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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL95961_evm2 >transcript:BL95961_evm2-protein ID=transcript:BL95961_evm2-protein|Name=transcript:BL95961_evm2|organism=Branchiostoma lanceolatum|type=polypeptide|length=264bp
MPVHKAGASSFHFIVPLNVGGHHYTSTLPVLRKYEESMLAAMFSGRHIVV
KDKDDRYFIERDGSNFGHILNFLRNSSRLPPPDKVKDVYHEALYYGIKPL
ADILRRHRSIHEEEEVARWAEQCPAAQEKADEIADLVLKKFADTLRRTSR
VVLQFDQEPSWESVHLTGSTGETIGGYYKPYAFQQDEGHKDHKCPQPEIS
MGEMSEKEREKTLSFLDHHFEKLGYKVDVVAGECREAVWSQKEGSGMDSI
TIYCAKQIYTLTLT Run BLAST on NCBI mRNA from alignment at Sc0000244:264091..271062+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL95961_evm2 ID=transcript:BL95961_evm2|Name=transcript:BL95961_evm2|organism=Branchiostoma lanceolatum|type=mRNA|length=6972bp|location=Sequence derived from alignment at Sc0000244:264091..271062+ (Branchiostoma lanceolatum)
ATGCCTGTACATAAAGCGGGCGCTTCGTCGGTAGGTTTGGTGGGGTTTGG
TATGGTGGGTCATTATATGTTGACAGAAGCTCAACACTCTGCCGCAGCAT
AGGCAAGGTTGACGGTTCATTATCTTAATTTAGATGTTTAGATAGCGGGG
ATGAGTCAGGTGGACAAGCCAGCGGGCTTTGTTACTAGTCTGTCTGGGTG
GAACGTTTGCTTGCAGAATTTTATGGCGTTGTTGTCAACTTGTGTCGGGC
GTATTTTTTTTTAAATTTGGCCAAAGTTTAACTGCACCTGGACTTCATTA
GGGCCTACCTTTTTCATTTTAGTCGTACCAGTGCTTACTGTTACCACAAT
ATTCTTCAATCGAGTATATTAGTGATGCATGCAATGTGTTTTCTAAGATT
TGTTTGTTTGTTTGTTTGTTTAGCATTTGTTCATTCATGAAAGGTCAAGT
CGACCCTCAGGTCGCTTTTCATTGAGATTATGAGTAAGGAGGTAAGGGCC
AGAGAAAATATGCCAATGACGCAGATTCTTCATTACTTAAGTCATAAATG
ATCTATAAACATAGAATGGGATTCTTACACATACATGTTACCACAAAACA
AAGTGAAAGTCGGCATGTGGACCGTGTAGGATTTGTGTGGCGAGAAGTAC
GTCTAGTCTGGCACGCAAACTACAGATAGGGGTAACTTATAACTCTAGGA
CTGCGCCTTATGGACAGCTTGTATAACTCTAGGACTAGGGACAGCTTGTA
TAACTCTGGGACTAGGGACAGCTTGTATAACTCTGGGACTGCGCCTTAGG
GGCAGCTTGTATAACTCTAGGACTAGGGACAGCTTGTATAACTCTAGGAC
TAGGGACAGCTTGTATAACTCTAGGACAGGACTGCGCTTATGGACAGTTT
GTATAACTCTGCGCCATAACCCTGCCAAGGACCATGGACGAAGCAATAGA
TGAATACATTCTTAGTGCTCTATTAGGTAAATCTGACAGTGTAGCAGGTA
ACAGGTACAGTTACCTAGTTATGTAACTACATACCAAACTAGTTATGTAC
TTGTTATGTCAAGGACATGACATTTTCAAAACGTTTTTGTGTCTCAATTG
TATTGTTTCGATGTGGGCCCACTTTTTATGTTCTTTTTTTTTCCTTCCTA
TTGTATACGTACCGTCTGGTGTTGGATTTTTTTTTCAGTCACAACGTTGG
TACCAAGGGATACTGTCATGTCATGTTCTCGTAGGGAGCGTCGTCTGGAT
CTATCTGCCTCTTTCCATGCAGCCAGAGAACATCGAGTTGTTTCTTGAGC
TCCTGATGCAATGAAGTGAAATGTACGATAATTGTGTTTTAACAGTTTCA
CTTCATCGTCCCCCTGAACGTTGGCGGCCATCACTACACCAGCACCCTGC
CGGTACTGCGCAAGTACGAGGAGTCCATGCTGGCGGCCATGTTCAGCGGC
CGCCATATTGTTGTGAAGGACAAAGACGATCGCTACTTCATCGAACGAGA
CGGCAGCAACTTCGGCCACATCCTGAACTTCCTGCGCAACAGCAGCAGGC
TGCCTCCTCCAGATAAGGTGAGGCCAAAATCTATAACCTTTGTTTAGGAC
ATGTGAGATTGAGCTCTACAGAATAGGTGAACAAGGAACCTGTCTAAAAA
GAAGGCTGCAAACGTCCACCTACATTCATGTGTAGGAAGGACGAGGGCAC
CACTGCTCATTGCCGATGTTTCTTTTCGTTATTTCGACCAATTCACTCCC
ATTATTCCCGCCCAGGTCAAAGACGTCTACCATGAGGCGCTCTACTACGG
GATCAAACCCCTCGCCGACATCCTCCGCCGCCACAGGTCGATCCACGAGG
AGGAGGAGGTCGCCAGGTGGGCCGAGCAGTGCCCCGCCGCCCAGGAGAAG
GCCGACGAGATCGCCGACCTGGTCCTGAANATGCCCGACGCAAATTTCCC
TTTCGTGAACGGTCGTTGCCTTTAAGAGCGGTCGTTGCCATTTCTAGGAA
CGGACGTTGCCAATTTCAACGGACCTGCTCCTGAAGAAGTTTGCGGACAC
CCTGCGCAGGACGAGCCGCGTGGTTCTCCAGTTCGACCAGGAGCCGAGCT
GGGAGGCGGTGCTTCTGAGGGGAAGCACGGGTAAGACTCTTGGCAACTAC
TACCAGCCGTACGACTTCGAAGAAGACAAGGGTCACAAGGACCACAAGTG
TCCCCTGCCAGACATATCCATGGGGGAGATGTCAGAGAAGGGGAGGGAGG
AGACGCTGAGTTTCTTGGATCATCACTTCGAGAAGCTTGGCTATAAGGTG
GAAGTTGTCGTCGGGGAGTGTCGGGAAGCGGTGTGGTCCCAAAAGATCAC
CTGGCCCGGCGACGGGCGGGACTGCATAACCGTCTACTGTGGCAAGCAGA
TCTACACACTCACCTTTACTTGAGGTGGAACAACAACAACAGCGCGCGCG
CTTGCCGTGCGTGCCGTCGGCGCCTTCTTTGATTTTCCGGGGTTCCCGGG
GTTTTCTTAACCGTTCCAGTGCCTTCCCTCACTACCGTGCGTAACATAAT
GAGGACTGAATCTCGGTATAGACGTTTTGTTCTTAATATTTAAGAGTAAT
GTTCTCATTAAGATTTTTTAGAATAGAAAAAACAATTTGTATCATCATGG
CACCTGCTGCACAGGTGTACTAGGTGAATAATAAAAGGAGAAAAACGTTA
CAAAGCTTATGCCTTTATAAGTTCGTATCTGGGGTTCTGAACACATTAAA
GTGTGGATAGATAATTATTGCGTGTAACTTATTTAGACAGGCAAACAATC
CTGAGGTACAGTTCACAGGGAGCACTCGCACACTCAAACTTATGCGACGG
TCACATTCGTCGTAGGATCGACACTGACAGAACCAACCGCCGACGAGCCT
TTTTCATCACAGACAGCTTTATGTTCATGGCAGGACTTGTGCACAACTGT
CCAACGAGTAAAGGCGCAAACTGCAGCCTACGGCGCACTTTGCGTCTGTG
TGTAAACAATTGGGTCAATGACCGCATATACAGACATTGCGGTGAGAAGG
TTTCAATAAAGGGTCAATGACCCAGCTTTCCCCAGGTTGTTTGTGGGATG
GGTATATGTTACTGGCCAGGCGTTATTGCTCCGGTAACACCTGGAAAAGT
GGGATCAACGATGTTATCATGTGGCCAATTAAAACTGTCACAGACAATAA
TATTGTAAAAAATTAAAAACTGGTAGGTTAGGAAAGGGGGTGTAACGGTC
GAGTGTGGTTGTTTTAAAGCAGTGTAGAATAGGGTTATTGACCTCTTTCA
CTTTTTCCAATGAGTAGCCTTTTCATCACTGCAACAACGAACCGACTGCA
TGACCCATACACACAAAAAATTACATCACGTCGCATTTCTGACCGCAATC
CAAGGGGCGCATCTGTAGTCCTCAAAAAAGAAGATCAATCAAACAAGTAC
TTTAAGTACACGTCGTGTTTTTAACGCAGTGAACATCACTGCTAATGCTA
GGGTCACATTTCAAAAGCGGGGCCCGGTCGGGCAGCTCGCGGGGACGAAA
AATATGATATAAAAGACAAAAGAAAGACACAAAACGTGAAAAATGACTCC
TGACCATAAAAGGTGTATTTTCTTGATATGCACTTTTTATTTTTCGTTTT
CGCAAACAGCCCGGCCGGGCCCCGGCTTGGAAATGTGACCCTAGCATAAG
CGGAGGCAGAGTTGGCCAGTTTGTATCATTATCTCTCTATGTGAGAAAAG
AACAGAGGCATTCTACTTTCCCTGGTGGCTGTGTTATTTTCGATGACATA
TGACGCACTTTTGGTAAATCATTGCATTTATTGGGTCAATGACCGCACAC
ACAGGTTAGGAGGTTGAAATAAATGGTCAATGACCCACCTTTGCCCAGGT
TGTTTGTGAGATGGATATAGGTCACAAGCCATGCATTATTGCACCGGTAA
GGCTAGGGTCACATTTCCAAGCCGGGGCCCGACCAGGCTGTTTGAGAAAA
CAAAGAATAAAAAAATGCATATCAAGAATATACATAGCGTATGGTAAGGA
AAATTTTTAAAAATTTTTGTGCCTTTTTTTGTCTTTTATATAATAGTTTT
CGTTCCCACAAGCTGCCCGGCCGGGTTCCGGCTTGGAAATGTGACCCTAG
CATAACACCTGACAAAATCTGCAAAAGTGGGCTATTAACGTTGTTATCAT
ATGGCCAATTCAAATTGACACGGACAATGATGTTGTTAAAAAAGTAAAAT
GGTATATTTGGAAAGAGGGTATAACGGACAGTGTAAATCAGGGTTATTGA
TCTCTTTCGCTTTTTCCTAATGAGCATTCATTGGTGATTTAGCTAGTAAA
CATACACTCACTGTATGTTTACACAAAGGTTTAGTGTATTTGCTTCACCA
TCAAACTGGATAAATGGACATGCACAGGAAGAGTGGGAATTCCCTTAATA
CACGTTGCAAGGAAGAACAACCCTAGATTATGCAGATATGAGATCAGCAA
AGTTAAGAAAATATCTTGAGTGGATGAATCGAATTCATAGCCAGAGGACA
AATCGACTATGAGCAGACCGACGGACCCTTAATTTAGATCAATGCGCATN
TATAATAGTTTTCGTTCCCACAAGCTGCCCGGCCGGGTTCCGGCTTGGAA
ATGTGACCCTAGCATAACACCTGACAAAATCTGCAAAAGTGGGCTATTAA
CGTTGTTATCATATGGCCAATTCAAATTGACACGGACAATGATGTTGTTA
AAAAAGTAAAATGGTATATTTGGAAAGAGGGTATAACGGACAGTGTAAAT
CAGGGTTATTGATCTCTTTCGCTTTTTCCTAATGAGCATTCATTGGTGAT
TTAGCTAGTAAACATACACTCACTGTATGTTTACATAAAGGTTTAGTGTA
TTTGCTTCACCATCAAACTGGATAAATGGACATGCACAGGAAGAGTGGAA
TTCCCTTAATACACGTTGCAAGGAAGAACAAACCTAGATTATGTAAATAT
GAGATCAGCAAAGTTAAGAAAATGTATTGAGTGGATGAATTGAATTCATA
GCCAGAGGACAAATCGACTATGAGCAAACCGACCGCCCTTAATTTAGATC
AATGCGCATGCACAGTGACAATAACAGTACAATCCGCTTATATGTTGCTA
TATATGGAACAATTTCATCCGAGGACAAAGGTTGCCATGGAGTCAGCGTC
GAATGTACCGGAATTGGAGATAAGGGTCTATTAGCCTGTATTTACACAAG
CTCTCGGCCGGAGGTTACTGACCCCCACCCAAGAGGGTTAAAGGCGGTCA
CGGAAACCGGCTGGACACTAGGAGCTCGATTCGTCAGGCTAAGGGTCTAT
ATATAGGAGGACGTGCATCTTTCTCCCAGACAGCTCTGACCTCACTGAGT
GGACAACATGCAGACATCTCCCGCCACCTCTACACGTCAGCAGACGAAAC
AAGTTCTCACCAGGCCTCTCCAGCGTCCTAGAAACGGACCACACAATGCA
GACTCTCCTTTGGTAGGTCCTTTGGGATTCAGATATTTTGAAAGAAGCAC
TCTGTAATGCCAGGGTTCTTGATTAATGGTCTACCAGGCGCGACCACAGA
ATGTTGTAACCCCCCAAAAATCCCGACTCGTAGGGCCAGTCTAAATAACT
GCTACAAATTTGCCGAACAAACCAGCGGGCCTGTTATCACGGCCCCTGGT
CGAACTGGAGAACCACGCGGTTCGTCCTGCATAGGGTATCTTCAAACGAC
GGCCTGCTCCCGGGCGGCGGGGCACTGCTCAGCCGACCTGGCGACCACCT
TCTCCTCGTGGACCGACCTGTGGCGGCGGAGGATGTCGGCGAGGGGTCTA
ATCCCACAGTTGAGAGCCTCCTGGTAGACATCCTTGACCTGGGCGAGAAC
AACGGGAGTTACTAGTTGAGTTTTATTGGTTTGATTGTCCAGGGGTACTG
ATACCCTTCCCACGGTATGACTTTCCTAGCCAATGAAATGCATTATTTCG
TTTTCACAGTTTCACTTCATCGTCCCCCTGAACGTTGGCGGCCATCACTA
CACCAGCACCCTGCCGGTACTGCGCAAGTACGAGGAGTCCATGCTGGCGG
CCATGTTCAGCGGCCGCCATATTGTTGTGAAGGACAAAGACGATCGCTAC
TTCATCGAACGAGACGGCAGCAACTTCGGCCACATCCTGAACTTCCTGCG
CAACAGCAGCAGGCTGCCTCCTCCAGATAAGGTGAGGCCAAAATCTATAA
CCTTTGTTTAGGACATGTGAGATTGAGCTCTACAGAATAGGTGAACAAGG
AACCTGTCTAAAAAGAAGGCTGCAAACGTCCACCTACATTCATGTGTAGG
AAGGACGAGGGCACCACTGCTCATTGCCGATGTTTCTTTTCGTTATTTCG
ACCAATTCACTCCCATTATTCCCGCCCAGGTCAAAGACGTCTACCATGAG
GCGCTCTACTACGGGATCAAACCCCTCGCCGACATCCTCCGCCGCCACAG
GTCGATCCACGAGGAGGAGGAGGTCGCCAGGTGGGCCGAGCAGTGCCCCG
CCGCCCAGGAGAAGGCCGACGAGATCGCCGACCTGGTCCTGAAGAAGTTT
GCGGACACCCTGCGCAGGACGAGCCGCGTGGTTCTCCAGTTCGACCAGGA
GCCGAGCTGGGAGTCCGTGCACCTGACGGGAAGCACGGGCGAGACTATCG
GCGGCTACTACAAGCCCTACGCCTTCCAGCAAGACGAGGGTCACAAGGAC
CACAAGTGTCCCCAGCCAGAAATATCCATGGGAGAGATGTCGGAGAAGGA
GAGGGAGAAGACGCTGAGTTTCTTGGATCATCACTTCGAGAAGCTTGGCT
ATAAGGTGGACGTCGTCGCCGGAGAGTGTCGGGAAGCGGTGTGGTCCCAA
AAAGAAGGCAGTGGAATGGACTCCATAACCATCTACTGTGCCAAGCAGAT
CTACACACTCACCTTAACTTGA Coding sequence (CDS) from alignment at Sc0000244:264091..271062+ >transcript:BL95961_evm2 ID=transcript:BL95961_evm2|Name=transcript:BL95961_evm2|organism=Branchiostoma lanceolatum|type=CDS|length=2385bp|location=Sequence derived from alignment at Sc0000244:264091..271062+ (Branchiostoma lanceolatum)
ATGCCTGTACATAAAGCGGGCGCTTCGTCGTTTCACTTCATCGTCCCCCT
GAACGTTGGCGGCCATCACTACACCAGCACCCTGCCGGTACTGCGCAAGT
ACGAGGAGTCCATGCTGGCGGCCATGTTCAGCGGCCGCCATATTGTTGTG
AAGGACAAAGACGATCGCTACTTCATCGAACGAGACGGCAGCAACTTCGG
CCACATCCTGAACTTCCTGCGCAACAGCAGCAGGCTGCCTCCTCCAGATA
AGGTCAAAGACGTCTACCATGAGGCGCTCTACTACGGGATCAAACCCCTC
GCCGACATCCTCCGCCGCCACAGGTCGATCCACGAGGAGGAGGAGGTCGC
CAGGTGGGCCGAGCAGTGCCCCGCCGCCCAGGAGAAGGCCGACGAGATCG
CCGACCTGGTCCTGAAGAAGTTTGCGGACACCCTGCGCAGGACGAGCCGC
GTGGTTCTCCAGTTCGACCAGGAGCCGAGCTGGGAGTCCGTGCACCTGAC
GGGAAGCACGGGCGAGACTATCGGCGGCTACTACAAGCCCTACGCCTTCC
AGCAAGACGAGGGTCACAAGGACCACAAGTGTCCCCAGCCAGAAATATCC
ATGGGAGAGATGTCGGAGAAGGAGAGGGAGAAGACGCTGAGTTTCTTGGA
TCATCACTTCGAGAAGCTTGGCTATAAGGTGGACGTCGTCGCCGGAGAGT
GTCGGGAAGCGGTGTGGTCCCAAAAAGAAGGCAGTGGAATGGACTCCATA
ACCATCTACTGTGCCAAGCAGATCTACACACTCACCTTAACTTGAATGCC
TGTACATAAAGCGGGCGCTTCGTCGTTTCACTTCATCGTCCCCCTGAACG
TTGGCGGCCATCACTACACCAGCACCCTGCCGGTACTGCGCAAGTACGAG
GAGTCCATGCTGGCGGCCATGTTCAGCGGCCGCCATATTGTTGTGAAGGA
CAAAGACGATCGCTACTTCATCGAACGAGACGGCAGCAACTTCGGCCACA
TCCTGAACTTCCTGCGCAACAGCAGCAGGCTGCCTCCTCCAGATAAGGTC
AAAGACGTCTACCATGAGGCGCTCTACTACGGGATCAAACCCCTCGCCGA
CATCCTCCGCCGCCACAGGTCGATCCACGAGGAGGAGGAGGTCGCCAGGT
GGGCCGAGCAGTGCCCCGCCGCCCAGGAGAAGGCCGACGAGATCGCCGAC
CTGGTCCTGAAGAAGTTTGCGGACACCCTGCGCAGGACGAGCCGCGTGGT
TCTCCAGTTCGACCAGGAGCCGAGCTGGGAGTCCGTGCACCTGACGGGAA
GCACGGGCGAGACTATCGGCGGCTACTACAAGCCCTACGCCTTCCAGCAA
GACGAGGGTCACAAGGACCACAAGTGTCCCCAGCCAGAAATATCCATGGG
AGAGATGTCGGAGAAGGAGAGGGAGAAGACGCTGAGTTTCTTGGATCATC
ACTTCGAGAAGCTTGGCTATAAGGTGGACGTCGTCGCCGGAGAGTGTCGG
GAAGCGGTGTGGTCCCAAAAAGAAGGCAGTGGAATGGACTCCATAACCAT
CTACTGTGCCAAGCAGATCTACACACTCACCTTAACTTGAATGCCTGTAC
ATAAAGCGGGCGCTTCGTCGTTTCACTTCATCGTCCCCCTGAACGTTGGC
GGCCATCACTACACCAGCACCCTGCCGGTACTGCGCAAGTACGAGGAGTC
CATGCTGGCGGCCATGTTCAGCGGCCGCCATATTGTTGTGAAGGACAAAG
ACGATCGCTACTTCATCGAACGAGACGGCAGCAACTTCGGCCACATCCTG
AACTTCCTGCGCAACAGCAGCAGGCTGCCTCCTCCAGATAAGGTCAAAGA
CGTCTACCATGAGGCGCTCTACTACGGGATCAAACCCCTCGCCGACATCC
TCCGCCGCCACAGGTCGATCCACGAGGAGGAGGAGGTCGCCAGGTGGGCC
GAGCAGTGCCCCGCCGCCCAGGAGAAGGCCGACGAGATCGCCGACCTGGT
CCTGAAGAAGTTTGCGGACACCCTGCGCAGGACGAGCCGCGTGGTTCTCC
AGTTCGACCAGGAGCCGAGCTGGGAGTCCGTGCACCTGACGGGAAGCACG
GGCGAGACTATCGGCGGCTACTACAAGCCCTACGCCTTCCAGCAAGACGA
GGGTCACAAGGACCACAAGTGTCCCCAGCCAGAAATATCCATGGGAGAGA
TGTCGGAGAAGGAGAGGGAGAAGACGCTGAGTTTCTTGGATCATCACTTC
GAGAAGCTTGGCTATAAGGTGGACGTCGTCGCCGGAGAGTGTCGGGAAGC
GGTGTGGTCCCAAAAAGAAGGCAGTGGAATGGACTCCATAACCATCTACT
GTGCCAAGCAGATCTACACACTCACCTTAACTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000244 | genome | Sc0000244:264091..271062 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL95961_evm2 |
| Biotype | protein_coding |
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