTAGGCATACTTCGATTACTTGCTAGG
AATAATTCAACAAACTTTACTTTAAAAAATAAGCAGGTTGGTAATTAACT
GATTGTTTTGCTAGATATACCACTTTCTCGTTGATGAAGTTTCGAAGAAG
CTGTCCATGTCTTGTTCTCACGGCTACTGTAAAAACTCACCTAATCGGTA
ATGTTTTTTTATACTTCTTTTACAGTTATACATACAAAATTTCAAGAAAA
TGGGGGACCCGGCCGTTTGGGACGGCGAGTGGCACGCCATATGTACCACT
TGGCGCAGCAGCGATGGAGTTTGGCAGCTCTACGCTGACGGTGTGCTGAA
GGGTGGCGGCTCGGGGTTTAACGTGGGAGGAAAGGTGCGCAGTGGTGGGG
CATGGATCCTCGGACAGGACCAAGACATTGTGGGGGGAGGATTCGACGCC
AATCAAGCGTTCGTTGGAGAACTGTCGGAAGTGAACCTCTGGGACCGCGT
TCTGTCTCCGGCAGAAATAGGAGCGGACTGGGCGGCGCTCTGTGATCTCC
ATGGCAACGTGATCGACTGGGACACAACTAACATTGAACTCTTTGGGGAA
ACAAGCAGGGCAGAGTACCAATGCGGTAAGTTGCACAGACTTTTCTTTAC
AGAAAATTTACAACGTGTACGTCGTTTGACTATGATGATGATGATGATGT
GTAATATTACTGGACTACAATAGCAGTCAACTACAGCTTAAAGGCATTAC
ATGTAGTTCTTTGGGTTTAATAGTAGACTACGGTTTTGAGCTGTAATGTT
TTCGACCTTATGATCAGCTTGCTCTGAATATTCCAAATGAATCGCTTTAA
CATGTCTCATCATGTCTCATCAATCTTGACTTTTTGATTCTTGTCTTTTT
TTGTAGTTTGCTCCGTTGATATTGTCTTTGTCGTCGACCTTTCCTGGAGC
ATCGGTATGGCACAGTTTGAAGTCGCCCGGCAGTTTATCTTGGATTTCGT
TCGGTGCTTTGGTAACCAGGATGTTAATGTGAGTCCTTGGTTTCGAATAG
TCATAATCATAACTGTGAAGTTTATCTAGTAAAAACCTAGCGTTCGTGGT
GGCCAATATTGCACTGATTTAAATGGCGTTCGCATCAATGTCATTACTTT
GTAAAGTTTAACCTTCTTTACGTGCGTCTTACCCCTCTCTCCGTTCTTCT
TCTCCTTCTGCCTTTATCTTACATTCCCTTTTTCAGCTTTCCCTCTTCCC
CCTCTCTCTCTCCTTCTCTTAGACAACACATTTTAATGTCATTTTTATAT
CATCTTTCTCTCTGCATCACTGAATAACTTTCATACAGAAATCTTTCTTT
CTCACTACTTTAGATCGGTGTCATCACGTACGACTGCGTACCGAGGACCT
TCATTGGTCTGGGCACCTACGCACTTGGAGACGCCGGTCTACTTGGAGCC
ATCCAGGGTTTGATGTACAGCGGGGGTCTTAGCCGGACAAGCCTGGCTAT
TCGTCACATGACGGCTACGGTATGACCACTCTCTATTGTCGTCATAGACT
GTCTGTGTCAGGAACTTTGATCAATTTATATACCCTCTAATTGAGAAAAT
TGCGGTTTGACCAAACGCGAAAAAAATGGTAGTATTAAACAAATATGACA
GGGATGAAAGGTCAGCCTTCTTGATGTGATAAATAAACTTTAAGGTAATT
TTTCTCCTCTTTTCCCCCATGTTATACGTTAAACAGCACTTTTATTCCTG
TTTAATCTTTTTCAACATAATAGCCTTTCGCATCCCTACATATAGCAGAC
AAGTTTTAAAACTTCAGTTACGATGTACGTAAAACTTTAAGAGAATGTAT
GTACATTGCTAGGGCTAACACAGCAAATCAATTTAAACACGTTTGAGCAA
GTTCACCAACGATATGATAAATGCGATTAAGATATAAGCATTTCTGCTGG
TTTATATCTATTCTGAATACCCCAAAATAGCTCTAAGATTATTAATTAGA
TGTATCCTTCAAATAGGGTTGACATGCTTAGTTTAATCAGGTCTGTGTAT
GTTTATTCAGTCCAACTTCCGTGACGAAGCGGTACGTGCAGCCGTGGTCT
TAACAGATGGAAATGCTCAAAGTGACGTCAATGGACAGGTATTGAGCACG
CCTTGTGTTTCAATCCGTATAGTTTTATTATATGTTATTATATTTATGTA
GCGATGTAAACCTCAAATCAGATTGCATTTGGCCGCTAGCGAAATAGAAT
ACATGATTAAAAAGACCTGGAGAGTCAATATTTTTTCATCATCCATCGAT
GATTACGATTACATCAATAGACCTCTTTCTAGTTACGGCGGCCATTTTGA
ATTCCGAGAGGTCAGCTCGGGGTCACGAACCAAAACGAGGCAGTATCTGA
CCCATATCCTAAGTCTATAACCTGTAATGCCAGTTATATTATCTTCGGTG
GTACATTTCGCCCCTCTAAGATGAAATAAGCTAATATATGTGCCTTTCAT
ATGTAGGAAATATTGTTGTAATTGTGGACATTTTGACTTATTTTTGGCTA
ATTTTTTATTCGTTTTTCACATTTTTTGACGGGTAACTTAAGGACAGTGT
CTACATTTGTATATCCTCCATTTGTACTCTCCATCGGTAACCGAGGTTTA
ATATCTTTACTAGTGGAATTAAACCATAATGGTCATTGTAATTAATCTAC
CAGATAACGGGCGACTACGCATTCGAAGCCAACGAGGCCAGGAGTGCAGA
CATTGCTCTGTACAGCGTGGCCATCGGTAATCCAGTTCTTGTAAACGATG
TCGCGCTGAAGGCTATCAGCGGGGAATCCGATCGTGTGTTCGACACCGAC
AACGCCTGCGAAGTCGCTAACCGTATACTGAAGGACCTGTGTGGTGCGTA
ACTTTATACAATTTTATGTATAATTTTGTCTTTATAACTTGTATATGATG
TTTACAACTCAAAATTTACTTACTAGTTCCTCTTCTTTTTCATTTGTATC
ATTAGGGTTTATGGTATAATTTCCGTTTGTTCTTTCGTTAATTTTGCTTC
GTTTTGATTATGTATAACTATTGCCTAGTTTCAGGGGGGGGGGCACGAAA
AGCCACATAGGCTTCTGTATGGCCCCCCCTGCATGTTTTAATTTGCCCTG
TTTATCTATGGTTTTATAATTGTATACATGCATGAAAACAATAAACAACA
ATAGCTGCATACAGAACACTGCACATATCAAATTCAAATTTGCAGCCTGA
ATTATGCTTATGTTTCCACATGCAACAGTGATAGATAACTGAAATTAAGC
AGCATGCAAAGAGAAAAGAGACTTTGGAGAACAGGGATCCCATTCGCCAC
CGCAATGCCTTGTTTTTTGTGTGACTAATAGTACGTTATTAATGTCAAAC
ATCAGTGACAGTAGTTTGCTGATATATAATAAGTTACTTGTCTCATAATA
TTACTTAGTAACTTACTTCATAATGTACCGGCTCACTTGACTTTGTGAAC
CCCATACCATTCACCCGCTTAATTCAGAACGTATTATACATTACGGAGAA
GACACCCTCCCTAAATATGGGCAATTAGTTGGTTTAGAGAATATCAATTG
TATTCTTTTTTTATTCTTACAGGGTGAACCTACACGGAGAATGTGAATCA
AGGACATCTACTTCATGCCAACCTGACTTCTAGAAATATCC Coding sequence (CDS) from alignment at Sc0000381:152824..159664+ >transcript:BL96260_cuf1 ID=transcript:BL96260_cuf1|Name=transcript:BL96260_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2370bp|location=Sequence derived from alignment at Sc0000381:152824..159664+ (Branchiostoma lanceolatum)
GAAACAAGCAGGGCAGAATATCAATGCATTTGCTCCGTTGATATTGTCTT
TGTCGTCGACCTTTCCTGGAGCATCGGTATGGCACAGTTTGAAGTCGCCC
GGCAGTTTATCTTGGATTTCGTTCGGTGCTTTGGTAACCAGGATGTTAAT
ATCGGTGTCATCACGTACGACTGCGTACCGAGGACCTTCATTGGTCTGGG
CACCTACGCACTTGGAGACGCCGGTCTACTTGGAGCCATCCAGGGTTTGA
TGTACAGCGGGGGTCTTAGCCGGACAAGCCTGGCTATTCGTCACATGACG
GCTACGTCCAACTTCCGTGACGAAGCGGTACGTGCAGCCGTGGTCTTAAC
AGATGGAAATGCTCAAAGTGACGTCAATGGACAGGCTATCAGCGGGGAAT
CCGATCGTGTGTTCGACACCGACAACGCCTGCGAAGTCGCTAACCGTATA
CTGAAGGACCTGTGTGGTGCGTAAGAAACAAGCAGGGCAGAATATCAATG
CATTTGCTCCGTTGATATTGTCTTTGTCGTCGACCTTTCCTGGAGCATCG
GTATGGCACAGTTTGAAGTCGCCCGGCAGTTTATCTTGGATTTCGTTCGG
TGCTTTGGTAACCAGGATGTTAATATCGGTGTCATCACGTACGACTGCGT
ACCGAGGACCTTCATTGGTCTGGGCACCTACGCACTTGGAGACGCCGGTC
TACTTGGAGCCATCCAGGGTTTGATGTACAGCGGGGGTCTTAGCCGGACA
AGCCTGGCTATTCGTCACATGACGGCTACGTCCAACTTCCGTGACGAAGC
GGTACGTGCAGCCGTGGTCTTAACAGATGGAAATGCTCAAAGTGACGTCA
ATGGACAGGCTATCAGCGGGGAATCCGATCGTGTGTTCGACACCGACAAC
GCCTGCGAAGTCGCTAACCGTATACTGAAGGACCTGTGTGGTGCGTAAGA
AACAAGCAGGGCAGAATATCAATGCATTTGCTCCGTTGATATTGTCTTTG
TCGTCGACCTTTCCTGGAGCATCGGTATGGCACAGTTTGAAGTCGCCCGG
CAGTTTATCTTGGATTTCGTTCGGTGCTTTGGTAACCAGGATGTTAATAT
CGGTGTCATCACGTACGACTGCGTACCGAGGACCTTCATTGGTCTGGGCA
CCTACGCACTTGGAGACGCCGGTCTACTTGGAGCCATCCAGGGTTTGATG
TACAGCGGGGGTCTTAGCCGGACAAGCCTGGCTATTCGTCACATGACGGC
TACGTCCAACTTCCGTGACGAAGCGGTACGTGCAGCCGTGGTCTTAACAG
ATGGAAATGCTCAAAGTGACGTCAATGGACAGGCTATCAGCGGGGAATCC
GATCGTGTGTTCGACACCGACAACGCCTGCGAAGTCGCTAACCGTATACT
GAAGGACCTGTGTGGTGCGTAAGAAACAAGCAGGGCAGAATATCAATGCA
TTTGCTCCGTTGATATTGTCTTTGTCGTCGACCTTTCCTGGAGCATCGGT
ATGGCACAGTTTGAAGTCGCCCGGCAGTTTATCTTGGATTTCGTTCGGTG
CTTTGGTAACCAGGATGTTAATATCGGTGTCATCACGTACGACTGCGTAC
CGAGGACCTTCATTGGTCTGGGCACCTACGCACTTGGAGACGCCGGTCTA
CTTGGAGCCATCCAGGGTTTGATGTACAGCGGGGGTCTTAGCCGGACAAG
CCTGGCTATTCGTCACATGACGGCTACGTCCAACTTCCGTGACGAAGCGG
TACGTGCAGCCGTGGTCTTAACAGATGGAAATGCTCAAAGTGACGTCAAT
GGACAGGCTATCAGCGGGGAATCCGATCGTGTGTTCGACACCGACAACGC
CTGCGAAGTCGCTAACCGTATACTGAAGGACCTGTGTGGTGCGTAAGAAA
CAAGCAGGGCAGAATATCAATGCATTTGCTCCGTTGATATTGTCTTTGTC
GTCGACCTTTCCTGGAGCATCGGTATGGCACAGTTTGAAGTCGCCCGGCA
GTTTATCTTGGATTTCGTTCGGTGCTTTGGTAACCAGGATGTTAATATCG
GTGTCATCACGTACGACTGCGTACCGAGGACCTTCATTGGTCTGGGCACC
TACGCACTTGGAGACGCCGGTCTACTTGGAGCCATCCAGGGTTTGATGTA
CAGCGGGGGTCTTAGCCGGACAAGCCTGGCTATTCGTCACATGACGGCTA
CGTCCAACTTCCGTGACGAAGCGGTACGTGCAGCCGTGGTCTTAACAGAT
GGAAATGCTCAAAGTGACGTCAATGGACAGGCTATCAGCGGGGAATCCGA
TCGTGTGTTCGACACCGACAACGCCTGCGAAGTCGCTAACCGTATACTGA
AGGACCTGTGTGGTGCGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000381 | genome | Sc0000381:152824..159664 + |
Properties
| Property Name | Value |
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| Transcript id | BL96260_cuf1 |
| Biotype | protein_coding |
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