transcript:BL95823_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95823_evm0
Unique Nametranscript:BL95823_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95823_evm0

>transcript:BL95823_evm0-protein ID=transcript:BL95823_evm0-protein|Name=transcript:BL95823_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=78bp
MASKGRQVVEEVIQKTDVNASKGKRQQVTEDTIVPEQSKVVPARKADYVP
GVAPPPEVIKKTLGRGEVVEDEIVPVTK
Run BLAST on NCBI

mRNA from alignment at Sc0000141:574469..575717-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95823_evm0 ID=transcript:BL95823_evm0|Name=transcript:BL95823_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=1249bp|location=Sequence derived from alignment at Sc0000141:574469..575717- (Branchiostoma lanceolatum)
ATGGCGAGCAAAGGTATGTACATGTCTCAGGACGTTTCTCTATTTACGAC GCCGGGTCACATTGTCTTAGGCCGTCGCACGCTTTTGATGCCGTAGAGTT TTCAAGCAGGCTGCGACAGAACCATCAGCCGACAAGGACCTAAAATTGCC TTTTCATTTACAAAAATACAGCTGAATTTTGCACGACACATTCACGACAA TCCCAAGCATGTCCTCAGTTTGCGACCGTACGGCAGTCGTACGGCGAATG TGACCCGTAGTGACCTACATCCAGGTAGTAATGTTTACTGTAATGAATAT TTCCGTGCTACTGCATACGTCACAAAACCTTCTGTCTGTTCAGGACGACA AGTAGTTGAAGAAGTCATCCAGAAAACGGATGTAAACGCCTCCAAAGGTA CGTAGTGCCCTGCATTGTAGATGTTTGCATCAAATGTCCGAATGTACGGA TGGTTGTAAATTGATTTTTTTTTATCATATTTTTTTTTTTTTTGTGTCAC GCAACGAACGTATTGAGACGTTTGAACAAGGAGTTGAACTTTCTGTGACG TGTTATCAGCGTTCATTAAGTTACATCCTGGTAAAGGACTACGATGTGTT TGTCGCTGGTAGAGGCTATTTCATTAGGGGATGTCGTTCTTTCTATTGAA GAAAGGCTACACAAAGATTTGATGTGTTATTTCTAAATTAGGAAAGCGCC AGCAGGTTACCGAAGACACCATAGTCCCCGAACAGAGCAAAGTTGTCCCT GCACGGAAAGCCGACTACGTCCCAGGCGTCGCCCCTCCTCCTGAAGTCAT AAAGAAGACACTAGGTAAGAACGTTTCACATAGTTACTAAGTAAGCTTAC TTTCAAATGGACTGACCATAGTTTGCATCTATATATCGAGGTTACTGGAC ACAATGCCATAGACACACCATACATGGTGAATGATTTTATTAGATGCCAC AATACGTATATTGTAGAAGTGAGCCAGGGTCTAGCTGAAAACTGTAAAAG TATGTACAAATGTGTATATATACGAACAAAGGGATACAGTATACTGTAAA GGTGGTATGTGAAACTATATAGTGCACTCTTATTGTAGCACGTCACACTA AATGGTGAATGGTTTATATGGTGAAGAAAAACATATTTCTATGAAATGAT GACTACTTTATGCTTGCTTTAATCTTACGCAAATTGTGAATTTTGCCATC AGGACGTGGGGAGGTCGTTGAAGATGAGATTGTACCTGTCACTAAATAG

Coding sequence (CDS) from alignment at Sc0000141:574469..575717-

>transcript:BL95823_evm0 ID=transcript:BL95823_evm0|Name=transcript:BL95823_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=948bp|location=Sequence derived from alignment at Sc0000141:574469..575717- (Branchiostoma lanceolatum)
ATGGCGAGCAAAGGACGACAAGTAGTTGAAGAAGTCATCCAGAAAACGGA
TGTAAACGCCTCCAAAGGAAAGCGCCAGCAGGTTACCGAAGACACCATAG
TCCCCGAACAGAGCAAAGTTGTCCCTGCACGGAAAGCCGACTACGTCCCA
GGCGTCGCCCCTCCTCCTGAAGTCATAAAGAAGACACTAGGACGTGGGGA
GGTCGTTGAAGATGAGATTGTACCTGTCACTAAATAGATGGCGAGCAAAG
GACGACAAGTAGTTGAAGAAGTCATCCAGAAAACGGATGTAAACGCCTCC
AAAGGAAAGCGCCAGCAGGTTACCGAAGACACCATAGTCCCCGAACAGAG
CAAAGTTGTCCCTGCACGGAAAGCCGACTACGTCCCAGGCGTCGCCCCTC
CTCCTGAAGTCATAAAGAAGACACTAGGACGTGGGGAGGTCGTTGAAGAT
GAGATTGTACCTGTCACTAAATAGATGGCGAGCAAAGGACGACAAGTAGT
TGAAGAAGTCATCCAGAAAACGGATGTAAACGCCTCCAAAGGAAAGCGCC
AGCAGGTTACCGAAGACACCATAGTCCCCGAACAGAGCAAAGTTGTCCCT
GCACGGAAAGCCGACTACGTCCCAGGCGTCGCCCCTCCTCCTGAAGTCAT
AAAGAAGACACTAGGACGTGGGGAGGTCGTTGAAGATGAGATTGTACCTG
TCACTAAATAGATGGCGAGCAAAGGACGACAAGTAGTTGAAGAAGTCATC
CAGAAAACGGATGTAAACGCCTCCAAAGGAAAGCGCCAGCAGGTTACCGA
AGACACCATAGTCCCCGAACAGAGCAAAGTTGTCCCTGCACGGAAAGCCG
ACTACGTCCCAGGCGTCGCCCCTCCTCCTGAAGTCATAAAGAAGACACTA
GGACGTGGGGAGGTCGTTGAAGATGAGATTGTACCTGTCACTAAATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95823gene:BL95823Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95823_evm0-E1BL95823_evm0-E1-1564476830-341864Branchiostoma lanceolatumexon
BL95823_evm0-E2BL95823_evm0-E2-1564476830-341862Branchiostoma lanceolatumexon
BL95823_evm0-E3BL95823_evm0-E3-1564476830-341860Branchiostoma lanceolatumexon
BL95823_evm0-E4BL95823_evm0-E4-1564476830-341858Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95823_evm0transcript:BL95823_evm0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000141genomeSc0000141:574469..575717 -
Properties
Property NameValue
Transcript idBL95823_evm0
Biotypeprotein_coding