|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96247_cuf1 >transcript:BL96247_cuf1-protein ID=transcript:BL96247_cuf1-protein|Name=transcript:BL96247_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=194bp
IDESRGTIEKNLNLLAIGYVILLVYATMSLGQFNCIGQKIYVSLTGMVCV
GLAVAGSIGVCSAVGAAYGPLHTILPFLILGIGVDDMFVIVTAWSNLSPA
DRKRDRREQAALALKHAGVSITVTSMTDVVAFGVGASTILPALQSFCIYA
AVSVFLAFVYSCTLFFAVVCLDFQRWENLRNAICCCYKHSPGYL Run BLAST on NCBI mRNA from alignment at Sc0000051:1442901..1446620+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96247_cuf1 ID=transcript:BL96247_cuf1|Name=transcript:BL96247_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3720bp|location=Sequence derived from alignment at Sc0000051:1442901..1446620+ (Branchiostoma lanceolatum)
GGATCGACGAATCACGGGGAACTATCGAGAAGAACCTGAACCTGTTGGCT
ATCGGATACGTCATCCTGCTCGTTTATGCGACCATGTCGTTGGGCCAGTT
TAATTGCATTGGGCAAAAGGTATTTGATTAGAATCATTTGGGCACTGCAT
AGAGGGTATTACACATCTGCTGTCACCATCTTGAATTCGCTGCTCGTGTC
ACTTGACCTAGCTCCAGGTCCAACAAATCTGAAAAGCATCGTGTGTACGT
TGTCCCTCCCCCAACCGTCCTCCATGAAAAAAAAAACTCAAATATAATGT
GCGTCGAAGAGCAAAATATCTTCAAAACACCAATAACGTAGAGGCTAGAT
GACGTTATAGTGAAGTGACTGCAGGAATCGATTTTTTTCAAGATCTACGT
GTCGTTGACTGGCATGGTCTGCGTGGGGCTGGCAGTCGCCGGGTCCATTG
GAGTCTGCTCGGCGGTAGGAGCTGCATATGGGCCGCTTCACACAATCCTG
CCTTTCCTCATCCTGGGTACGTGTCTTTTCTTCAAGAAAACACCCCAGCA
ATTCTTTAAACAGCTGATAGGGTTCCCCAACTTGTCTTTTGGGAACAAAG
GCTGACTAACTTCCAAGAATAGTATGCAGAACACGAGATACAAAAACAAG
AAGTTCTGCTGCCAATTTCATGTGCATGAAAAATTTCATGTACTTATAGC
AGTAAGAAACCACATTTAGACAACCAATATGACCCAAAGCTTCAAAATGG
TCGAAACTTGTTAGAATCTGAAAAGATTAACAGGTAAATTTCGGCAAAGC
GCTATGTCGGAGGTGCATTGTCTTGGGTTTTGAGTGCTTCGGTCGTAATT
ACAAGCTAGCAGCGGGAAAGTTTCTGTTGTGGGGGTGCAGCTCCGTATAG
TTTTCAGATACAATTAACGGGGATCATGAGGTTAGAGGTTGTTTGCAATT
TTTCTTACCATGTATCAATATAGAATAAATAGCATACGTGTATTTCCTGC
AGCTTCAGCTATAAACGCGCCCATGTAAAGCAGATATTTTTTTATTGCAA
TATTTAGATACATGACATGATGACGACAGACTCAAGCTTACAGCTTATTT
TCGTGTCGACAGAATACATTACAGAAGTACAAAACAAATATTACAAATAC
TGAAAATGAAAAGAAAAAACAGGTGCCGACATGCAAAGCATAAGAACAAC
AAATTATCTCAAATAAACTACATGACAGAAATCTTGAAATGTAAGAAAAT
TTAAATCAACAAAGAGATAAATATGTGGGCAGGTACTACAAGACTGGTAG
GATGGGGCGTTGGCTACTCAAATCTTGCATTGTTTGAATTCGTAAGGAAG
GGTGAGCCTTTAAGCAATAATTGAATTAGGATATTATCCGAGAGATCATT
GAGATTTGTGACTGATCCTACCAGATCTTCTAAATTGCTGAAGAGTAAGG
AACGGTAATGAGTGTAGTTTGGGCAGTACAAGAAATAATGAGAAATACTT
TCACAAGGATGACCACAGGTACAAGCAGGACTGGTAACTAGGTTGCGAGT
GTACAAATTGAAGTTTAAACTGAAAGTACCGAGACGGAAACGAGTGAGAA
GAGCTCAGGTGTAACGAGGATCAGTGTTGAAATATGGGACAGATACAGGG
CGCACAGATTTGATCATTGTTTTCTTAAAATATGGAAGACTTAATGATCG
ATCTGCCAAGGTAAGGTTGTTCCAATGATACGTAGCATAAGGTATGAATG
ATTTCTTAAAGCAACTTGTGGTACATTTTAACAACTGAAGGTTATATATA
TTGCGAAGGTCGTAGGAAGAGGAATCTGATACTGTGGGTGGTATCAAATC
TCTTAAGTATTGTCGAGTTTTTCCGTGGATAATTTTGCAGAATAAGATAA
GAGACTGGACATGGCGGCGGTCAGATAACTTTTCCCATCCCAGTTCGGCG
AGTAGTGAAGTATACGAGGACCCCCTAATGGCACCAGCTACGGTTAAAGC
ACATTCATATTGTATTCGTTAGATGAGTTGAGAGTCTGAAGCAGTGCAAC
CGTGCCATACTACGCCACCATACTCGAGTAGGGGACGGATAAACGATTTG
TATATTGTTTCCAAAACTTCACGGGGCAGCTTGAATTTAAGTTTACTGAA
GGTTGAAACCTTTTCAGATGCATTGGCTAACATGTTAGAAATATGTGTAT
TCCAAGACATAGCAGATGTCAGATGGACCCCGATGTGTTTGTGACAGTCT
AAAGCAGATATTTTCTTACATCTACTACCAATGTATTTTGTAACTCATGA
ATGAATCCCTCAGGGGCCTATATCCGATATCTGCTGTTAATATTGATCAA
TGTTATTATAGGTATCGGTGTTGACGACATGTTCGTTATCGTGACTGCCT
GGAGCAACCTTTCCCCGGCGGACAGGAAGCGGGACAGACGCGAACAGGCG
GCGCTGGCGCTCAAACACGCGGGCGTCTCCATCACTGTCACCTCCATGAC
GGACGTGGTGGCGTTTGGCGTCGGAGCCTCCACGGTAGGCATAATTTTTC
TGAGTGTGAGACGTGCTTAGAATAGGCACCCTCCTGTAGCAGGGCCTAGT
CGCTCGGCAACAATGCCTCCAGCATCGACCCAGCTCTTCTGACCCAAGGT
TTCAGGTATTGGTGACGTTACTGACAGTTACTCATAAATAATTGATAGGC
TGTGCTTATTTGGCACAAACAGCCGTTATTTTGTTCTGAACCCAAAGTAG
CGAGTAACCTGATTGGCTGATAGCTTCCCAGCGACCTTTGTGGAATTCCG
TCAATCCCATCTATGCCTGGGTTGGTATGCGTGGAATGTTCCACGCATGC
GTAATAGTAACCAGCCATAGCTTCCATGGGAGATCCAACAATAAGTAGAC
ACATTCCAACCATTAACCGCGTGGCCTGACACCTTAGTTGCAATGTGTCA
AAATAGTTTTAAAATGTTAATCACCACTTGTTAGATAACTTTTGGTATGC
AATATAGTCTCTTAGGCATAACAAGTATACATTATGTCATAGAGACATGC
TTTGTTTAGTTGTTGAGTACATTCTAACATCACATCCAACAGATCCTGCC
AGCCCTGCAGTCGTTCTGTATCTACGCGGCCGTCAGCGTTTTCCTGGCGT
TTGTGTACTCATGTACACTGTTCTTCGCCGTGGTGTGCCTTGACTTTCAG
CGGTGGGAGGTAAGGATATCACAATCTCGCCGTTCTAGCCTGAAACTCTG
CCTTATTTGGCAACTCGGCAAAGTTGAAAAATGCATGCTATTCTCATTCT
CTGGATGACAAACGTATTTGCCCACAAGAAAGTGTTACAGCCATTCCAAA
ACCAACGTTTTTCTGTCTGTTACCTCTCTCAGGGCAATGCTGACCTGTTC
TTGTGAGTAATGCAGCTAGGTGTCGGTACTAACAGTTATTGTCCCAAAAC
GCAACGTATCAGCTATAGATATACATATACACAATACAATCATAAACGTA
CTGTATTTACATATATACAAAGATACTTAGTTCAATGTAATCCAGTGACT
TACAAACCTGATAAAACTAGTTACAGACACTCTCAATTTACATTTCAGAT
CCGATAAGTGGTTGACTGGTCATACGACATTCTCCGTGGATTTATGTACT
GATTTGTTTTTAAATCTAGAATCTTCGAAATGCAATCTGCTGTTGCTACA
AACACAGTCCCGGCTACTTG Coding sequence (CDS) from alignment at Sc0000051:1442901..1446620+ >transcript:BL96247_cuf1 ID=transcript:BL96247_cuf1|Name=transcript:BL96247_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2910bp|location=Sequence derived from alignment at Sc0000051:1442901..1446620+ (Branchiostoma lanceolatum)
ATCGACGAATCACGGGGAACTATCGAGAAGAACCTGAACCTGTTGGCTAT
CGGATACGTCATCCTGCTCGTTTATGCGACCATGTCGTTGGGCCAGTTTA
ATTGCATTGGGCAAAAGATCTACGTGTCGTTGACTGGCATGGTCTGCGTG
GGGCTGGCAGTCGCCGGGTCCATTGGAGTCTGCTCGGCGGTAGGAGCTGC
ATATGGGCCGCTTCACACAATCCTGCCTTTCCTCATCCTGGGTATCGGTG
TTGACGACATGTTCGTTATCGTGACTGCCTGGAGCAACCTTTCCCCGGCG
GACAGGAAGCGGGACAGACGCGAACAGGCGGCGCTGGCGCTCAAACACGC
GGGCGTCTCCATCACTGTCACCTCCATGACGGACGTGGTGGCGTTTGGCG
TCGGAGCCTCCACGATCCTGCCAGCCCTGCAGTCGTTCTGTATCTACGCG
GCCGTCAGCGTTTTCCTGGCGTTTGTGTACTCATGTACACTGTTCTTCGC
CGTGGTGTGCCTTGACTTTCAGCGGTGGGAGAATCTTCGAAATGCAATCT
GCTGTTGCTACAAACACAGTCCCGGCTACTTGATCGACGAATCACGGGGA
ACTATCGAGAAGAACCTGAACCTGTTGGCTATCGGATACGTCATCCTGCT
CGTTTATGCGACCATGTCGTTGGGCCAGTTTAATTGCATTGGGCAAAAGA
TCTACGTGTCGTTGACTGGCATGGTCTGCGTGGGGCTGGCAGTCGCCGGG
TCCATTGGAGTCTGCTCGGCGGTAGGAGCTGCATATGGGCCGCTTCACAC
AATCCTGCCTTTCCTCATCCTGGGTATCGGTGTTGACGACATGTTCGTTA
TCGTGACTGCCTGGAGCAACCTTTCCCCGGCGGACAGGAAGCGGGACAGA
CGCGAACAGGCGGCGCTGGCGCTCAAACACGCGGGCGTCTCCATCACTGT
CACCTCCATGACGGACGTGGTGGCGTTTGGCGTCGGAGCCTCCACGATCC
TGCCAGCCCTGCAGTCGTTCTGTATCTACGCGGCCGTCAGCGTTTTCCTG
GCGTTTGTGTACTCATGTACACTGTTCTTCGCCGTGGTGTGCCTTGACTT
TCAGCGGTGGGAGAATCTTCGAAATGCAATCTGCTGTTGCTACAAACACA
GTCCCGGCTACTTGATCGACGAATCACGGGGAACTATCGAGAAGAACCTG
AACCTGTTGGCTATCGGATACGTCATCCTGCTCGTTTATGCGACCATGTC
GTTGGGCCAGTTTAATTGCATTGGGCAAAAGATCTACGTGTCGTTGACTG
GCATGGTCTGCGTGGGGCTGGCAGTCGCCGGGTCCATTGGAGTCTGCTCG
GCGGTAGGAGCTGCATATGGGCCGCTTCACACAATCCTGCCTTTCCTCAT
CCTGGGTATCGGTGTTGACGACATGTTCGTTATCGTGACTGCCTGGAGCA
ACCTTTCCCCGGCGGACAGGAAGCGGGACAGACGCGAACAGGCGGCGCTG
GCGCTCAAACACGCGGGCGTCTCCATCACTGTCACCTCCATGACGGACGT
GGTGGCGTTTGGCGTCGGAGCCTCCACGATCCTGCCAGCCCTGCAGTCGT
TCTGTATCTACGCGGCCGTCAGCGTTTTCCTGGCGTTTGTGTACTCATGT
ACACTGTTCTTCGCCGTGGTGTGCCTTGACTTTCAGCGGTGGGAGAATCT
TCGAAATGCAATCTGCTGTTGCTACAAACACAGTCCCGGCTACTTGATCG
ACGAATCACGGGGAACTATCGAGAAGAACCTGAACCTGTTGGCTATCGGA
TACGTCATCCTGCTCGTTTATGCGACCATGTCGTTGGGCCAGTTTAATTG
CATTGGGCAAAAGATCTACGTGTCGTTGACTGGCATGGTCTGCGTGGGGC
TGGCAGTCGCCGGGTCCATTGGAGTCTGCTCGGCGGTAGGAGCTGCATAT
GGGCCGCTTCACACAATCCTGCCTTTCCTCATCCTGGGTATCGGTGTTGA
CGACATGTTCGTTATCGTGACTGCCTGGAGCAACCTTTCCCCGGCGGACA
GGAAGCGGGACAGACGCGAACAGGCGGCGCTGGCGCTCAAACACGCGGGC
GTCTCCATCACTGTCACCTCCATGACGGACGTGGTGGCGTTTGGCGTCGG
AGCCTCCACGATCCTGCCAGCCCTGCAGTCGTTCTGTATCTACGCGGCCG
TCAGCGTTTTCCTGGCGTTTGTGTACTCATGTACACTGTTCTTCGCCGTG
GTGTGCCTTGACTTTCAGCGGTGGGAGAATCTTCGAAATGCAATCTGCTG
TTGCTACAAACACAGTCCCGGCTACTTGATCGACGAATCACGGGGAACTA
TCGAGAAGAACCTGAACCTGTTGGCTATCGGATACGTCATCCTGCTCGTT
TATGCGACCATGTCGTTGGGCCAGTTTAATTGCATTGGGCAAAAGATCTA
CGTGTCGTTGACTGGCATGGTCTGCGTGGGGCTGGCAGTCGCCGGGTCCA
TTGGAGTCTGCTCGGCGGTAGGAGCTGCATATGGGCCGCTTCACACAATC
CTGCCTTTCCTCATCCTGGGTATCGGTGTTGACGACATGTTCGTTATCGT
GACTGCCTGGAGCAACCTTTCCCCGGCGGACAGGAAGCGGGACAGACGCG
AACAGGCGGCGCTGGCGCTCAAACACGCGGGCGTCTCCATCACTGTCACC
TCCATGACGGACGTGGTGGCGTTTGGCGTCGGAGCCTCCACGATCCTGCC
AGCCCTGCAGTCGTTCTGTATCTACGCGGCCGTCAGCGTTTTCCTGGCGT
TTGTGTACTCATGTACACTGTTCTTCGCCGTGGTGTGCCTTGACTTTCAG
CGGTGGGAGAATCTTCGAAATGCAATCTGCTGTTGCTACAAACACAGTCC
CGGCTACTTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000051 | genome | Sc0000051:1442901..1446620 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96247_cuf1 |
| Biotype | protein_coding |
|
