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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96080_evm2 >transcript:BL96080_evm2-protein ID=transcript:BL96080_evm2-protein|Name=transcript:BL96080_evm2|organism=Branchiostoma lanceolatum|type=polypeptide|length=225bp
MWVLCSKRPDTDLLSGGVVKLTDVNKTCSCCGLHTQGDKELANFLSKEIE
TEKDNLQEAPKVKDFEISNKGAEVTLTRNFDGEIVTIDFNVNLSVDDESM
DEEAEQPQMVSRPRFTVELKKSGGSSLSLNCSFTGDEGTAEGEEEVDVFQ
IDEVTLHEGEGEWQESSYIAGADNMDGTLYDLLMTTLEERGVDNEFAAKL
VTLSTSHEHRQYIKFLEDLKSFVSK Run BLAST on NCBI mRNA from alignment at Sc0000404:142613..145389- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96080_evm2 ID=transcript:BL96080_evm2|Name=transcript:BL96080_evm2|organism=Branchiostoma lanceolatum|type=mRNA|length=2777bp|location=Sequence derived from alignment at Sc0000404:142613..145389- (Branchiostoma lanceolatum)
ATGTGGGTCCTCTGCAGCAAGAGACCGGACACTGACCTCTTGAGCGGTGG
AGTGGTCAAGCTGACCGATGTGAACAAGACCTGCAGTTGCTGTGGGCTAC
ATACTCAAGGTGTGTCTCGTTTTTGTTTTGGAAACATTTGTGTACTCGTG
GTGAAAAATAGTGTCATGTTTCATCATCACCGTTCACAGACTGTGGGGGG
GGGGGGGTATTGGGGTTTTCTCTCCATATTTTAGTAAATTACTTATTGGT
TAATATTTTGTCCTATTCTTTACAAGAATTTTTTTCATTGATTGTGAAAT
GTAAAATGTCTTTGAGGGACTTAGCAGTTGTTTTACACAAAAGTTTTGTA
ATAATACTGCTTCCCTTTTGACTAAATTTGAATTTGAGTACTGTAAGGTC
GTGTAGTTTCACGGGGACATAATTCCACTGTAGGAGGGGGAAGAAGTTTT
CACAGTGTTTTGCATTTGCACGTTGAACATGTTTGTAAAGTACAGTATGC
ATATTCACTGTGTCACAATGTCGTAGTGGATAGATCACTGCAAACATTTC
AAGATTTACAGTGACTGTCTTACAGTGTCTGATTTACGTGTGTAACTAAA
GAAGCCATTTCTGTTGCAGGGGATAAAGAACTTGCAAACTTCCTCTCAAA
GGAGATTGAGACAGAGAAAGACAACTTGCAAGAAGCCCCAAAAGTGAAAG
ATTTCGAAATCTCCAACAAAGGGGCAGAGGTCACACTCACCAGGAACTTT
GATGGAGAAATGTAAGCCTGTCTGCATTATCGCTGTAGATTTAAATACAG
AGTCAGACCTTTGACACCTGAAAAGACAAAAAATAAGTAATTGCAAGACT
TTTAAAAAATCCCTCATCCCATCAGATCTGCTTGGAGATAAGGACATGTC
AGCTGTTGGAAGAACAATACATATATGGGAATGATAATTTTCATGCCCAA
GTATGGCCTGTATTGGTACTTCCAACAATGCTTTATGCTAAATTCAGGAA
TATACAGCAGCTGCTCATGTCTCTACATTTTCACAGGCCGGCTGCGCTTT
ATTCTAGATTCAGCCACCTATTATGGTTAACAATGTACATTGTACATTAT
GAATTATGCAGTTAGGAATATTAGTCCAAAGAAATAATGATAGTAATGGT
ACCCTATGTCATACATACATACCTTTCAGGGGAAAACTATAGCTTTTAGC
ACCAAATCACTATAATGCTTTTTTTGTTTTATTTTCTTTCTCAGTGTTAC
CATTGACTTTAATGTCAACCTGTCTGTGGATGATGAGTCTATGGATGAGG
AGGCTGAACAGCCACAGGTATGTGGTTTTCCACATTACACATGACCTTCA
CCACTAAACAGACTCCATGGCCATATTTGGATTTGTTACATGTGATATGT
TGCAGCATTGTGTTGAGCAAAATACATGTAAGAAGTGTTTGACATTATAT
TTGATAATGTCCAGCTGCAATTTTGTGTACTCAAAAGTCTCATTGTACAT
GTCCCACTGTGCCACTAGAAACCACCTTCTATGACTGTTAACTTATTAGC
GGACTTCTTGTTTCATTCTCAAAGCAGCTTTTGTATCCCCTGCTTCTTCT
GTTGGGTAATCACTTAGTCCTCACTATCACACTATCAGTGAGTTGAGCTT
GACTCAATGATATTTCTGATATAGGGCTGAGAGATGCTGTTCTAGTCCTA
TTCTGTATTCATAAAAATAGGATTGATGCCACTCACTCACACTCACTATC
TGGTTGATAGGAAATATTGTCTCATGATCACAATTTCAAATTCCAACTGA
ATCTAAGAAATAAGTTTTGTTACCCTGTTCTCAGATGGTGTCCAGACCCA
GGTTTACAGTGGAGCTGAAGAAGTCTGGCGGTTCCAGCTTAAGTCTGAAC
TGTTCCTTTACTGGTGACGAGGGGACTGCAGAGGGGGAGGAGGAGGTGGA
TGTGTTCCAGATCGATGAGGTGACTCTACACGAGGGGGAGGGGGAGTGGC
AGGAGAGCAGCTACATCGCTGGAGCAGACAACATGGACGGGGTGAGAACC
AGTTCTCTTGTTAGCAACATTGTAATTTCCAAGCAGATGTTGGAAGGCAA
AATCTAACATTTTGGTAGCTCCCATTGCTGCCACAAAGAGCCATTGTAAC
AAAAACAGAGCCAGGAAAATGTCATAATTGTATTATGTGGTGTGTTTTTG
TTTCTTATGAAAAAAAAAAGGTTAGATTATATGTGGTATATAGGGCTGTG
CCCATCTGTGTTTCCTTACCCTTGGGCTACTCACTTGTGCAAGCACATCA
GAAACTAGTCCATTGGTATTTATGTCTGTTCAACTTCCATACTCTTTCCC
ATAAATATGCTGAGTAGTGAAGCAGTGTGTACATCATTTAAGTCTTTGGT
ATAGCTCAGTCAAGGAATCAAACCTGCAACCTACCACATGCATAATGAAC
ACTGTACCCACTAGGCTTTTGCTGCGGCAGGGAAAAGATAACCAAAACAT
TGTTGTCGGCTAACCTTCTTTCAATAGGCCTACGTACACTGTGGTAAATA
TGCATAATTATATGGTAATATAGGAAAAAGCTTAACTCTTAACTTTTCTC
ATTTTGTGATCCTTTCTGTTGTTCCCCCAGACCCTGTATGACCTGTTGAT
GACCACCTTGGAAGAGCGTGGAGTAGACAACGAGTTTGCAGCAAAGCTGG
TGACTTTGTCCACATCCCACGAGCACAGGCAATACATCAAGTTCCTGGAA
GACTTGAAATCATTCGTCTCCAAATAG Coding sequence (CDS) from alignment at Sc0000404:142613..145389- >transcript:BL96080_evm2 ID=transcript:BL96080_evm2|Name=transcript:BL96080_evm2|organism=Branchiostoma lanceolatum|type=CDS|length=3390bp|location=Sequence derived from alignment at Sc0000404:142613..145389- (Branchiostoma lanceolatum)
ATGTGGGTCCTCTGCAGCAAGAGACCGGACACTGACCTCTTGAGCGGTGG
AGTGGTCAAGCTGACCGATGTGAACAAGACCTGCAGTTGCTGTGGGCTAC
ATACTCAAGGGGATAAAGAACTTGCAAACTTCCTCTCAAAGGAGATTGAG
ACAGAGAAAGACAACTTGCAAGAAGCCCCAAAAGTGAAAGATTTCGAAAT
CTCCAACAAAGGGGCAGAGGTCACACTCACCAGGAACTTTGATGGAGAAA
TTGTTACCATTGACTTTAATGTCAACCTGTCTGTGGATGATGAGTCTATG
GATGAGGAGGCTGAACAGCCACAGATGGTGTCCAGACCCAGGTTTACAGT
GGAGCTGAAGAAGTCTGGCGGTTCCAGCTTAAGTCTGAACTGTTCCTTTA
CTGGTGACGAGGGGACTGCAGAGGGGGAGGAGGAGGTGGATGTGTTCCAG
ATCGATGAGGTGACTCTACACGAGGGGGAGGGGGAGTGGCAGGAGAGCAG
CTACATCGCTGGAGCAGACAACATGGACGGGACCCTGTATGACCTGTTGA
TGACCACCTTGGAAGAGCGTGGAGTAGACAACGAGTTTGCAGCAAAGCTG
GTGACTTTGTCCACATCCCACGAGCACAGGCAATACATCAAGTTCCTGGA
AGACTTGAAATCATTCGTCTCCAAATAGATGTGGGTCCTCTGCAGCAAGA
GACCGGACACTGACCTCTTGAGCGGTGGAGTGGTCAAGCTGACCGATGTG
AACAAGACCTGCAGTTGCTGTGGGCTACATACTCAAGGGGATAAAGAACT
TGCAAACTTCCTCTCAAAGGAGATTGAGACAGAGAAAGACAACTTGCAAG
AAGCCCCAAAAGTGAAAGATTTCGAAATCTCCAACAAAGGGGCAGAGGTC
ACACTCACCAGGAACTTTGATGGAGAAATTGTTACCATTGACTTTAATGT
CAACCTGTCTGTGGATGATGAGTCTATGGATGAGGAGGCTGAACAGCCAC
AGATGGTGTCCAGACCCAGGTTTACAGTGGAGCTGAAGAAGTCTGGCGGT
TCCAGCTTAAGTCTGAACTGTTCCTTTACTGGTGACGAGGGGACTGCAGA
GGGGGAGGAGGAGGTGGATGTGTTCCAGATCGATGAGGTGACTCTACACG
AGGGGGAGGGGGAGTGGCAGGAGAGCAGCTACATCGCTGGAGCAGACAAC
ATGGACGGGACCCTGTATGACCTGTTGATGACCACCTTGGAAGAGCGTGG
AGTAGACAACGAGTTTGCAGCAAAGCTGGTGACTTTGTCCACATCCCACG
AGCACAGGCAATACATCAAGTTCCTGGAAGACTTGAAATCATTCGTCTCC
AAATAGATGTGGGTCCTCTGCAGCAAGAGACCGGACACTGACCTCTTGAG
CGGTGGAGTGGTCAAGCTGACCGATGTGAACAAGACCTGCAGTTGCTGTG
GGCTACATACTCAAGGGGATAAAGAACTTGCAAACTTCCTCTCAAAGGAG
ATTGAGACAGAGAAAGACAACTTGCAAGAAGCCCCAAAAGTGAAAGATTT
CGAAATCTCCAACAAAGGGGCAGAGGTCACACTCACCAGGAACTTTGATG
GAGAAATTGTTACCATTGACTTTAATGTCAACCTGTCTGTGGATGATGAG
TCTATGGATGAGGAGGCTGAACAGCCACAGATGGTGTCCAGACCCAGGTT
TACAGTGGAGCTGAAGAAGTCTGGCGGTTCCAGCTTAAGTCTGAACTGTT
CCTTTACTGGTGACGAGGGGACTGCAGAGGGGGAGGAGGAGGTGGATGTG
TTCCAGATCGATGAGGTGACTCTACACGAGGGGGAGGGGGAGTGGCAGGA
GAGCAGCTACATCGCTGGAGCAGACAACATGGACGGGACCCTGTATGACC
TGTTGATGACCACCTTGGAAGAGCGTGGAGTAGACAACGAGTTTGCAGCA
AAGCTGGTGACTTTGTCCACATCCCACGAGCACAGGCAATACATCAAGTT
CCTGGAAGACTTGAAATCATTCGTCTCCAAATAGATGTGGGTCCTCTGCA
GCAAGAGACCGGACACTGACCTCTTGAGCGGTGGAGTGGTCAAGCTGACC
GATGTGAACAAGACCTGCAGTTGCTGTGGGCTACATACTCAAGGGGATAA
AGAACTTGCAAACTTCCTCTCAAAGGAGATTGAGACAGAGAAAGACAACT
TGCAAGAAGCCCCAAAAGTGAAAGATTTCGAAATCTCCAACAAAGGGGCA
GAGGTCACACTCACCAGGAACTTTGATGGAGAAATTGTTACCATTGACTT
TAATGTCAACCTGTCTGTGGATGATGAGTCTATGGATGAGGAGGCTGAAC
AGCCACAGATGGTGTCCAGACCCAGGTTTACAGTGGAGCTGAAGAAGTCT
GGCGGTTCCAGCTTAAGTCTGAACTGTTCCTTTACTGGTGACGAGGGGAC
TGCAGAGGGGGAGGAGGAGGTGGATGTGTTCCAGATCGATGAGGTGACTC
TACACGAGGGGGAGGGGGAGTGGCAGGAGAGCAGCTACATCGCTGGAGCA
GACAACATGGACGGGACCCTGTATGACCTGTTGATGACCACCTTGGAAGA
GCGTGGAGTAGACAACGAGTTTGCAGCAAAGCTGGTGACTTTGTCCACAT
CCCACGAGCACAGGCAATACATCAAGTTCCTGGAAGACTTGAAATCATTC
GTCTCCAAATAGATGTGGGTCCTCTGCAGCAAGAGACCGGACACTGACCT
CTTGAGCGGTGGAGTGGTCAAGCTGACCGATGTGAACAAGACCTGCAGTT
GCTGTGGGCTACATACTCAAGGGGATAAAGAACTTGCAAACTTCCTCTCA
AAGGAGATTGAGACAGAGAAAGACAACTTGCAAGAAGCCCCAAAAGTGAA
AGATTTCGAAATCTCCAACAAAGGGGCAGAGGTCACACTCACCAGGAACT
TTGATGGAGAAATTGTTACCATTGACTTTAATGTCAACCTGTCTGTGGAT
GATGAGTCTATGGATGAGGAGGCTGAACAGCCACAGATGGTGTCCAGACC
CAGGTTTACAGTGGAGCTGAAGAAGTCTGGCGGTTCCAGCTTAAGTCTGA
ACTGTTCCTTTACTGGTGACGAGGGGACTGCAGAGGGGGAGGAGGAGGTG
GATGTGTTCCAGATCGATGAGGTGACTCTACACGAGGGGGAGGGGGAGTG
GCAGGAGAGCAGCTACATCGCTGGAGCAGACAACATGGACGGGACCCTGT
ATGACCTGTTGATGACCACCTTGGAAGAGCGTGGAGTAGACAACGAGTTT
GCAGCAAAGCTGGTGACTTTGTCCACATCCCACGAGCACAGGCAATACAT
CAAGTTCCTGGAAGACTTGAAATCATTCGTCTCCAAATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000404 | genome | Sc0000404:142613..145389 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96080_evm2 |
| Biotype | protein_coding |
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