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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96152_evm1 >transcript:BL96152_evm1-protein ID=transcript:BL96152_evm1-protein|Name=transcript:BL96152_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=403bp
MATLKMKAVIGMDADLCVVVSGLPDGVNSRALREHFMSRDGDFGIKQLVT
FPKLGTALVEVLTTEGAADVLVNETPLQLRGLRSLLPKDEDVTTLLGEMR
AWDELFHLVKFLKSLPRPRDHVEHERRSGAYRLPKGIGDAADLDMDADAC
VVVSGTPGDVSSNWFHLWISQAKCTRQAVVFPATGTALMEFFTPGWAANF
LEDQNRLLKETGLRAKKVAHLFFPNEDTITSEGQLPQLKQQLESAKQNLR
SKEQQLQSVTTENEHQKTVQMSLKKQLTREKQAKGCALELCQRLEQDNVH
LKNQAEADRRENARLKQQISASIDNDCSYDLSRSPRGTVVIINNIHFEDM
KTRDGAEGDPDRLREVFESLGFTVVTFTDLDHNKMVTVMKDQGKXHRRDL
HRP Run BLAST on NCBI mRNA from alignment at Sc0000813:8220..11078- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96152_evm1 ID=transcript:BL96152_evm1|Name=transcript:BL96152_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=2859bp|location=Sequence derived from alignment at Sc0000813:8220..11078- (Branchiostoma lanceolatum)
ATGGCCACCCTCAAAATGAAGGCAGTAATTGGAATGGACGCCGACCTCTG
TGTTGTTGTGAGCGGGCTGCCGGACGGCGTGAACAGCCGGGCGCTGAGGG
AGCACTTCATGTCTAGGGACGGTGACTTCGGAATAAAACAGCTGGTCACG
TTCCCAAAACTAGGAACTGCACTGGTAGAGGTTTTGACGACGGAAGGTGC
GTACATTTCTTTTTGCCATACTTGGGATGGACCGGAATAACGTTCGATAC
GGTAATTCCGGTCCGTATCTTTTTTCAGCATGTTCAAACAATTGAAAATC
TCAAAACAACAAGCTTCTAACACCACCCAAAATGACAAAAATGTTGTTAG
AACCGATTTATGCCGTTCTTCAAGTATATTGGAAAGCTTTATTTTTTCAG
TTTACAATTTTCTACCCCTATTTTCCCCGTTAACGAGGATGGCAGTTTTG
TTGACACTGTCTGATACGAGACAAAGATCTGAGTTCTAAGTCATGTCGAT
ATCGTTCCTGTAGGCGCTGCCGACGTGCTGGTAAATGAGACACCGCTGCA
GCTGAGAGGGCTGCGGTCACTGCTTCCTAAAGATGAAGACGTGACAACCT
TGCTGGGAGAGATGCGTGCCTGGGACGAGCTTTTCCACCTGGTCAAATTC
CTCAAGTCTCTGCCCCGTCCGCGTGATCACGTTGAACATGAACGTAGATC
AGGTAAATGGATACTTTTATCATATGATCTCTAGATTTCACATTTAGGAC
ATTCCATCTTGACCGACCCACCATTAAAGGAGGCGGCAAGCAAGGGACAG
ACGTGTAACAAAAGTCGTCACAATCTCTTCATGATTGCGAAACAAGATCA
GTAAAATTTGAAAAGAGGAGTCCCCGCACAAAACCTACACCAAAAATGCG
CAGGTTTCACGACTAACGTTAGAAGGGCTGTTCACGATACCCGGTGAAAG
TATGTTTTATTCAGTAGAATTGAATAACTGTTATCTGATCATTGCCTAAT
TGTCCGTTCGACTTCACTAATTTCAAAACAATCTATCTTGTTCATTGCTC
CAGGCGCATATCGGCTGCCAAAGGGAATTGGTGACGCGGCTGACCTCGAT
ATGGATGCAGACGCCTGTGTTGTTGTGAGCGGGACTCCGGGTGATGTGAG
CAGCAACTGGTTTCACCTTTGGATCAGTCAGGCCAAATGCACACGACAAG
CGGTCGTGTTTCCCGCAACAGGAACCGCTCTGATGGAGTTCTTCACGCCA
GGGTGTAAGTACACACATGTGTATTCACGAAGTGTACATCATATAATCAT
AACGCTATTATAACAGGCCCAATTTTGTAATCATCTTGCGCGGTTCAGAA
TTTGTTCCTCGGTGAGCTTAATTCAAACCATTGCGGCTTTATCAATTGGA
CGTCTATGTTTTCAATAAGTTTTTGTCTCAAAGGAGAGCTACACACAAAC
ATTGAAAACCCTACTATACGATGCTAAGTGTACCCAGAAGTCAAGTATAT
TATAGTAGTGTTTAGATTTTTTGTGAGGCTTTCAGAGCGAATCTCTGATA
TCTCTGCTAGGTTGAGGTTGTCAACGTGTTTGATGTATTGTGCATGTTCT
AACGATGGGTATTGATACTGTTATGTTAAACTGTTAAACAAAGGTTGATC
ATATTGTCCATACAGGGGCAGCCAACTTTCTCGAAGACCAGAACCGACTG
TTGAAAGAGACAGGGCTGCGAGCAAAAAAAGTGGCGCATCTGTTTTTTCC
AAACGAAGACACGATCACTTCAGAGGGACAGCTGCCGCAGCTCAAGCAAC
AACTTGAGTCCGCCAAGCAGAACCTGAGGAGCAAAGAACAGCAGCTTCAG
AGCGTGACGACAGAAAATGAACACCAAAAGACTGTGCAAATGAGCCTGAA
GAAACAGCTCACGCGTGAAAAACAAGCTAAAGGATGTGCGCTTGAGCTGT
GTCAAAGGCTGGAACAAGACAACGTCCATCTAAAGAATCAAGCAGAAGCT
GACAGGAGGGAAAATGCTCGGCTGAAACAGCAGATCTCCGCGTCCATCGA
CAACGACTGTTCGTACGACCTGAGCCGATCTCCCCGCGGGACCGTCGTCA
TCATCAACAACATCCACTTTGAGGACATGAAAACCCGAGATGGGGCTGAA
GGAGACCCAGGTGAGAGTTTCCATCAGAATATGAATGGATGGGTGAATGA
AGAGAGAGTGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGATAG
GGAGATTGCTGGATCCGATGGATGTTGGTATGTGTGAGTGTCAGATAAAT
AGCTATCTAGCTAGCTATCTAGCTAGCTAGCTAGATAGATAGATAGATAG
ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT
AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG
ATAGATAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGATAGGGAGAT
TGCTGGATCCGATGGATGTTGGTATGTGTGAGTGTCAGATAAATAGCTAT
CTAGCTAGCTATCTAGCTAGCTAGCTAAATAGATAGATAGATAGATAGAT
AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG
ATAGATAGATAGATAGATAGATAGATAGATGGATAGAACAACCTTCCTTC
ATATTCGATTATAATTTATTTCTTACAGATCGCCTCCGAGAAGTCTTTGA
AAGCCTTGGATTCACCGTCGTGACCTTCACTGACCTTGACCACAACAAGA
TGGTAACCGTGATGAAGGACCAAGGAAAGNTTCACCGTCGTGACCTTCAC
CGACCTTGA Coding sequence (CDS) from alignment at Sc0000813:8220..11078- >transcript:BL96152_evm1 ID=transcript:BL96152_evm1|Name=transcript:BL96152_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=6060bp|location=Sequence derived from alignment at Sc0000813:8220..11078- (Branchiostoma lanceolatum)
ATGGCCACCCTCAAAATGAAGGCAGTAATTGGAATGGACGCCGACCTCTG
TGTTGTTGTGAGCGGGCTGCCGGACGGCGTGAACAGCCGGGCGCTGAGGG
AGCACTTCATGTCTAGGGACGGTGACTTCGGAATAAAACAGCTGGTCACG
TTCCCAAAACTAGGAACTGCACTGGTAGAGGTTTTGACGACGGAAGGCGC
TGCCGACGTGCTGGTAAATGAGACACCGCTGCAGCTGAGAGGGCTGCGGT
CACTGCTTCCTAAAGATGAAGACGTGACAACCTTGCTGGGAGAGATGCGT
GCCTGGGACGAGCTTTTCCACCTGGTCAAATTCCTCAAGTCTCTGCCCCG
TCCGCGTGATCACGTTGAACATGAACGTAGATCAGGCGCATATCGGCTGC
CAAAGGGAATTGGTGACGCGGCTGACCTCGATATGGATGCAGACGCCTGT
GTTGTTGTGAGCGGGACTCCGGGTGATGTGAGCAGCAACTGGTTTCACCT
TTGGATCAGTCAGGCCAAATGCACACGACAAGCGGTCGTGTTTCCCGCAA
CAGGAACCGCTCTGATGGAGTTCTTCACGCCAGGGTGGGCAGCCAACTTT
CTCGAAGACCAGAACCGACTGTTGAAAGAGACAGGGCTGCGAGCAAAAAA
AGTGGCGCATCTGTTTTTTCCAAACGAAGACACGATCACTTCAGAGGGAC
AGCTGCCGCAGCTCAAGCAACAACTTGAGTCCGCCAAGCAGAACCTGAGG
AGCAAAGAACAGCAGCTTCAGAGCGTGACGACAGAAAATGAACACCAAAA
GACTGTGCAAATGAGCCTGAAGAAACAGCTCACGCGTGAAAAACAAGCTA
AAGGATGTGCGCTTGAGCTGTGTCAAAGGCTGGAACAAGACAACGTCCAT
CTAAAGAATCAAGCAGAAGCTGACAGGAGGGAAAATGCTCGGCTGAAACA
GCAGATCTCCGCGTCCATCGACAACGACTGTTCGTACGACCTGAGCCGAT
CTCCCCGCGGGACCGTCGTCATCATCAACAACATCCACTTTGAGGACATG
AAAACCCGAGATGGGGCTGAAGGAGACCCAGATCGCCTCCGAGAAGTCTT
TGAAAGCCTTGGATTCACCGTCGTGACCTTCACTGACCTTGACCACAACA
AGATGGTAACCGTGATGAAGGACCAAGGAAAGNTTCACCGTCGTGACCTT
CACCGACCTTGAATGGCCACCCTCAAAATGAAGGCAGTAATTGGAATGGA
CGCCGACCTCTGTGTTGTTGTGAGCGGGCTGCCGGACGGCGTGAACAGCC
GGGCGCTGAGGGAGCACTTCATGTCTAGGGACGGTGACTTCGGAATAAAA
CAGCTGGTCACGTTCCCAAAACTAGGAACTGCACTGGTAGAGGTTTTGAC
GACGGAAGGCGCTGCCGACGTGCTGGTAAATGAGACACCGCTGCAGCTGA
GAGGGCTGCGGTCACTGCTTCCTAAAGATGAAGACGTGACAACCTTGCTG
GGAGAGATGCGTGCCTGGGACGAGCTTTTCCACCTGGTCAAATTCCTCAA
GTCTCTGCCCCGTCCGCGTGATCACGTTGAACATGAACGTAGATCAGGCG
CATATCGGCTGCCAAAGGGAATTGGTGACGCGGCTGACCTCGATATGGAT
GCAGACGCCTGTGTTGTTGTGAGCGGGACTCCGGGTGATGTGAGCAGCAA
CTGGTTTCACCTTTGGATCAGTCAGGCCAAATGCACACGACAAGCGGTCG
TGTTTCCCGCAACAGGAACCGCTCTGATGGAGTTCTTCACGCCAGGGTGG
GCAGCCAACTTTCTCGAAGACCAGAACCGACTGTTGAAAGAGACAGGGCT
GCGAGCAAAAAAAGTGGCGCATCTGTTTTTTCCAAACGAAGACACGATCA
CTTCAGAGGGACAGCTGCCGCAGCTCAAGCAACAACTTGAGTCCGCCAAG
CAGAACCTGAGGAGCAAAGAACAGCAGCTTCAGAGCGTGACGACAGAAAA
TGAACACCAAAAGACTGTGCAAATGAGCCTGAAGAAACAGCTCACGCGTG
AAAAACAAGCTAAAGGATGTGCGCTTGAGCTGTGTCAAAGGCTGGAACAA
GACAACGTCCATCTAAAGAATCAAGCAGAAGCTGACAGGAGGGAAAATGC
TCGGCTGAAACAGCAGATCTCCGCGTCCATCGACAACGACTGTTCGTACG
ACCTGAGCCGATCTCCCCGCGGGACCGTCGTCATCATCAACAACATCCAC
TTTGAGGACATGAAAACCCGAGATGGGGCTGAAGGAGACCCAGATCGCCT
CCGAGAAGTCTTTGAAAGCCTTGGATTCACCGTCGTGACCTTCACTGACC
TTGACCACAACAAGATGGTAACCGTGATGAAGGACCAAGGAAAGNTTCAC
CGTCGTGACCTTCACCGACCTTGAATGGCCACCCTCAAAATGAAGGCAGT
AATTGGAATGGACGCCGACCTCTGTGTTGTTGTGAGCGGGCTGCCGGACG
GCGTGAACAGCCGGGCGCTGAGGGAGCACTTCATGTCTAGGGACGGTGAC
TTCGGAATAAAACAGCTGGTCACGTTCCCAAAACTAGGAACTGCACTGGT
AGAGGTTTTGACGACGGAAGGCGCTGCCGACGTGCTGGTAAATGAGACAC
CGCTGCAGCTGAGAGGGCTGCGGTCACTGCTTCCTAAAGATGAAGACGTG
ACAACCTTGCTGGGAGAGATGCGTGCCTGGGACGAGCTTTTCCACCTGGT
CAAATTCCTCAAGTCTCTGCCCCGTCCGCGTGATCACGTTGAACATGAAC
GTAGATCAGGCGCATATCGGCTGCCAAAGGGAATTGGTGACGCGGCTGAC
CTCGATATGGATGCAGACGCCTGTGTTGTTGTGAGCGGGACTCCGGGTGA
TGTGAGCAGCAACTGGTTTCACCTTTGGATCAGTCAGGCCAAATGCACAC
GACAAGCGGTCGTGTTTCCCGCAACAGGAACCGCTCTGATGGAGTTCTTC
ACGCCAGGGTGGGCAGCCAACTTTCTCGAAGACCAGAACCGACTGTTGAA
AGAGACAGGGCTGCGAGCAAAAAAAGTGGCGCATCTGTTTTTTCCAAACG
AAGACACGATCACTTCAGAGGGACAGCTGCCGCAGCTCAAGCAACAACTT
GAGTCCGCCAAGCAGAACCTGAGGAGCAAAGAACAGCAGCTTCAGAGCGT
GACGACAGAAAATGAACACCAAAAGACTGTGCAAATGAGCCTGAAGAAAC
AGCTCACGCGTGAAAAACAAGCTAAAGGATGTGCGCTTGAGCTGTGTCAA
AGGCTGGAACAAGACAACGTCCATCTAAAGAATCAAGCAGAAGCTGACAG
GAGGGAAAATGCTCGGCTGAAACAGCAGATCTCCGCGTCCATCGACAACG
ACTGTTCGTACGACCTGAGCCGATCTCCCCGCGGGACCGTCGTCATCATC
AACAACATCCACTTTGAGGACATGAAAACCCGAGATGGGGCTGAAGGAGA
CCCAGATCGCCTCCGAGAAGTCTTTGAAAGCCTTGGATTCACCGTCGTGA
CCTTCACTGACCTTGACCACAACAAGATGGTAACCGTGATGAAGGACCAA
GGAAAGNTTCACCGTCGTGACCTTCACCGACCTTGAATGGCCACCCTCAA
AATGAAGGCAGTAATTGGAATGGACGCCGACCTCTGTGTTGTTGTGAGCG
GGCTGCCGGACGGCGTGAACAGCCGGGCGCTGAGGGAGCACTTCATGTCT
AGGGACGGTGACTTCGGAATAAAACAGCTGGTCACGTTCCCAAAACTAGG
AACTGCACTGGTAGAGGTTTTGACGACGGAAGGCGCTGCCGACGTGCTGG
TAAATGAGACACCGCTGCAGCTGAGAGGGCTGCGGTCACTGCTTCCTAAA
GATGAAGACGTGACAACCTTGCTGGGAGAGATGCGTGCCTGGGACGAGCT
TTTCCACCTGGTCAAATTCCTCAAGTCTCTGCCCCGTCCGCGTGATCACG
TTGAACATGAACGTAGATCAGGCGCATATCGGCTGCCAAAGGGAATTGGT
GACGCGGCTGACCTCGATATGGATGCAGACGCCTGTGTTGTTGTGAGCGG
GACTCCGGGTGATGTGAGCAGCAACTGGTTTCACCTTTGGATCAGTCAGG
CCAAATGCACACGACAAGCGGTCGTGTTTCCCGCAACAGGAACCGCTCTG
ATGGAGTTCTTCACGCCAGGGTGGGCAGCCAACTTTCTCGAAGACCAGAA
CCGACTGTTGAAAGAGACAGGGCTGCGAGCAAAAAAAGTGGCGCATCTGT
TTTTTCCAAACGAAGACACGATCACTTCAGAGGGACAGCTGCCGCAGCTC
AAGCAACAACTTGAGTCCGCCAAGCAGAACCTGAGGAGCAAAGAACAGCA
GCTTCAGAGCGTGACGACAGAAAATGAACACCAAAAGACTGTGCAAATGA
GCCTGAAGAAACAGCTCACGCGTGAAAAACAAGCTAAAGGATGTGCGCTT
GAGCTGTGTCAAAGGCTGGAACAAGACAACGTCCATCTAAAGAATCAAGC
AGAAGCTGACAGGAGGGAAAATGCTCGGCTGAAACAGCAGATCTCCGCGT
CCATCGACAACGACTGTTCGTACGACCTGAGCCGATCTCCCCGCGGGACC
GTCGTCATCATCAACAACATCCACTTTGAGGACATGAAAACCCGAGATGG
GGCTGAAGGAGACCCAGATCGCCTCCGAGAAGTCTTTGAAAGCCTTGGAT
TCACCGTCGTGACCTTCACTGACCTTGACCACAACAAGATGGTAACCGTG
ATGAAGGACCAAGGAAAGNTTCACCGTCGTGACCTTCACCGACCTTGAAT
GGCCACCCTCAAAATGAAGGCAGTAATTGGAATGGACGCCGACCTCTGTG
TTGTTGTGAGCGGGCTGCCGGACGGCGTGAACAGCCGGGCGCTGAGGGAG
CACTTCATGTCTAGGGACGGTGACTTCGGAATAAAACAGCTGGTCACGTT
CCCAAAACTAGGAACTGCACTGGTAGAGGTTTTGACGACGGAAGGCGCTG
CCGACGTGCTGGTAAATGAGACACCGCTGCAGCTGAGAGGGCTGCGGTCA
CTGCTTCCTAAAGATGAAGACGTGACAACCTTGCTGGGAGAGATGCGTGC
CTGGGACGAGCTTTTCCACCTGGTCAAATTCCTCAAGTCTCTGCCCCGTC
CGCGTGATCACGTTGAACATGAACGTAGATCAGGCGCATATCGGCTGCCA
AAGGGAATTGGTGACGCGGCTGACCTCGATATGGATGCAGACGCCTGTGT
TGTTGTGAGCGGGACTCCGGGTGATGTGAGCAGCAACTGGTTTCACCTTT
GGATCAGTCAGGCCAAATGCACACGACAAGCGGTCGTGTTTCCCGCAACA
GGAACCGCTCTGATGGAGTTCTTCACGCCAGGGTGGGCAGCCAACTTTCT
CGAAGACCAGAACCGACTGTTGAAAGAGACAGGGCTGCGAGCAAAAAAAG
TGGCGCATCTGTTTTTTCCAAACGAAGACACGATCACTTCAGAGGGACAG
CTGCCGCAGCTCAAGCAACAACTTGAGTCCGCCAAGCAGAACCTGAGGAG
CAAAGAACAGCAGCTTCAGAGCGTGACGACAGAAAATGAACACCAAAAGA
CTGTGCAAATGAGCCTGAAGAAACAGCTCACGCGTGAAAAACAAGCTAAA
GGATGTGCGCTTGAGCTGTGTCAAAGGCTGGAACAAGACAACGTCCATCT
AAAGAATCAAGCAGAAGCTGACAGGAGGGAAAATGCTCGGCTGAAACAGC
AGATCTCCGCGTCCATCGACAACGACTGTTCGTACGACCTGAGCCGATCT
CCCCGCGGGACCGTCGTCATCATCAACAACATCCACTTTGAGGACATGAA
AACCCGAGATGGGGCTGAAGGAGACCCAGATCGCCTCCGAGAAGTCTTTG
AAAGCCTTGGATTCACCGTCGTGACCTTCACTGACCTTGACCACAACAAG
ATGGTAACCGTGATGAAGGACCAAGGAAAGNTTCACCGTCGTGACCTTCA
CCGACCTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000813 | genome | Sc0000813:8220..11078 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96152_evm1 |
| Biotype | protein_coding |
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