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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96180_cuf9 >transcript:BL96180_cuf9-protein ID=transcript:BL96180_cuf9-protein|Name=transcript:BL96180_cuf9|organism=Branchiostoma lanceolatum|type=polypeptide|length=327bp
DASSQQDPSSILHNDQIKLTVSQPCRTQRDSVYDVIESVIQQARAGSACI
RSSESAADPLTPSVQLTVECEKPSDAGDDVCSKEMGAGDEEATDGVYVCP
ICSRECSAPKYLKLHLLKHENDRQRPLDCDMCGKTFSTHQSMKLHRYTHT
GEKPFACKICNKHFRQAGTLKRHMVTHTGEQPHRCPHCPRHFSQRSSLTA
HLRLHTDQNAFLCVQCGKSFKTERYMKRHMIYHTDRLPFSCELCDKQFRT
RLNMRRHMLRIHLLATRKVCRCLTCGAEMQNPGALKNHMAVHNTGRKPYR
AFVCEVCGRRFQQRSKLKKHKQEKHGG Run BLAST on NCBI mRNA from alignment at Sc0000026:336118..340717- Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96180_cuf9 ID=transcript:BL96180_cuf9|Name=transcript:BL96180_cuf9|organism=Branchiostoma lanceolatum|type=mRNA|length=4600bp|location=Sequence derived from alignment at Sc0000026:336118..340717- (Branchiostoma lanceolatum)
TGACGCGTCATCACAGCAAGATCCTTCAAGCATACTCCATAATGATCAGA
TAAAACTGACTGTCTCACAGCCATGTAGGACACAGAGAGACTCAGTGTAC
GATGTGATAGAGAGTGTGATACAACAGGCAAGGGCCGGGTCTGCCTGTAT
ACGTAGCTCTGAGAGTGCAGCTGATCCATTGACACCATCTGTACAGTTAA
CCGTTGAGTGTGAGAAGCCATCTGATGCTGGTGATGATGTCTGCAGTAAG
GAGATGGGGTAGGTGTTACAGTTCAAATATATAAAGACATGTAGAGCAAT
TCAAAAGGAAAAACATGTATTTCCCTCATGAAATATATAATGTTATATAT
TTTAAGACCCTTCGTAATTTCTCTATATGTCATGCCTGGGCCTGATACGG
GTGTTCCAGACCGTGTGATAACTATCCAGATATATAGGGTTCGGGAGTGT
TATCACACAGGCTTCCATGGAATATTTCGAACGCATTTCGAGCGCGCCAG
TTGCGCGGCCGTCGGAAATTCGGATTCGGAGATTGGAATCAATGTTGCTA
CAGTTTCTTGTTCGAGGACACAAAACTCCCTCAACTTTTGGCGCATTCCG
CATTGAAATGTGTGTTTTCTTGGGTGCGTATGACCAAGGTATGACATAAA
TAAAATACAACACGTTGTATTCCGCATCACCCTCGGTCCCAGCCCTCCCG
CGGGTCGGATCGCCCTCCGGCCTACGGCCGTCGGGCGATCCGACCCGCGG
TCGGGCTGGTACCTCGGGTGATACGGAATACCCCGTGTTGTATTCTATAT
GTATCACATAGGGTTCGGGAGTTGTATCACACGGGCTTCCATAGAATATT
TCGAATGCATTTCGAGCGCGCCGGTTGCGCCGCCGTCGAAAATTCGAATA
CCGGATTCGGAGGTTGGAATCAATGTTGTTACAGTTTTGTGTTCGAGGAC
ACAAAACTCCCTCAACTTCTGGCGCATTCCGCATTGAAATGTGTGTTTTC
TCGGGTGGGTATGACCAAGGTATGACATAAATAAAATACAACACGTTGTA
TTCCGCATCACCCTCGGTCCCAGCCCTCCCGCGGGTCGGATCGCCCTCCG
GCCTACGGCCGTCGGGCGATCCGACCCGCGGTCGGGCTGGTACCTCGGGT
GATACGGAATACCCCGTGTTGTATTCTATATGTATATCATGCCTGGGCCT
GATACGGGTGTTCCGGACCGTGTGATAACTATCCGGATCACATAGGGTTC
GGGAGTGTTATCACACAGGCTTCCATGGAATATTTCGAACGCATTTCGAG
CGCGCCAGTTGCGCGGCCGTCGGAAATTCGGATTNTAGGGTTCGGGAGGG
TTATCACACAGGCTTCCATAGAATATTTCGAACGCATTTCGAGCGCGTCG
GTTGCGCGGCCGTCGGAAATTCGAATACCGGATTCGGAGATTGGAATCAA
TGTTGCTACAGTTTCTTGTTCGAGGACACAAAACTCCCTCAACTTCTGGC
GCATTCCGCATTGAAATGTGTGTTTTCTCGGGTGGGTATGACCAAGGTAT
GACATAAATAAAATACAACACGTTGTATTCCGCATCACCCTCGGTCCCAG
CCCTCCCGCGGGTCGGATCGCCCTTTGGCCTATGGCCATCGGGCGATCCG
ACCCGCGGTCGGGCTGGTACCTCGGGTGATACGGAATTTACCCCATGTTG
TATTCTATATGTACATTATACTATAGTGAAAGAAGTGTACTTTTTAACCT
TATCAAAGAAAAATTCCCATATTTCGAACATCTAAATGCAACAGACAAAT
TCATATTTTTATTCCGCCTGGATAATCCTTGTATAAGAAATATTCTCTGT
TCATTCATTTACACATGTACAAAGAAACGAGAAGAAGTCAACTCTACTGG
ACTAGCTTAGTTTAATAACACGTTTGTCTACTCTATATGTTTACAGCTTG
TATTGTTGTATTTATGTCCTTGTATGTTCCATGTGTTAAGTTAGACGACT
GGTATCTAGCCCCTCGGGGCATGAATGCACAATAAAGGTCATTCATTCAT
TCATTAATTAAAAAAATATTATCAAGTCCTGTTTAATCTCATTTCAGTGC
TGGAGATGAGGAGGCCACGGATGGAGTTTACGTCTGCCCCATCTGTTCCC
GCGAGTGCTCGGCGCCGAAGTACCTGAAGCTGCACCTGCTGAAGCACGAG
AACGACCGACAGCGGCCGCTGGACTGCGACATGTGCGGGAAAACCTTCAG
CACCCACCAGAGCATGAAGCTGCACAGATACACACATACAGGTACTAGTA
GGAAGGTGTCTGTCGTGGTGTCGTGTGGCGTGTTCGGCTCAGAGTCAAGT
GGTCCCGGGTTCAAATCGTGCCGTGTCACCGATCTTGTGCCCTTGGGAAA
GGCACTTTACACGACTTTCCCAACATGCCAGAATGGTCGTCATCAAGACC
GTGGGCATTAAAAAACAGAAACAGAAACATCCATTAGGCCACACTGATGT
TTTGGATACTTTTTGAGGTGATGGGGTTCCTGGTAGAGATTTCATCCTGC
CCCTGACCAGATATGGTATGAGAACAAAGGCAGAGTGTGGGGTAGACAGG
GAGAGGGGTAGATGGTCTTAAAATCACTAGAATGTAGTGGGAAGAATTTT
GAGAATAAAGAGCCTAGTTGTAGTTTATGTTGGAGTCTGTATGACTGAGA
AGTTCACGACCAGTTCCTGACATACACCAATTGTCCAAATGTCTTGAGAC
TTTTTTAAGTGGGCCTTCATCATCATCATAATTTGTAACATTGATCTGAC
TTGCCAGTCATTGAATGGTCTGAATAACAATGAGATTGTTAGACATTGAA
AGATTTTTACACGCTTTCCTAAGTGGAGAAAATATGATGAACCTGTACAT
TGTAAAGATTGATGAACATCTGTCTGATCCAGTTCCTTTCACACCGAACA
GGGGAGAAGCCGTTTGCCTGCAAAATCTGCAACAAACATTTCCGTCAGGC
GGGGACGCTGAAGCGACACATGGTGACCCACACGGGCGAGCAGCCCCACC
GCTGTCCGCACTGCCCGCGGCACTTCTCCCAGCGCAGCAGCCTGACAGCA
CATCTCAGGTTACACACAGATCAGAACGCCTTCCTCTGTGTGCAGTGTGG
CAAGAGCTTCAAGACTGAAAGGTGGGGAAAATAGTTTTTATCTGCAGTTT
GGCAACTTCCAATGCCTGATATTAGGTCAACTTTGGCTCCATCACAGCAA
ACCACAATGCAATACAGCGGTACTTATTTTTTGTAGTCTTTTCCAAAAGC
TGCATCCCTAGCAGCTGCATCTCTAGCCGTGATTCTTCCTGGTTCATTCC
CTTAAAGGGGCATATTGTAGAATTTGGTAGGCAAAAATTACAAATTTTCA
GAATTTGAAAAATCTACATTCAGATTCACATTTTTAACTTATTTGCAACT
TATTTCCAACATAATTCCGCTCATTTTGTCACATTTCCATCATTACTAAA
CGCCGAAAACGCAAAACCCGAAAATCGAAGCCAAATTATGCTTTTTTTTC
TGTTCAACGAATATCACTGCTTCGGAAGTTTGTTACTGGTAAGGTATTGC
TGCTACTAATGTTTTTCCTCCCTTCAACAGGTACATGAAGAGACACATGA
TCTACCACACGGACAGACTCCCATTCTCGTGCGAGCTGTGCGACAAACAG
TTCCGCACGCGGCTCAACATGCGGCGCCACATGCTACGCATCCACCTCCT
TGCCACCAGGAAAGTCTGCAGGTACGTAGTCATCAGTCAAAACCTTATTC
GTTGTTTTATTTTCATAGCCCTCAGACACACAGGTCTGGCCCCCACATGT
TTATCTGTGCTGGAGTCCTTTAAACCCCCTTCACACCCTCTAGCACGCAA
GCTCAGTCCCATCCCTGAGTCCACAGGTAGTGTGTGTAGTCCAGTGGTTA
GCAACCCTGCCTCTAGAAGCTGTGAGTTTGATCCTGATTGTGTCGCTCAC
CCGACATGCACGCTACCCAAAAGGGTTGCAGTCCTTATAATAGAACAGGC
CGTTAAGCCATGGTACTCTAGTACTGTTCATTGTGCTTGTCTAAAAGAGA
ATTTCCCCAGTACAATGAACCTGTAAATATTGTACATAATGTCTGTCTTC
TCTGTCACGACCAGTTGAAGAGTAGCTCTTTAGTAGCATGGTATCTAAAC
CTATTATAGCTTCTGAGCCTTGGCTGATGACTTGGGAACTATGATAGGTA
AACTGGATTGATATCACTTTCACTTTTTTATTCAAGGCACAAATATCATA
CAGTACAAAATAACAGTAGAATGTAAAGTCGAACATGATTTTAGTCAAAC
CACCCCAAGCCATAAGAAGATGCCAGGTGTATGGGATCTAGAAACTGTAC
ACTGTATTGATCACTTTCCCTTTTTTTTCAGGTGCCTGACGTGTGGGGCT
GAGATGCAGAACCCCGGCGCGCTAAAGAACCACATGGCCGTGCACAACAC
GGGAAGAAAACCGTACCGCGCCTTTGTGTGCGAGGTCTGCGGCCGGCGGT
TCCAGCAGCGCTCCAAACTGAAGAAGCACAAGCAGGAGAAGCACGGGGGC
Coding sequence (CDS) from alignment at Sc0000026:336118..340717- >transcript:BL96180_cuf9 ID=transcript:BL96180_cuf9|Name=transcript:BL96180_cuf9|organism=Branchiostoma lanceolatum|type=CDS|length=4905bp|location=Sequence derived from alignment at Sc0000026:336118..340717- (Branchiostoma lanceolatum)
GACGCGTCATCACAGCAAGATCCTTCAAGCATACTCCATAATGATCAGAT
AAAACTGACTGTCTCACAGCCATGTAGGACACAGAGAGACTCAGTGTACG
ATGTGATAGAGAGTGTGATACAACAGGCAAGGGCCGGGTCTGCCTGTATA
CGTAGCTCTGAGAGTGCAGCTGATCCATTGACACCATCTGTACAGTTAAC
CGTTGAGTGTGAGAAGCCATCTGATGCTGGTGATGATGTCTGCAGTAAGG
AGATGGGTGCTGGAGATGAGGAGGCCACGGATGGAGTTTACGTCTGCCCC
ATCTGTTCCCGCGAGTGCTCGGCGCCGAAGTACCTGAAGCTGCACCTGCT
GAAGCACGAGAACGACCGACAGCGGCCGCTGGACTGCGACATGTGCGGGA
AAACCTTCAGCACCCACCAGAGCATGAAGCTGCACAGATACACACATACA
GGGGAGAAGCCGTTTGCCTGCAAAATCTGCAACAAACATTTCCGTCAGGC
GGGGACGCTGAAGCGACACATGGTGACCCACACGGGCGAGCAGCCCCACC
GCTGTCCGCACTGCCCGCGGCACTTCTCCCAGCGCAGCAGCCTGACAGCA
CATCTCAGGTTACACACAGATCAGAACGCCTTCCTCTGTGTGCAGTGTGG
CAAGAGCTTCAAGACTGAAAGGTACATGAAGAGACACATGATCTACCACA
CGGACAGACTCCCATTCTCGTGCGAGCTGTGCGACAAACAGTTCCGCACG
CGGCTCAACATGCGGCGCCACATGCTACGCATCCACCTCCTTGCCACCAG
GAAAGTCTGCAGGTGCCTGACGTGTGGGGCTGAGATGCAGAACCCCGGCG
CGCTAAAGAACCACATGGCCGTGCACAACACGGGAAGAAAACCGTACCGC
GCCTTTGTGTGCGAGGTCTGCGGCCGGCGGTTCCAGCAGCGCTCCAAACT
GAAGAAGCACAAGCAGGAGAAGCACGGGGGCGACGCGTCATCACAGCAAG
ATCCTTCAAGCATACTCCATAATGATCAGATAAAACTGACTGTCTCACAG
CCATGTAGGACACAGAGAGACTCAGTGTACGATGTGATAGAGAGTGTGAT
ACAACAGGCAAGGGCCGGGTCTGCCTGTATACGTAGCTCTGAGAGTGCAG
CTGATCCATTGACACCATCTGTACAGTTAACCGTTGAGTGTGAGAAGCCA
TCTGATGCTGGTGATGATGTCTGCAGTAAGGAGATGGGTGCTGGAGATGA
GGAGGCCACGGATGGAGTTTACGTCTGCCCCATCTGTTCCCGCGAGTGCT
CGGCGCCGAAGTACCTGAAGCTGCACCTGCTGAAGCACGAGAACGACCGA
CAGCGGCCGCTGGACTGCGACATGTGCGGGAAAACCTTCAGCACCCACCA
GAGCATGAAGCTGCACAGATACACACATACAGGGGAGAAGCCGTTTGCCT
GCAAAATCTGCAACAAACATTTCCGTCAGGCGGGGACGCTGAAGCGACAC
ATGGTGACCCACACGGGCGAGCAGCCCCACCGCTGTCCGCACTGCCCGCG
GCACTTCTCCCAGCGCAGCAGCCTGACAGCACATCTCAGGTTACACACAG
ATCAGAACGCCTTCCTCTGTGTGCAGTGTGGCAAGAGCTTCAAGACTGAA
AGGTACATGAAGAGACACATGATCTACCACACGGACAGACTCCCATTCTC
GTGCGAGCTGTGCGACAAACAGTTCCGCACGCGGCTCAACATGCGGCGCC
ACATGCTACGCATCCACCTCCTTGCCACCAGGAAAGTCTGCAGGTGCCTG
ACGTGTGGGGCTGAGATGCAGAACCCCGGCGCGCTAAAGAACCACATGGC
CGTGCACAACACGGGAAGAAAACCGTACCGCGCCTTTGTGTGCGAGGTCT
GCGGCCGGCGGTTCCAGCAGCGCTCCAAACTGAAGAAGCACAAGCAGGAG
AAGCACGGGGGCGACGCGTCATCACAGCAAGATCCTTCAAGCATACTCCA
TAATGATCAGATAAAACTGACTGTCTCACAGCCATGTAGGACACAGAGAG
ACTCAGTGTACGATGTGATAGAGAGTGTGATACAACAGGCAAGGGCCGGG
TCTGCCTGTATACGTAGCTCTGAGAGTGCAGCTGATCCATTGACACCATC
TGTACAGTTAACCGTTGAGTGTGAGAAGCCATCTGATGCTGGTGATGATG
TCTGCAGTAAGGAGATGGGTGCTGGAGATGAGGAGGCCACGGATGGAGTT
TACGTCTGCCCCATCTGTTCCCGCGAGTGCTCGGCGCCGAAGTACCTGAA
GCTGCACCTGCTGAAGCACGAGAACGACCGACAGCGGCCGCTGGACTGCG
ACATGTGCGGGAAAACCTTCAGCACCCACCAGAGCATGAAGCTGCACAGA
TACACACATACAGGGGAGAAGCCGTTTGCCTGCAAAATCTGCAACAAACA
TTTCCGTCAGGCGGGGACGCTGAAGCGACACATGGTGACCCACACGGGCG
AGCAGCCCCACCGCTGTCCGCACTGCCCGCGGCACTTCTCCCAGCGCAGC
AGCCTGACAGCACATCTCAGGTTACACACAGATCAGAACGCCTTCCTCTG
TGTGCAGTGTGGCAAGAGCTTCAAGACTGAAAGGTACATGAAGAGACACA
TGATCTACCACACGGACAGACTCCCATTCTCGTGCGAGCTGTGCGACAAA
CAGTTCCGCACGCGGCTCAACATGCGGCGCCACATGCTACGCATCCACCT
CCTTGCCACCAGGAAAGTCTGCAGGTGCCTGACGTGTGGGGCTGAGATGC
AGAACCCCGGCGCGCTAAAGAACCACATGGCCGTGCACAACACGGGAAGA
AAACCGTACCGCGCCTTTGTGTGCGAGGTCTGCGGCCGGCGGTTCCAGCA
GCGCTCCAAACTGAAGAAGCACAAGCAGGAGAAGCACGGGGGCGACGCGT
CATCACAGCAAGATCCTTCAAGCATACTCCATAATGATCAGATAAAACTG
ACTGTCTCACAGCCATGTAGGACACAGAGAGACTCAGTGTACGATGTGAT
AGAGAGTGTGATACAACAGGCAAGGGCCGGGTCTGCCTGTATACGTAGCT
CTGAGAGTGCAGCTGATCCATTGACACCATCTGTACAGTTAACCGTTGAG
TGTGAGAAGCCATCTGATGCTGGTGATGATGTCTGCAGTAAGGAGATGGG
TGCTGGAGATGAGGAGGCCACGGATGGAGTTTACGTCTGCCCCATCTGTT
CCCGCGAGTGCTCGGCGCCGAAGTACCTGAAGCTGCACCTGCTGAAGCAC
GAGAACGACCGACAGCGGCCGCTGGACTGCGACATGTGCGGGAAAACCTT
CAGCACCCACCAGAGCATGAAGCTGCACAGATACACACATACAGGGGAGA
AGCCGTTTGCCTGCAAAATCTGCAACAAACATTTCCGTCAGGCGGGGACG
CTGAAGCGACACATGGTGACCCACACGGGCGAGCAGCCCCACCGCTGTCC
GCACTGCCCGCGGCACTTCTCCCAGCGCAGCAGCCTGACAGCACATCTCA
GGTTACACACAGATCAGAACGCCTTCCTCTGTGTGCAGTGTGGCAAGAGC
TTCAAGACTGAAAGGTACATGAAGAGACACATGATCTACCACACGGACAG
ACTCCCATTCTCGTGCGAGCTGTGCGACAAACAGTTCCGCACGCGGCTCA
ACATGCGGCGCCACATGCTACGCATCCACCTCCTTGCCACCAGGAAAGTC
TGCAGGTGCCTGACGTGTGGGGCTGAGATGCAGAACCCCGGCGCGCTAAA
GAACCACATGGCCGTGCACAACACGGGAAGAAAACCGTACCGCGCCTTTG
TGTGCGAGGTCTGCGGCCGGCGGTTCCAGCAGCGCTCCAAACTGAAGAAG
CACAAGCAGGAGAAGCACGGGGGCGACGCGTCATCACAGCAAGATCCTTC
AAGCATACTCCATAATGATCAGATAAAACTGACTGTCTCACAGCCATGTA
GGACACAGAGAGACTCAGTGTACGATGTGATAGAGAGTGTGATACAACAG
GCAAGGGCCGGGTCTGCCTGTATACGTAGCTCTGAGAGTGCAGCTGATCC
ATTGACACCATCTGTACAGTTAACCGTTGAGTGTGAGAAGCCATCTGATG
CTGGTGATGATGTCTGCAGTAAGGAGATGGGTGCTGGAGATGAGGAGGCC
ACGGATGGAGTTTACGTCTGCCCCATCTGTTCCCGCGAGTGCTCGGCGCC
GAAGTACCTGAAGCTGCACCTGCTGAAGCACGAGAACGACCGACAGCGGC
CGCTGGACTGCGACATGTGCGGGAAAACCTTCAGCACCCACCAGAGCATG
AAGCTGCACAGATACACACATACAGGGGAGAAGCCGTTTGCCTGCAAAAT
CTGCAACAAACATTTCCGTCAGGCGGGGACGCTGAAGCGACACATGGTGA
CCCACACGGGCGAGCAGCCCCACCGCTGTCCGCACTGCCCGCGGCACTTC
TCCCAGCGCAGCAGCCTGACAGCACATCTCAGGTTACACACAGATCAGAA
CGCCTTCCTCTGTGTGCAGTGTGGCAAGAGCTTCAAGACTGAAAGGTACA
TGAAGAGACACATGATCTACCACACGGACAGACTCCCATTCTCGTGCGAG
CTGTGCGACAAACAGTTCCGCACGCGGCTCAACATGCGGCGCCACATGCT
ACGCATCCACCTCCTTGCCACCAGGAAAGTCTGCAGGTGCCTGACGTGTG
GGGCTGAGATGCAGAACCCCGGCGCGCTAAAGAACCACATGGCCGTGCAC
AACACGGGAAGAAAACCGTACCGCGCCTTTGTGTGCGAGGTCTGCGGCCG
GCGGTTCCAGCAGCGCTCCAAACTGAAGAAGCACAAGCAGGAGAAGCACG
GGGGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000026 | genome | Sc0000026:336118..340717 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96180_cuf9 |
| Biotype | protein_coding |
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