transcript:BL95926_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95926_evm0
Unique Nametranscript:BL95926_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95926_evm0

>transcript:BL95926_evm0-protein ID=transcript:BL95926_evm0-protein|Name=transcript:BL95926_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=181bp
MVIQDFVLIPCHTAPDDAVLETDLLFDVYQDAVARWGVDDVMVLGDLNTD
CRYVTSGEWDQIRLWTDPRFTWLIGSDADTTVSSTDCAYDRFVVAGDDFM
SGINASSVSVFNYKDVFNITQDLISMNDVDAKPGSANNAPTDDRENDIDA
KPGSANNAPNDGRGNDIDAKPGSANNAPIDY
Run BLAST on NCBI

mRNA from alignment at Sc0000218:175597..178485+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95926_evm0 ID=transcript:BL95926_evm0|Name=transcript:BL95926_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=2889bp|location=Sequence derived from alignment at Sc0000218:175597..178485+ (Branchiostoma lanceolatum)
ATGGGTATATTGTTCTTTGTGCGTATAATTTATAAAAACTTGAGTGTAGT
GTCACGTCGTCCTTGTCGGTGAAAAACCGAAGTACAGACAAAAAAAGAAA
AGTTTCTTTACTTAGCAAAATGCGCCAGGAATAGGGGTGGGTACCGGTAC
CGTGTACCGGTACAAAACCGGAATTTCTTAATGGACCGGTCCAAAAAAAC
CGGTCCGTAAAAAATCAGTGGACCGGCCTATGGACCGATTAGAAAATTCA
TAGTACCAGGCGGCCACATAACTGGTCTAAGAAAATACAAAACAGCAGAT
TTAACTTCGTTTTCGAAGACGTTAGCTGTGAATCATACCTAGAAACACTT
AAAGGATTAGTAAACAGACGGCGAGAAGAGTATAATTATAATTTTGAGAC
AAAGTGCAAACCTAAGAAATTATATCGTTCCAGACATGACGTTTGGAGAC
TTTTGCGTGTGTCTCGCTCTCCAAAATATGATGTACTGCGACACTACTAT
AATCAGGTACAGGTACAGGTCCGGACCTGGACCTGACCCTCTGGACCTGG
ACCTGGACCGGACCTGAATTGTTTGTACCGGTACCCACCCCTAACCAGGA
ATGCTCCCCCCCTCTCCCAAAAAAAGTGCCAGACACTGCGCGGGCAGGGC
ACTGTTTTGTGACGATCTCGCATAGTAAGCCCTGGCCATTGTTCTGCCTT
TGACTGTAGAATCACAACTAATTTGGTATCAATCTAAAGGATAAGACAAA
GCTTTCCAGTAATACATAGTACTATTCAATTGATAAAGTAACGACGGCGA
AAATATGATTGACCAAATGGAAGTGTTCCTAAGTGTTTGTACTGAGCGTA
TATAGGAACGAACCGTAGCTAGAATAAAAAAAGAGTTCGGAGACCTCTTA
TCTCCATGAAATATTTTGATTATGCAAATGACTTCTACATTTGCATAATC
TATGCTTGGCCATGTGCACCTTTAACTGACTTACACAGGTCACAATATTA
ACAGTTGACATTTACCACTTAGAATAATCATAGCACTTTTGCATTAATCA
TGCAAATAAGGTATTTCTTTATGCAGTTTAATTTATGCAAGTTTCATCTC
TCTTCTTTTTTTTCACATCCGAAATCGGTTTTTGACAGACGTGGACGACG
TGGCACTGCACTCAAGTTTTTATAACTTATATTAACAGTGCCTCGTACAG
ATAACAACATACCCATTTTAATTTTCATACACCTGGGCGAAGTGAGGAAA
GTCGTGTAAAGTGCCTTTCCCAAGGGCACAACATCGGTGGCGTCAGGGAG
ATTCGAACTCGGAACCTCTTGGTTCTGAGTCGAACACCCTGTCGTTACGC
CACACGATCTCTCTTTCTCTTTCACGCTCCATCCTTCCTCCCAGTTATTC
AGGACTTCGTCCTCATCCCGTGCCATACGGCCCCAGACGACGCAGTCCTG
GAAACCGACCTCCTCTTTGACGTCTACCAGGACGCTGTTGCTAGGTGGGG
CGTTGATGACGTCATGGTACTTGGCGACCTGAACACCGACTGTCGCTACG
TCACTTCCGGCGAGTGGGACCAGATCCGCCTGTGGACGGACCCGAGGTTC
ACCTGGCTGATCGGAAGTGACGCAGACACGACCGTTAGCTCAACGGACTG
CGCTTACGATAGGTTAGTGGAGAACGCGTTTTGCTTTTCCTTCTTGTGTA
CCATATTCTTGCTAATAGATGTTTTGACAACTTACTGACCAGTCTAACTG
GTCCGGCACTTTTAGCCTTGTGGTAAGTGAGTTGGGTCCGTGAGCTGGCG
GCCCGGGTTCGATTCCCGGGAGCCAGGAGACTGTACTACACGTATTTGGC
TCTCAATGTTATTTCATTGCTTTCATTGCTCAGTAGAATTTTTATATTCA
TGCTGCATTTCTATTTTGTAGTTTGTACGCAAATTGCTCGTTTCGTTGCA
TCAGTGAACTAAAGCATTTTCTCATTTTCTATTATCACATCATAGCTGAA
TAAGTTGTTAAACATTGAAATACGCTTGTTTGTCTTATTCTCAGGTTTGT
TGTTGCTGGAGACGATTTCATGAGTGGAATCAACGCGAGCTCTGTTTCTG
TATTCAACTACAAGGACGTCTTTAACATCACACAAGATCTGGTAAGACCA
CTAAATCTGTCGATACTAGTATATATATATATATATGTATATTCAATCTC
CAAGCAAATGTAGAACGGCAAAATCGTAACGTTTCTCTTCTTGTTTCTAG
AAAAGCTCCTTGTTCCTTGAAACGGGGAGCTTAAGAAATGTTGATTTTGC
CTAGCTTTTTGCACCTGCTTGAAGATTAGTATGTAAGTCCTCTTTAAACA
AATGGCACGCGATGGTATGGAAAGCCCCTTGGATAACTGTATCATGTTAG
TGCGTAGCATACTTGTCTAACACCACTTCAGAACCATTAAACCAGTTTTA
TAACGGTTAATGACACACGGTCTGGAAAGTAATTTTCCGTGACCAATGTT
TATAGAAAGCCTCCGCCCTGAGACATCGCCAAAAATTAGTCACGATTCTA
TCCTTCTTGCTAAAATCGGCATTTATTCGGTTGCTTTTCTCTGTATAATG
AATAAACATGTTTGAGGCCTTTTTATCTACTTACGTTTATGTAGGCATAT
GACGTCAGTGACCACTGGCCGATAGAACTGGATCTGTACGAGATAGGAGT
GCCCCTACCGACGGCCGCAGGAACGACGTCGACGCAAAGCCCGGATCTGC
CAACAACGCCCCTACCGACGACCGAGAGAACGACATCGACGCAAAGCCCG
GATCTGCCAACAACGCCCCTAACGACGGCCGAGGGAACGACATCGACGCA
AAGCCCGGATCTGCCAACAACGCCCCTATCGACTACTGA

Coding sequence (CDS) from alignment at Sc0000218:175597..178485+

>transcript:BL95926_evm0 ID=transcript:BL95926_evm0|Name=transcript:BL95926_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=2730bp|location=Sequence derived from alignment at Sc0000218:175597..178485+ (Branchiostoma lanceolatum)
ATGGTTATTCAGGACTTCGTCCTCATCCCGTGCCATACGGCCCCAGACGA
CGCAGTCCTGGAAACCGACCTCCTCTTTGACGTCTACCAGGACGCTGTTG
CTAGGTGGGGCGTTGATGACGTCATGGTACTTGGCGACCTGAACACCGAC
TGTCGCTACGTCACTTCCGGCGAGTGGGACCAGATCCGCCTGTGGACGGA
CCCGAGGTTCACCTGGCTGATCGGAAGTGACGCAGACACGACCGTTAGCT
CAACGGACTGCGCTTACGATAGGTTTGTTGTTGCTGGAGACGATTTCATG
AGTGGAATCAACGCGAGCTCTGTTTCTGTATTCAACTACAAGGACGTCTT
TAACATCACACAAGATCTGATTAGTATGAACGACGTCGACGCAAAGCCCG
GATCTGCCAACAACGCCCCTACCGACGACCGAGAGAACGACATCGACGCA
AAGCCCGGATCTGCCAACAACGCCCCTAACGACGGCCGAGGGAACGACAT
CGACGCAAAGCCCGGATCTGCCAACAACGCCCCTATCGACTACTGAATGG
TTATTCAGGACTTCGTCCTCATCCCGTGCCATACGGCCCCAGACGACGCA
GTCCTGGAAACCGACCTCCTCTTTGACGTCTACCAGGACGCTGTTGCTAG
GTGGGGCGTTGATGACGTCATGGTACTTGGCGACCTGAACACCGACTGTC
GCTACGTCACTTCCGGCGAGTGGGACCAGATCCGCCTGTGGACGGACCCG
AGGTTCACCTGGCTGATCGGAAGTGACGCAGACACGACCGTTAGCTCAAC
GGACTGCGCTTACGATAGGTTTGTTGTTGCTGGAGACGATTTCATGAGTG
GAATCAACGCGAGCTCTGTTTCTGTATTCAACTACAAGGACGTCTTTAAC
ATCACACAAGATCTGATTAGTATGAACGACGTCGACGCAAAGCCCGGATC
TGCCAACAACGCCCCTACCGACGACCGAGAGAACGACATCGACGCAAAGC
CCGGATCTGCCAACAACGCCCCTAACGACGGCCGAGGGAACGACATCGAC
GCAAAGCCCGGATCTGCCAACAACGCCCCTATCGACTACTGAATGGTTAT
TCAGGACTTCGTCCTCATCCCGTGCCATACGGCCCCAGACGACGCAGTCC
TGGAAACCGACCTCCTCTTTGACGTCTACCAGGACGCTGTTGCTAGGTGG
GGCGTTGATGACGTCATGGTACTTGGCGACCTGAACACCGACTGTCGCTA
CGTCACTTCCGGCGAGTGGGACCAGATCCGCCTGTGGACGGACCCGAGGT
TCACCTGGCTGATCGGAAGTGACGCAGACACGACCGTTAGCTCAACGGAC
TGCGCTTACGATAGGTTTGTTGTTGCTGGAGACGATTTCATGAGTGGAAT
CAACGCGAGCTCTGTTTCTGTATTCAACTACAAGGACGTCTTTAACATCA
CACAAGATCTGATTAGTATGAACGACGTCGACGCAAAGCCCGGATCTGCC
AACAACGCCCCTACCGACGACCGAGAGAACGACATCGACGCAAAGCCCGG
ATCTGCCAACAACGCCCCTAACGACGGCCGAGGGAACGACATCGACGCAA
AGCCCGGATCTGCCAACAACGCCCCTATCGACTACTGAATGGTTATTCAG
GACTTCGTCCTCATCCCGTGCCATACGGCCCCAGACGACGCAGTCCTGGA
AACCGACCTCCTCTTTGACGTCTACCAGGACGCTGTTGCTAGGTGGGGCG
TTGATGACGTCATGGTACTTGGCGACCTGAACACCGACTGTCGCTACGTC
ACTTCCGGCGAGTGGGACCAGATCCGCCTGTGGACGGACCCGAGGTTCAC
CTGGCTGATCGGAAGTGACGCAGACACGACCGTTAGCTCAACGGACTGCG
CTTACGATAGGTTTGTTGTTGCTGGAGACGATTTCATGAGTGGAATCAAC
GCGAGCTCTGTTTCTGTATTCAACTACAAGGACGTCTTTAACATCACACA
AGATCTGATTAGTATGAACGACGTCGACGCAAAGCCCGGATCTGCCAACA
ACGCCCCTACCGACGACCGAGAGAACGACATCGACGCAAAGCCCGGATCT
GCCAACAACGCCCCTAACGACGGCCGAGGGAACGACATCGACGCAAAGCC
CGGATCTGCCAACAACGCCCCTATCGACTACTGAATGGTTATTCAGGACT
TCGTCCTCATCCCGTGCCATACGGCCCCAGACGACGCAGTCCTGGAAACC
GACCTCCTCTTTGACGTCTACCAGGACGCTGTTGCTAGGTGGGGCGTTGA
TGACGTCATGGTACTTGGCGACCTGAACACCGACTGTCGCTACGTCACTT
CCGGCGAGTGGGACCAGATCCGCCTGTGGACGGACCCGAGGTTCACCTGG
CTGATCGGAAGTGACGCAGACACGACCGTTAGCTCAACGGACTGCGCTTA
CGATAGGTTTGTTGTTGCTGGAGACGATTTCATGAGTGGAATCAACGCGA
GCTCTGTTTCTGTATTCAACTACAAGGACGTCTTTAACATCACACAAGAT
CTGATTAGTATGAACGACGTCGACGCAAAGCCCGGATCTGCCAACAACGC
CCCTACCGACGACCGAGAGAACGACATCGACGCAAAGCCCGGATCTGCCA
ACAACGCCCCTAACGACGGCCGAGGGAACGACATCGACGCAAAGCCCGGA
TCTGCCAACAACGCCCCTATCGACTACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95926gene:BL95926Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95926_evm0transcript:BL95926_evm0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95926_evm0-E1BL95926_evm0-E1-1564476830-393928Branchiostoma lanceolatumexon
BL95926_evm0-E2BL95926_evm0-E2-1564476830-393930Branchiostoma lanceolatumexon
BL95926_evm0-E3BL95926_evm0-E3-1564476830-393932Branchiostoma lanceolatumexon
BL95926_evm0-E4BL95926_evm0-E4-1564476830-393934Branchiostoma lanceolatumexon
BL95926_evm0-E5BL95926_evm0-E5-1564476830-393936Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000218genomeSc0000218:175597..178485 +
Properties
Property NameValue
Transcript idBL95926_evm0
Biotypeprotein_coding