transcript:BL95727_evm1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95727_evm1
Unique Nametranscript:BL95727_evm1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95727_evm1

>transcript:BL95727_evm1-protein ID=transcript:BL95727_evm1-protein|Name=transcript:BL95727_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=180bp
MFSLKLSLDYDVIINCTGVGAHDLMGDTKVFPSRGQVMRVKAPWVKHWML
LEGKHPYIPGIPYVAGGSTATLIGGIRQDGRWDVHNDPRDTKTIWNGVTA
AFPALKDAVVLEEKTGLRPMREEIRLEREEKKDPLSGRTVQVIHNYGHGA
NGITWSLGCAKEVALMVKQLLPEKSIKSRL
Run BLAST on NCBI

mRNA from alignment at Sc0000102:92100..94866-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95727_evm1 ID=transcript:BL95727_evm1|Name=transcript:BL95727_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=2767bp|location=Sequence derived from alignment at Sc0000102:92100..94866- (Branchiostoma lanceolatum)
ATGTTTTCGCTCAAGTTGTCGTTGGACTATGACGTCATCATCAACTGTAC
AGGCGTTGGAGCGCACGATCTGATGGGCGATACCAAAGTCTTCCCGTCGA
GGGGACAAGTTATGAGGGTAAGACAGCATCGTGTATTACAAAGCAACTTT
TTCAGATGAAATCTTGGAAAAAAATATAGAATTGCTCCAAGATTATTTCA
TTATCCTTAGCAACATACGTTCGTTTCTTTAAAGAAAGGAAAACTTTTGA
TAAGCCTAAACACACCTTTGAGAGTTTGAGACTTTACAGCTACACTTTTA
CGCTACATGAAACAAGTTTTAGCTGGACATCCCTAACAACATGACATAAC
TGTGTGGGTGTAGCCATGAGTCGTTAGTACATTCTCCATTGGCGCGTCAC
CACTTTCTGTCTGTCTTCAACATTGGATCACAGCCAAACCAGATTTCCAA
TCCTGCAAGTATCCTGTTACACCATTTTCGCTTAACATCTTGACAGGCTG
CCATTCCGGCATATTCACATTAAACCAACTCGATCATAACTGTTACGCTA
TATCAAAATGTATTCTAGCCCTTATTGTATTGTATTAGTGATTAGGATGT
TATATCAAAATGTATGCTAGCCCTTATTGTATTGTATCATTAATTAGGAT
GTTAAGTTTTATTCTATACTTCTACTTTGTATTATGTTTACGAATTCTTG
CCATACTTTGTACCATGTACAATTGTCGTGCAATAAAGTTCTTCTTCATA
ACTGCAGACTCACACCAAGACATACAAACAAACAAACTGATTGCAATGCC
TCCATATTCACCTACAGGTGAAGGCTCCGTGGGTGAAACACTGGATGCTT
CTGGAGGGAAAACATCCCTACATCCCGGGGATTCCATATGTCGCCGGCGG
GTAGGTACAAACAAACAAACAAACAAACAAACAAACAAACAAACAAACAA
ACAAACAAACAAACAAACAAAGCAATATCTACTGATTGAAATTTGTTCTT
TTTTGTAGATATTGCATTCCCTTTCATAACATGTTGCTTTGATTATAATG
ACGTCACGTATCCGCAATGACACGTGTCAATAAAGGCACGTGTCTGTAAC
TCTCGCCAGTTTACGTTCGGCAGTGATCGGTCATTATTGATCCTGATCAA
GGCGACAGTGGTCGTCGAAAATTCGATCCGTGAATACCTTAATGTTGGAA
GAAAGTTTAGCATTGTATTATGTTGCTTTGATTTATCATTGTTCAAAGAG
AGTGTTTAAATCTAAGATCTAAGACAGTTGTTGATACTTTTTGAGCTTCT
GTGACATCCTTGTTTTGAATTTTGCTAACATTATTACGTCACAGATCTAC
CGCAACTCTGATTGGTGGAATTCGACAAGACGGAAGATGGGACGTGCACA
ATGACCCACGTGACACGAAGACGATTTGGAATGGCGTCACGGCTGCATTC
CCAGCACTCAAGGTATCAAATGTAGACAAAATGGTAAATAGAACAGGACG
TATAATTTGTGAATGGAATAAGAATCTCAATGGGGGTAAAGTGAACAAAT
AGATAGTTCCCAGCACTTAAGGTATAAATGCTTACAACTGGTTAATGGTT
CATAAAGTATACTTGGTTCAAGATTACTTGATTGCAAAAACAAATCAAAA
CTCAATGGGGGTTAAAACTAAAGAAGAATTAGAAATTGCGCAAATTAAAT
GATAGAATTGTTAGACTTGTTTTTATCGTTTGTATTGCCTGTCAACGAAA
TTAAGCTCATATCAAATTCTGTGTAGAAAATAAGTTCAACCGATTTTATT
GATTTATGCTGCTGGAATGAAAATAGGCGCCAACGTTTGCCATGTTGAGT
ATGCCTGGATTGTATACGTCAAATATGTTCCATTTTGCATAGGTTTCAAG
TGCTTTACACCTCTTTGTACACCTTGATATTGATACAATATAAATTTTAT
ATAGGATGCAGTAGTCCTAGAAGAGAAAACTGGTCTCAGGCCGATGAGGG
AAGAGATTAGGCTGGAAAGAGAGGAGAAAAAGGACCCCTTATCCGGAAGA
ACTGTTCAGGTTTGTACTATATGGATCGTATAATAGATTTCTCCCTCACC
TTGCAATGCATGGGTCTGTGCATATCTCCAATTCATAGCCCTGGGGCCAC
ACAGTTGTACAAGCAATGCAACAGGAGGCTAGTTCACTGGTAGAGGGGGT
GTTCAACTACAAGGGGGAGTCAACAAGAAACGCTTTTTTTATCATAGCAG
GTTCATTTTTGTATGAAATGAGTTTAAATTTGGTACAAATGTACAGGAAC
ATTACTTCTTGAGACTGAAGTATCTCAATGTGTAGTTCACATTTCTATGA
GCGACTGAGTTGACGTTAAGTAGACCACACCCTTGGAAGTTTGTCAGAAC
CAATGATACGTCAGACATGACCCGTTTACATCTCATTTCATACAGAAATG
AACATGCTATGGTACAAAAGGCGTTTTATTATGACATCCCCTCATACCAT
ACTCTTTCTCTTTCGTGCTGATTGGTAAGCAAAGAAAGCAGTATGTACCA
ATTTTAAAGTCTACGGTATGATTCCGGGAATATAACCCGCAAAGTGAATG
TTTATGTTGATGTACATTGATATCATCTAATATTTTAATGTCTTCAGGTT
ATCCACAACTACGGTCATGGCGCCAATGGCATCACGTGGTCCCTTGGATG
TGCCAAAGAAGTTGCGCTCATGGTGAAACAACTTCTACCTGAAAAGAGCA
TCAAATCCCGTCTCTGA

Coding sequence (CDS) from alignment at Sc0000102:92100..94866-

>transcript:BL95727_evm1 ID=transcript:BL95727_evm1|Name=transcript:BL95727_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=2715bp|location=Sequence derived from alignment at Sc0000102:92100..94866- (Branchiostoma lanceolatum)
ATGTTTTCGCTCAAGTTGTCGTTGGACTATGACGTCATCATCAACTGTAC
AGGCGTTGGAGCGCACGATCTGATGGGCGATACCAAAGTCTTCCCGTCGA
GGGGACAAGTTATGAGGGTGAAGGCTCCGTGGGTGAAACACTGGATGCTT
CTGGAGGGAAAACATCCCTACATCCCGGGGATTCCATATGTCGCCGGCGG
ATCTACCGCAACTCTGATTGGTGGAATTCGACAAGACGGAAGATGGGACG
TGCACAATGACCCACGTGACACGAAGACGATTTGGAATGGCGTCACGGCT
GCATTCCCAGCACTCAAGGATGCAGTAGTCCTAGAAGAGAAAACTGGTCT
CAGGCCGATGAGGGAAGAGATTAGGCTGGAAAGAGAGGAGAAAAAGGACC
CCTTATCCGGAAGAACTGTTCAGGTTATCCACAACTACGGTCATGGCGCC
AATGGCATCACGTGGTCCCTTGGATGTGCCAAAGAAGTTGCGCTCATGGT
GAAACAACTTCTACCTGAAAAGAGCATCAAATCCCGTCTCTGAATGTTTT
CGCTCAAGTTGTCGTTGGACTATGACGTCATCATCAACTGTACAGGCGTT
GGAGCGCACGATCTGATGGGCGATACCAAAGTCTTCCCGTCGAGGGGACA
AGTTATGAGGGTGAAGGCTCCGTGGGTGAAACACTGGATGCTTCTGGAGG
GAAAACATCCCTACATCCCGGGGATTCCATATGTCGCCGGCGGATCTACC
GCAACTCTGATTGGTGGAATTCGACAAGACGGAAGATGGGACGTGCACAA
TGACCCACGTGACACGAAGACGATTTGGAATGGCGTCACGGCTGCATTCC
CAGCACTCAAGGATGCAGTAGTCCTAGAAGAGAAAACTGGTCTCAGGCCG
ATGAGGGAAGAGATTAGGCTGGAAAGAGAGGAGAAAAAGGACCCCTTATC
CGGAAGAACTGTTCAGGTTATCCACAACTACGGTCATGGCGCCAATGGCA
TCACGTGGTCCCTTGGATGTGCCAAAGAAGTTGCGCTCATGGTGAAACAA
CTTCTACCTGAAAAGAGCATCAAATCCCGTCTCTGAATGTTTTCGCTCAA
GTTGTCGTTGGACTATGACGTCATCATCAACTGTACAGGCGTTGGAGCGC
ACGATCTGATGGGCGATACCAAAGTCTTCCCGTCGAGGGGACAAGTTATG
AGGGTGAAGGCTCCGTGGGTGAAACACTGGATGCTTCTGGAGGGAAAACA
TCCCTACATCCCGGGGATTCCATATGTCGCCGGCGGATCTACCGCAACTC
TGATTGGTGGAATTCGACAAGACGGAAGATGGGACGTGCACAATGACCCA
CGTGACACGAAGACGATTTGGAATGGCGTCACGGCTGCATTCCCAGCACT
CAAGGATGCAGTAGTCCTAGAAGAGAAAACTGGTCTCAGGCCGATGAGGG
AAGAGATTAGGCTGGAAAGAGAGGAGAAAAAGGACCCCTTATCCGGAAGA
ACTGTTCAGGTTATCCACAACTACGGTCATGGCGCCAATGGCATCACGTG
GTCCCTTGGATGTGCCAAAGAAGTTGCGCTCATGGTGAAACAACTTCTAC
CTGAAAAGAGCATCAAATCCCGTCTCTGAATGTTTTCGCTCAAGTTGTCG
TTGGACTATGACGTCATCATCAACTGTACAGGCGTTGGAGCGCACGATCT
GATGGGCGATACCAAAGTCTTCCCGTCGAGGGGACAAGTTATGAGGGTGA
AGGCTCCGTGGGTGAAACACTGGATGCTTCTGGAGGGAAAACATCCCTAC
ATCCCGGGGATTCCATATGTCGCCGGCGGATCTACCGCAACTCTGATTGG
TGGAATTCGACAAGACGGAAGATGGGACGTGCACAATGACCCACGTGACA
CGAAGACGATTTGGAATGGCGTCACGGCTGCATTCCCAGCACTCAAGGAT
GCAGTAGTCCTAGAAGAGAAAACTGGTCTCAGGCCGATGAGGGAAGAGAT
TAGGCTGGAAAGAGAGGAGAAAAAGGACCCCTTATCCGGAAGAACTGTTC
AGGTTATCCACAACTACGGTCATGGCGCCAATGGCATCACGTGGTCCCTT
GGATGTGCCAAAGAAGTTGCGCTCATGGTGAAACAACTTCTACCTGAAAA
GAGCATCAAATCCCGTCTCTGAATGTTTTCGCTCAAGTTGTCGTTGGACT
ATGACGTCATCATCAACTGTACAGGCGTTGGAGCGCACGATCTGATGGGC
GATACCAAAGTCTTCCCGTCGAGGGGACAAGTTATGAGGGTGAAGGCTCC
GTGGGTGAAACACTGGATGCTTCTGGAGGGAAAACATCCCTACATCCCGG
GGATTCCATATGTCGCCGGCGGATCTACCGCAACTCTGATTGGTGGAATT
CGACAAGACGGAAGATGGGACGTGCACAATGACCCACGTGACACGAAGAC
GATTTGGAATGGCGTCACGGCTGCATTCCCAGCACTCAAGGATGCAGTAG
TCCTAGAAGAGAAAACTGGTCTCAGGCCGATGAGGGAAGAGATTAGGCTG
GAAAGAGAGGAGAAAAAGGACCCCTTATCCGGAAGAACTGTTCAGGTTAT
CCACAACTACGGTCATGGCGCCAATGGCATCACGTGGTCCCTTGGATGTG
CCAAAGAAGTTGCGCTCATGGTGAAACAACTTCTACCTGAAAAGAGCATC
AAATCCCGTCTCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95727gene:BL95727Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95727_evm1transcript:BL95727_evm1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95727_evm1-E1BL95727_evm1-E1-1564476830-303219Branchiostoma lanceolatumexon
BL95727_evm1-E2BL95727_evm1-E2-1564476830-303217Branchiostoma lanceolatumexon
BL95727_evm1-E3BL95727_evm1-E3-1564476830-303215Branchiostoma lanceolatumexon
BL95727_evm1-E4BL95727_evm1-E4-1564476830-303213Branchiostoma lanceolatumexon
BL95727_evm1-E5BL95727_evm1-E5-1564476830-303211Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000102genomeSc0000102:92100..94866 -
Properties
Property NameValue
Transcript idBL95727_evm1
Biotypeprotein_coding