transcript:BL95746_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95746_evm0
Unique Nametranscript:BL95746_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95746_evm0

>transcript:BL95746_evm0-protein ID=transcript:BL95746_evm0-protein|Name=transcript:BL95746_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=128bp
MGIASGTLDPRNFGNYTVQDAAYCSANTDNLKFLMDKTGNESLKAFFESQ
YEEFRNETESLYNQWSLKPGGSDLGQAAKWYVDVEYKVAHEEDPLYYLVA
MIPCYRLWPYLANKMQAEGDDKVRLHQN
Run BLAST on NCBI

mRNA from alignment at Sc0000108:271180..272295+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95746_evm0 ID=transcript:BL95746_evm0|Name=transcript:BL95746_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=1116bp|location=Sequence derived from alignment at Sc0000108:271180..272295+ (Branchiostoma lanceolatum)
ATGGTAAGTGTAGGAGGGCTTATGTTACAGTATGACCTAGTTCTTGCTGG CCCCGACAGAAAATAACCAAAAATTGCATCAAAAAATTGCAAAATAAATC ATTTTGAAGTAGTGTATGCCAAAAAAAATAATGGGGTCCTTTGGGTAAAT ATCCAATGCACAACTGAACCAAATTTCAGGTCCTCAGGTTTCAACACCAC GGCACTGGAGGCCATCATGTGCGACTTTTGTCTGAAAATGACCAAAAAAC CTCCATAAAATCATTTTAAAAACTTATATCCAAAAAATTTAAAAAGGGTC TAGGGGGTATACACGTACTCTACCTGCATACCAAATTTCAGCTAATTTGA TCGACGGACGACCGAGAAGAAGCGATTTGAAGATTTGACAGGAGAAGAAG GAGAAGGAGAAGAAGAAGAAGGAGAAGAAGAAACCTTACAAAAACAATAT GTTTCGTTGGCGAAACAGAAACATAAAAAGTAAACTTTCATTCTACACAT CACATTTCAGGGCATCGCATCTGGAACCCTCGATCCAAGGAACTTTGGAA ACTACACAGTTCAGGACGCCGCATACTGCAGCGCTAATACTGACAATCTG AAGTTCCTCATGGACAAGACTGGCAACGAGTCGTTGAAGGCGTTTTTTGA AAGCCAGTACGAAGAGTTCAGGAATGAAACCGAATCGCTGTACAATCAAT GGTCTCTCAAGGTAAAGCGCGTCACCTGTTGGCAGCTACCAAGCTCGAAG AGTTGTGAAATAGATTCAAATGAAATGCACATTCTATTGAAAATTCAGTG GAAGTTTTTCTGAATGAACTAGACCATTCGTCACAGTGTATTTGCAAAGT AACAATACGCATTCATTGTTGAAATCATAATTTGCGAAATAATGATAATA TTTTGGACCAATTCCTATTCATTCTTCTTGTAGCCGGGTGGTTCAGACCT CGGTCAGGCTGCCAAATGGTACGTAGATGTGGAGTACAAGGTAGCGCACG AGGAGGACCCTCTGTACTACCTGGTGGCCATGATTCCGTGTTATCGACTG TGGCCTTACCTGGCCAACAAGATGCAAGCTGAGGGTGACGACAAGGTCAG GTTGCATCAGAACTAG

Coding sequence (CDS) from alignment at Sc0000108:271180..272295+

>transcript:BL95746_evm0 ID=transcript:BL95746_evm0|Name=transcript:BL95746_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=1161bp|location=Sequence derived from alignment at Sc0000108:271180..272295+ (Branchiostoma lanceolatum)
ATGGGCATCGCATCTGGAACCCTCGATCCAAGGAACTTTGGAAACTACAC
AGTTCAGGACGCCGCATACTGCAGCGCTAATACTGACAATCTGAAGTTCC
TCATGGACAAGACTGGCAACGAGTCGTTGAAGGCGTTTTTTGAAAGCCAG
TACGAAGAGTTCAGGAATGAAACCGAATCGCTGTACAATCAATGGTCTCT
CAAGCCGGGTGGTTCAGACCTCGGTCAGGCTGCCAAATGGTACGTAGATG
TGGAGTACAAGGTAGCGCACGAGGAGGACCCTCTGTACTACCTGGTGGCC
ATGATTCCGTGTTATCGACTGTGGCCTTACCTGGCCAACAAGATGCAAGC
TGAGGGTGACGACAAGGTCAGGTTGCATCAGAACTAGATGGGCATCGCAT
CTGGAACCCTCGATCCAAGGAACTTTGGAAACTACACAGTTCAGGACGCC
GCATACTGCAGCGCTAATACTGACAATCTGAAGTTCCTCATGGACAAGAC
TGGCAACGAGTCGTTGAAGGCGTTTTTTGAAAGCCAGTACGAAGAGTTCA
GGAATGAAACCGAATCGCTGTACAATCAATGGTCTCTCAAGCCGGGTGGT
TCAGACCTCGGTCAGGCTGCCAAATGGTACGTAGATGTGGAGTACAAGGT
AGCGCACGAGGAGGACCCTCTGTACTACCTGGTGGCCATGATTCCGTGTT
ATCGACTGTGGCCTTACCTGGCCAACAAGATGCAAGCTGAGGGTGACGAC
AAGGTCAGGTTGCATCAGAACTAGATGGGCATCGCATCTGGAACCCTCGA
TCCAAGGAACTTTGGAAACTACACAGTTCAGGACGCCGCATACTGCAGCG
CTAATACTGACAATCTGAAGTTCCTCATGGACAAGACTGGCAACGAGTCG
TTGAAGGCGTTTTTTGAAAGCCAGTACGAAGAGTTCAGGAATGAAACCGA
ATCGCTGTACAATCAATGGTCTCTCAAGCCGGGTGGTTCAGACCTCGGTC
AGGCTGCCAAATGGTACGTAGATGTGGAGTACAAGGTAGCGCACGAGGAG
GACCCTCTGTACTACCTGGTGGCCATGATTCCGTGTTATCGACTGTGGCC
TTACCTGGCCAACAAGATGCAAGCTGAGGGTGACGACAAGGTCAGGTTGC
ATCAGAACTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95746gene:BL95746Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95746_evm0-E1BL95746_evm0-E1-1564476830-309944Branchiostoma lanceolatumexon
BL95746_evm0-E2BL95746_evm0-E2-1564476830-309946Branchiostoma lanceolatumexon
BL95746_evm0-E3BL95746_evm0-E3-1564476830-309948Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95746_evm0transcript:BL95746_evm0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000108genomeSc0000108:271180..272295 +
Properties
Property NameValue
Transcript idBL95746_evm0
Biotypeprotein_coding