|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL95939_evm1 >transcript:BL95939_evm1-protein ID=transcript:BL95939_evm1-protein|Name=transcript:BL95939_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=173bp
MAILSVLLVFVLHITVGLVEAQQPCCTPLQWQATLGVTYGMGWIDSNTAQ
AVRNLTAEFAFDWNKRTAAMWMTGTQYSPLVPKPQPVHNAYIWDHATGVM
WTIDLTSQSCQHSELSKGPVSKLCVADDAVHVATAQLGPSQMVCDIFKFK
WPVGEGTPAAAAATVARNGTAKS Run BLAST on NCBI mRNA from alignment at Sc0000228:147573..152779+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL95939_evm1 ID=transcript:BL95939_evm1|Name=transcript:BL95939_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=5207bp|location=Sequence derived from alignment at Sc0000228:147573..152779+ (Branchiostoma lanceolatum)
ATGGCGATTCTATCGGTTCTACTTGTGTTCGTGCTTCACATCACGGTGGG
ACTTGTGGAGGCACAACAGCCATGCTGCACACCGCTACAGTGGCAGGCAA
CACTGGGGGTCACATATGGAATGGTACATAAAACCTTACGATCAATACGT
GAGTGGGCAGCACACTGGGAACAATATGTACTTTTCCTTCCATTAACTAT
TTTTTTTGCAAGCATGCTCCACCAATGGNCAACCCATTCACACTGCCTAC
ATCTGGGACCACGCGACGGTTAGTGAATATGGAGCCAAACCTGTACCAGT
GATTACCTTTGTAACAACCTCAGTTAAACCTGTACTAGTGACCATCTCTG
TAATAGGCACAGTCAAACCTGTACTAGTGACCACCTCTGTAATAGGCACA
GTCAAACCTGTACTAGTGACCACCTCTGCAATAGGCAGTGTCAACCCTGT
ACTAGTGGCGGTGACGTGGCCACTGGTACAGATTTGACTGTGCTTATTAC
AGAGGTGGTCTGACCGCCTCTGTAATAAACACAGTCAAATCTGTACTAGT
GGCCACCTCTGCAATAAGCACAGTCAAATCTGTTATAGGGGCCACCTAAC
GTTAGATATGGAAAGAAACAACTATCGGAAAGTCTTCGCAAGATATGCGT
TTTCTTTGCCAGCAAAATGACATTTAACTAGGGTCAACAATTTATCGGCT
TGTTCTCAGGGAGTAATGTGGACCGTCGACCTGACGAGACAAAGCTGCCA
GCACAGCGAGCTGAGTAAAGGTCCTGTGTCCAAGCTGTGCGTTGCGGGTA
CGTCACAACAAATCGTTATTGAACTAAGGCCATATTGCGCCAAAAGTAGT
TACTCCTTTTGGCGTATCTAAATACATGGATGTCTAACCTCCATCGACGT
ATTTCAATATTGCCTTAAAAGGCCATGTTGATTTGATTATATGGACGACA
TCCTCTGGGAACGCCAAAACTGATGCGAGCGTGCGAATGAAAAAAAGCTT
CGGCCCAAATAAAAAGTTGCCTTTATCATGAAAAACTACGTGGTCAGAAA
GGTTGAGCAAGTGACTAGAAACACAGAGCATGGTATAGCGCATAAAAGAT
TCTTCATTTACATTTCTTCACCACATCTTCTTCTTGGAATTAATTTTGTC
ATATGCATTCTACGACATTACTACCGTTTTCCTTTTTTTTTGCAATTGAC
GGCATATATTTGATAATTTCCAGCATTTTACAGTATTGTCGAAAACTTGC
TTTTTTGTGGAAACGGACAAAAATTTATGCACGCGCGGATGTCATCCATA
TACTGAAATAATCCAGTCAACATGGCCCAACAGTTGATTATCACAGAGAC
GAAAGAAAAGTTGATGGAGTAGATCGACAAATAATGTAGCCTGGTCCCAG
TCTGCACGGGTCGGCTTGGGTGTGTTTTACGGGCCAAGTCTGCTAAATTG
ACCCGTTTCTGTCAGTCTGTCTAAGCTGCCATATAGAGTTTAGCAGCCGT
CGTAGTTCTGCCGCCACTGTAGAGACCAGGAAGGACCTAACTACCCCTCG
GGCGGGCTAATCTGTCTGGGCTGGTGGGCATTACTCCCAGCCCCGCAGAG
AAACCGGGGAGCTTCCGACGGTATGGTTGCCAGGTTACAAATAGTGAGAA
AGTCTGGGACAAAAGTTTAAACGTTCTGATGTGCTCCTTCCAAGATGACG
CCGTCCATGTCGCTACCGCACATCTTGGTCCAAGTCAGATGGTCTGCGAC
ATTTTCAAGTTCAAGTGGCCGGTGGGTGAGGGTACTGCAGCTGCTGTGGC
TACTGTGGCGAGGAAAGGTATGGCATGTCGTGAATTCAGTTAACAGTTTT
CTGGAAATATCTTTATTGTGATGATCATGGAAACAAACGTTAACCATTGA
CCTTACACTGTTTTAAAAGACCTTGACCTTGTTGACACATTATAGTTACT
AATGTTAATGATAAGGATTTGCAGCGTTATTATGGCCGTAAGGAATGTGT
AAAATAACACTGTTATTGCAAAATTTCATACGAAATTCCAGATGATTCTG
TCACAGTGGAGTGTATTTCCAGGTTGTACACCGGTGAGGATGTCCATACT
GGACGGTAGCCCAACCAGCGGAGGTATCTTCTTTGACGCCCGGGTTTACA
ACATGAAGGAAGGGATACACAACACCAGTCTACTGTCTCCCCCTGAGTAC
TGCGCCCACAGCAACAATGTAATGTCATAATGCCACAATCACTTTAGACG
GTCATGGAAAATAATCTATGTGGTAGTGGGCAGGTGAAAGTTCTCTTGAG
TTCATACCACTGACTTTTATTTTTGAAGAATTGATCGTGAGATTGTGCTT
TGCTATCCTTGTTACGTTGAATGCCAGTCTTTGTGATTAGAAAATTGCAA
TTGTTTACATCTAGCCACACTACACAGGCGTATCACATCTGATCCATCTT
ATAAATCAAAGGTGTTCAACTTCTTATCAAATTATACCGTTTTATGACAG
CAGTGATGTGGTCGTCTACGAAAACGCTTATCATATATATTTCCTGTCTT
ACAGACTACAGCACACAAGCCACCTCCCTCCTTGGTGAAGCTTTTCTCAA
GTCTGTGAGAGACCATCGACGTCTAGCACGATCAGTCACGGTGAACAGGA
ATCTTGGTGTTCTAGGAATGACAATCAGGCAAAGACATAACACAGTGTTT
TAATAAAGATCAGACCGGAATCCTTTGTACCCATGTCATGTTTCCATTCT
TGTTCTTTTCTGGTCTTAATTGTTGTTTCTCAAATTAATGCTCGTTTCAT
GTGGATTCACGAGGACTTGAATGTTTTCAGATATGACATCACCTTGATAA
ATTGTTGTCAGTCTGTTTTTCTTGAGAATTCTCAATTTGAAAGCTAAGAC
GTCTTTGTAGGTAAGCGAGTGGTGCCTATCATTCTACAGACAGCCATAAT
GCTCACACTTTGTGATGAGTAACAGAATAATGTATCCATTCCATTTAGGT
AACGTCTACTAATATAATCCCGACACGTCAGATAAAAACTGTATATCCCC
TTCCTTGGAAAAGTATACCCTGAGTACCAGCCTCCGTAGTGACCGCTGGC
TCAAAACATTTGGTTAGCAAGCGAAATTTTTTGAGCCAGCGGTCACTACG
GAGGCTGGTACTCAGGCTAGGAAAAGTACGCCGAAAGAGATGCAATCGCC
CCATTATAACAATGCACTCCTGCATAAGAGACCGTGTTTACGTACCCACA
CTACCCGATGACTTATAACCTTTGTACGGTCAACGAACCAGCTCAATAGG
TTTAATCAGGATATTATATTTATTTTACCGTCGGTGGTTCCAAACGTCGG
TAATAGACCTAACCGCTGTGGTAGAGCAGATATGGCGATTCTATCGGTTC
TACTTGTGTTCGTGCTTCACATCACGGTGGGACTTGTGGAGGCACAACAG
CCATGCTGCACACCGCTACAGTGGCAGGCAACACTGGGGGTCACATATGG
AATGGTACATAAAACCTTACGATCAATACGTGAGTGGGCAGCACACTGGG
AACAATATGTACTTTTCCTTCCATTAACTATTTTTTTTGCAAGCATGCTC
CACCAATGGTTTACATTCCGGATGTATAACCCTAGAGCTAACCTAACTGA
TAATAGGGTATATAGTTTGCTATAACGAAACGGCTTTGGGATGCAGCTCG
ATATGTTTCCTTATTTTTCATTCTCTTGTTAGACGCTTNCATGTAACTGA
TAATAGGGTATATAGTTTGCTATAACGAAACGGCTTTGGGATGCAGCTCG
ATATGTTTCCTTATTTTTCATTCTCTTGTTAGACGCTTTGTGCACGGCTT
TGATTTGATTAGTAGAAGTTAGAACACATTGAGTTAATCAAGACCCTTCT
GAAATTCCCGGTACTAATAATATCTGTCTAGTAAACAATACGCCTCTTTT
TAGATCTTTAACGTTTTGTTTCCGTACTTTTGGACCTTGGGTTGTCCTCA
AAGAGCAAACAAAACACTGGCTATAGTCACTGACGTTTTCCATGGCTGAT
GTGTGCCCAGGGCTGGATTGACAGTAATACTGCCCAAGCTGTTAGGAACC
TAACTGCAGAGTTTGCCTTCGACTGGAATAAACGCACGGCAGCGATGTGG
ATGACGGGAACTCAGTACAGCCCTCTCGTTCCCAAACCACAACCAGTCCA
CAATGCCTACATCTGGGACCACGCAACGGTCAGTGCATATGTTGATAAGT
ACAATCAAACCTGTACTAGGGACCACCTCTGTGGTAAAGCTCAGTCAAAC
CTGCACTAGGGACCGCCTCTGTAATGCAGTCAAATCTGTACTAGTGACCA
TCTCTGCACAAGGACACTGTGGCTAGTTTTGCTGATTACTTTTTTCTCAT
TAATCTAAGTACCAAGAGCCCCATTTATAATGGCTACTGCGATCATTTTC
TCCAAGTACCATGGATGGTCGCTTTTTTGAGACAGGTTTGACTGTATGAT
GTAAGAGTTTAATAGGTACATGAAGAAAATACTACCGGAAAAACAGTCTT
CGTGAGGTGCGTTTCCTTTGCCAGCAGGGGAAAAATGACATTCACATTTA
ACTTGGGTCAACATTTTATCGGCTTGTTCCCAGGGAGTAATGTGGACCAT
CGACCTGACCAGTCAAAGCTGCCAGCACAGCGAGCTGAGTAAAGGTCCTG
TGTCCAAGCTGTGCGTTGCAGGTATGTCACAACAAATCGTCATCATGCTA
ACAGATTATTATCACAGATACGAAAGAAAAGTTGATGGAGCAAACCTGCT
CTACAAATAGAGGTTGTTGGGAAAAATTGTGACCTTTTTGTGATATGCCC
CGTTTTTGCTCACCCTCGTCGTTGGGCGGAAAAAGGGGCATATACATGTA
GTAAGGTCACCATTTCCCCCATCCTCTGCTTGGAGAGTAGAATAGATTTT
CAAAAAGTGAGAAAGACTGGGACAAAAGTGTAAACGTTCTAATGTACTCC
TTCCACAGATGACGCCGTCCATGTCGNACAAAAGTTTAAACGTTCTAATG
TACTCCTTCCACAGATGACGCCGTCCATGTCGCCACCGCACAACTGGGTC
CAAGTCAGATGGTCTGCGATATTTTCAAGTTCAAGTGGCCGGTAGGGGAG
GGTACCCCTGCAGCTGCCGCGGCTACTGTGGCGAGGAATGGTACGGCTAA
GTCGTAA Coding sequence (CDS) from alignment at Sc0000228:147573..152779+ >transcript:BL95939_evm1 ID=transcript:BL95939_evm1|Name=transcript:BL95939_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=2088bp|location=Sequence derived from alignment at Sc0000228:147573..152779+ (Branchiostoma lanceolatum)
ATGGCGATTCTATCGGTTCTACTTGTGTTCGTGCTTCACATCACGGTGGG
ACTTGTGGAGGCACAACAGCCATGCTGCACACCGCTACAGTGGCAGGCAA
CACTGGGGGTCACATATGGAATGGGCTGGATTGACAGTAATACTGCCCAA
GCTGTTAGGAACCTAACTGCAGAGTTTGCCTTCGACTGGAATAAACGCAC
GGCAGCGATGTGGATGACGGGAACTCAGTACAGCCCTCTCGTTCCCAAAC
CACAACCAGTCCACAATGCCTACATCTGGGACCACGCAACGGGAGTAATG
TGGACCATCGACCTGACCAGTCAAAGCTGCCAGCACAGCGAGCTGAGTAA
AGGTCCTGTGTCCAAGCTGTGCGTTGCAGATGACGCCGTCCATGTCGCCA
CCGCACAACTGGGTCCAAGTCAGATGGTCTGCGATATTTTCAAGTTCAAG
TGGCCGGTAGGGGAGGGTACCCCTGCAGCTGCCGCGGCTACTGTGGCGAG
GAATGGTACGGCTAAGTCGTAAATGGCGATTCTATCGGTTCTACTTGTGT
TCGTGCTTCACATCACGGTGGGACTTGTGGAGGCACAACAGCCATGCTGC
ACACCGCTACAGTGGCAGGCAACACTGGGGGTCACATATGGAATGGGCTG
GATTGACAGTAATACTGCCCAAGCTGTTAGGAACCTAACTGCAGAGTTTG
CCTTCGACTGGAATAAACGCACGGCAGCGATGTGGATGACGGGAACTCAG
TACAGCCCTCTCGTTCCCAAACCACAACCAGTCCACAATGCCTACATCTG
GGACCACGCAACGGGAGTAATGTGGACCATCGACCTGACCAGTCAAAGCT
GCCAGCACAGCGAGCTGAGTAAAGGTCCTGTGTCCAAGCTGTGCGTTGCA
GATGACGCCGTCCATGTCGCCACCGCACAACTGGGTCCAAGTCAGATGGT
CTGCGATATTTTCAAGTTCAAGTGGCCGGTAGGGGAGGGTACCCCTGCAG
CTGCCGCGGCTACTGTGGCGAGGAATGGTACGGCTAAGTCGTAAATGGCG
ATTCTATCGGTTCTACTTGTGTTCGTGCTTCACATCACGGTGGGACTTGT
GGAGGCACAACAGCCATGCTGCACACCGCTACAGTGGCAGGCAACACTGG
GGGTCACATATGGAATGGGCTGGATTGACAGTAATACTGCCCAAGCTGTT
AGGAACCTAACTGCAGAGTTTGCCTTCGACTGGAATAAACGCACGGCAGC
GATGTGGATGACGGGAACTCAGTACAGCCCTCTCGTTCCCAAACCACAAC
CAGTCCACAATGCCTACATCTGGGACCACGCAACGGGAGTAATGTGGACC
ATCGACCTGACCAGTCAAAGCTGCCAGCACAGCGAGCTGAGTAAAGGTCC
TGTGTCCAAGCTGTGCGTTGCAGATGACGCCGTCCATGTCGCCACCGCAC
AACTGGGTCCAAGTCAGATGGTCTGCGATATTTTCAAGTTCAAGTGGCCG
GTAGGGGAGGGTACCCCTGCAGCTGCCGCGGCTACTGTGGCGAGGAATGG
TACGGCTAAGTCGTAAATGGCGATTCTATCGGTTCTACTTGTGTTCGTGC
TTCACATCACGGTGGGACTTGTGGAGGCACAACAGCCATGCTGCACACCG
CTACAGTGGCAGGCAACACTGGGGGTCACATATGGAATGGGCTGGATTGA
CAGTAATACTGCCCAAGCTGTTAGGAACCTAACTGCAGAGTTTGCCTTCG
ACTGGAATAAACGCACGGCAGCGATGTGGATGACGGGAACTCAGTACAGC
CCTCTCGTTCCCAAACCACAACCAGTCCACAATGCCTACATCTGGGACCA
CGCAACGGGAGTAATGTGGACCATCGACCTGACCAGTCAAAGCTGCCAGC
ACAGCGAGCTGAGTAAAGGTCCTGTGTCCAAGCTGTGCGTTGCAGATGAC
GCCGTCCATGTCGCCACCGCACAACTGGGTCCAAGTCAGATGGTCTGCGA
TATTTTCAAGTTCAAGTGGCCGGTAGGGGAGGGTACCCCTGCAGCTGCCG
CGGCTACTGTGGCGAGGAATGGTACGGCTAAGTCGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000228 | genome | Sc0000228:147573..152779 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL95939_evm1 |
| Biotype | protein_coding |
|
