transcript:BL95710_evm1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95710_evm1
Unique Nametranscript:BL95710_evm1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95710_evm1

>transcript:BL95710_evm1-protein ID=transcript:BL95710_evm1-protein|Name=transcript:BL95710_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=208bp
MKIFTVGLLWACVLVTLVYLQGVSGRRGGGFRGGGFRGGGSRTSRTSRTR
SSSSVRRSTGGSGGSGYRPRFVVPPLLLASSRRRRSVSGSRDWYQQCRRC
TASYIYKDSRTSAYTTGTSTSPGAQEVNICREGTAACNKGKCSINYLWAN
NTITDFPDGVGGSNPAAGRISHQVEAVLICGTLRHAPTLQVTILALATAM
VLRMVGGT
Run BLAST on NCBI

mRNA from alignment at Sc0000100:747995..750866+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95710_evm1 ID=transcript:BL95710_evm1|Name=transcript:BL95710_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=2872bp|location=Sequence derived from alignment at Sc0000100:747995..750866+ (Branchiostoma lanceolatum)
TCGCACACGGGCACAAGTAGCGACGAGTCTACTATACCAGACATCAAGAA
GTTTGCCGAAAAAACATCAAGCACCCTCGGCAACAACTGAAGGTATGCTT
CGAATAAGCTGTCCTATGCTGGGGAAATACCCGAGGGTCATATGTACAGC
AATCTTACATGTTGTTTTTTAAAGGAATACTATACATGTATAAATTCATT
GTGGCAGACATGTTGACGATTCTCTGTGTAGAGAAACAGTTCGCTCTCAC
TGTACGTGTGTGTAAGTAGCGGTAATTGGTTGGTATTTGACAGAGTCACT
CTGTCTTTTTTATATGATCAAACAAACACATTGATCAAACTCGGTTATCC
TGAAGGAGACGACAGACTAGCAGTGTACTAGACATTACATTTAACATGTA
GAGTACATGTACTTCACAGTGTTTGTCACAGTTGAGATAGACTGTGACGT
CCTGTAGAACGTGTTTTCTTTCACGATTCACCGGTCCCACCCTAAAGTTT
TGGTCGATCGGCGGGCATACTTGGGAAAATATTAGTAATTGACTTGGGCG
CCTTTCTACAGCACTGAGGACGAAATCCCAACGACGCTCGACCGATCCTC
TCTGTTTAATACAACCATGAAGATCTTCACCGTAGGACTCCTCTGGGCAT
GCGTACTCGTCACCTTGGTGTACCTACAGGGGGTGTCCGGACGACGTGGT
GGTGGGTTCCGTGGGGGCGGATTCCGTGGAGGCGGATCCCGGACTAGCCG
GACTAGCCGGACTCGGAGCTCTTCGAGTGTCCGGAGATCTACCGGCGGAT
CTGGCGGCAGTGGTTACCGTCCCAGATTCGTAGTCCCACCGCTGCTACTG
TAAGTAGAGATCAGACGTTTCATGATTTAACACGTTGCGATTGAAAAGTT
GAAATTGTATTCAGCTGTTCTTACTTCCAAATGACAGGAATGACATGCTT
TGTTCAGTCTCTCTTTGTTTGTTTGTCCGTATGATTGTTTGTTTCTATGT
TTGTAGTTTGTTCGTTTTGGAACGCTTACGGCTGATCACTTTCTACACAC
TTTGACTTGATCACTTTGACACTATCATGATTATATTCTCCAATGGCACT
GTGCCGTAACTTTTATTCTTGTGCTTCGCCAGGGCGTCGAGCCGGCGCCG
GCGCTCTGTATCGGGCAGCCGCGACTGGTATCAGCAGTGTCGACGCTGCA
CCGCGTCCTACATCTACAAGGACTCCAGAACATCTGCCTACACGGTACGT
ACTGCACTGCTCAGAGATGGATAGAAGTCCTGCTCGGATTTTGTTCGATA
TCTTTCAGTAATATACAACTTCAATTTGTGACTTGGCATGGCACAGATCA
ATCTCCTGAAACCCATTGACAGTGGCGTCACAGCAACATTCACAAGAAAT
AAATCTTTCAGCATACGATCAAATCGAAAAATATAAATAAAGCGAAAACC
ATGGGATATGATTAGACACGTAAAGCGGCTGTCTACCTTCTACCACCTGT
ACATAAAATCGAATATCGACTTCCTCCCCCTTCAAAGGTTCAAAAGTATA
CTCGATACGGGATGTACCCATGTCTTACTTAATCAGTTGCAATTTATCGG
CTTAAGAAATTAAGTAAAGGCACGAAATTGTTAAAAGTGCCTAACACTAG
AGAGGTGAGTATGAGTTGTGTCTATATCCCCCAGACCGGGACCTCCACCT
CTCCCGGGGCACAGGAGGTCAATATCTGTCGCGAAGGGACAGCCGCCTGC
AACAAAGGCAAATGCTCCATCAACTACCTGTGGGCTAACAACACCATCAC
TGACTTCCCGGACGGGTTAGTAGATATCTCTCGATGACTGAACTGTATAT
GCTTACGTGCTAGTTTTATTGGTTTTAATGGTTAACTTCTCGTGCTCATT
CTGAACCTAAAGCTCATTCTGAACCTAAATTGACATATACCTCATGGTAT
TTTTCTTCTGATTTTTCATGTAACCTCTGCATTGCATCCTCCTGAAAGCA
GAGCCTCAGCCCCTATCGCTCGATTCGTTAGCTCGCTCGCGTAGGGGCCC
TGCTCATTGGCCCCGGTAGACACGGTTCTGGCGCCGTCGCCACCAAAACA
GCTTCAGCCAATCAGAGGGTTTGCTAAACCTCATCTAGAGCAAAAGTCCA
AAGGATGCTGGGAAGCTATCAACCAATCAGGTTCCGTCTCACATCGTTAC
TTTAGGTTCAGGACAAATTAACCACCAAATTGTGCCAAATAAGGATAGCT
CATTAATTATTCATGAGCAACTGTCAGTAACGTCGCCAGAACCGTGTCTA
CCGGGGCTAAAGAGCAGGGCCCCTACGCGAGCGAGCTAACGAATCGAGCG
ATAGGGGCTCTGCTTTCAGGAGGGTGCTGTATTGATGTTTATTTTTGTTG
CTTTGCGAGCCTTTGTTTTGTTCGTTTTGTTGCCATTTAGCGCATGAATG
GATTATCCTTGAATTTAATAATACTAAAATGCAGCTTTGAAAATCTCGAA
TGAGAACTATAAAAATGTATTTGTTAGATCTGCACAAAACACTCTTTTCA
GTCCTAAATATTCCATTGTTTGTGTTTACAGAGTAGGAGGATCGAACCCT
GCTGCGGGCCGCATATCACATCAAGTGGAGGCTGTGCTCATCTGCGGCAC
CTTGCGACATGCTCCGACACTGCAGGTCACCATACTGGCCCTTGCCACGG
CTATGGTTCTGCGCATGGTTGGAGGGACCTGAGAAGTAACCATTGAAAAC
GGCAGTCAGGCGCATTCATGATCATATTCAAGATTTTCTTTTATTTCTTT
TATTCAGACCTGAACACAATGGGTTTGATAAATGAAAGACCTTCATTGTA
CGTTTATGCTCTTACAAGCTAA

Coding sequence (CDS) from alignment at Sc0000100:747995..750866+

>transcript:BL95710_evm1 ID=transcript:BL95710_evm1|Name=transcript:BL95710_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=2508bp|location=Sequence derived from alignment at Sc0000100:747995..750866+ (Branchiostoma lanceolatum)
ATGAAGATCTTCACCGTAGGACTCCTCTGGGCATGCGTACTCGTCACCTT
GGTGTACCTACAGGGGGTGTCCGGACGACGTGGTGGTGGGTTCCGTGGGG
GCGGATTCCGTGGAGGCGGATCCCGGACTAGCCGGACTAGCCGGACTCGG
AGCTCTTCGAGTGTCCGGAGATCTACCGGCGGATCTGGCGGCAGTGGTTA
CCGTCCCAGATTCGTAGTCCCACCGCTGCTACTGGCGTCGAGCCGGCGCC
GGCGCTCTGTATCGGGCAGCCGCGACTGGTATCAGCAGTGTCGACGCTGC
ACCGCGTCCTACATCTACAAGGACTCCAGAACATCTGCCTACACGACCGG
GACCTCCACCTCTCCCGGGGCACAGGAGGTCAATATCTGTCGCGAAGGGA
CAGCCGCCTGCAACAAAGGCAAATGCTCCATCAACTACCTGTGGGCTAAC
AACACCATCACTGACTTCCCGGACGGAGTAGGAGGATCGAACCCTGCTGC
GGGCCGCATATCACATCAAGTGGAGGCTGTGCTCATCTGCGGCACCTTGC
GACATGCTCCGACACTGCAGGTCACCATACTGGCCCTTGCCACGGCTATG
GTTCTGCGCATGGTTGGAGGGACCTGAATGAAGATCTTCACCGTAGGACT
CCTCTGGGCATGCGTACTCGTCACCTTGGTGTACCTACAGGGGGTGTCCG
GACGACGTGGTGGTGGGTTCCGTGGGGGCGGATTCCGTGGAGGCGGATCC
CGGACTAGCCGGACTAGCCGGACTCGGAGCTCTTCGAGTGTCCGGAGATC
TACCGGCGGATCTGGCGGCAGTGGTTACCGTCCCAGATTCGTAGTCCCAC
CGCTGCTACTGGCGTCGAGCCGGCGCCGGCGCTCTGTATCGGGCAGCCGC
GACTGGTATCAGCAGTGTCGACGCTGCACCGCGTCCTACATCTACAAGGA
CTCCAGAACATCTGCCTACACGACCGGGACCTCCACCTCTCCCGGGGCAC
AGGAGGTCAATATCTGTCGCGAAGGGACAGCCGCCTGCAACAAAGGCAAA
TGCTCCATCAACTACCTGTGGGCTAACAACACCATCACTGACTTCCCGGA
CGGAGTAGGAGGATCGAACCCTGCTGCGGGCCGCATATCACATCAAGTGG
AGGCTGTGCTCATCTGCGGCACCTTGCGACATGCTCCGACACTGCAGGTC
ACCATACTGGCCCTTGCCACGGCTATGGTTCTGCGCATGGTTGGAGGGAC
CTGAATGAAGATCTTCACCGTAGGACTCCTCTGGGCATGCGTACTCGTCA
CCTTGGTGTACCTACAGGGGGTGTCCGGACGACGTGGTGGTGGGTTCCGT
GGGGGCGGATTCCGTGGAGGCGGATCCCGGACTAGCCGGACTAGCCGGAC
TCGGAGCTCTTCGAGTGTCCGGAGATCTACCGGCGGATCTGGCGGCAGTG
GTTACCGTCCCAGATTCGTAGTCCCACCGCTGCTACTGGCGTCGAGCCGG
CGCCGGCGCTCTGTATCGGGCAGCCGCGACTGGTATCAGCAGTGTCGACG
CTGCACCGCGTCCTACATCTACAAGGACTCCAGAACATCTGCCTACACGA
CCGGGACCTCCACCTCTCCCGGGGCACAGGAGGTCAATATCTGTCGCGAA
GGGACAGCCGCCTGCAACAAAGGCAAATGCTCCATCAACTACCTGTGGGC
TAACAACACCATCACTGACTTCCCGGACGGAGTAGGAGGATCGAACCCTG
CTGCGGGCCGCATATCACATCAAGTGGAGGCTGTGCTCATCTGCGGCACC
TTGCGACATGCTCCGACACTGCAGGTCACCATACTGGCCCTTGCCACGGC
TATGGTTCTGCGCATGGTTGGAGGGACCTGAATGAAGATCTTCACCGTAG
GACTCCTCTGGGCATGCGTACTCGTCACCTTGGTGTACCTACAGGGGGTG
TCCGGACGACGTGGTGGTGGGTTCCGTGGGGGCGGATTCCGTGGAGGCGG
ATCCCGGACTAGCCGGACTAGCCGGACTCGGAGCTCTTCGAGTGTCCGGA
GATCTACCGGCGGATCTGGCGGCAGTGGTTACCGTCCCAGATTCGTAGTC
CCACCGCTGCTACTGGCGTCGAGCCGGCGCCGGCGCTCTGTATCGGGCAG
CCGCGACTGGTATCAGCAGTGTCGACGCTGCACCGCGTCCTACATCTACA
AGGACTCCAGAACATCTGCCTACACGACCGGGACCTCCACCTCTCCCGGG
GCACAGGAGGTCAATATCTGTCGCGAAGGGACAGCCGCCTGCAACAAAGG
CAAATGCTCCATCAACTACCTGTGGGCTAACAACACCATCACTGACTTCC
CGGACGGAGTAGGAGGATCGAACCCTGCTGCGGGCCGCATATCACATCAA
GTGGAGGCTGTGCTCATCTGCGGCACCTTGCGACATGCTCCGACACTGCA
GGTCACCATACTGGCCCTTGCCACGGCTATGGTTCTGCGCATGGTTGGAG
GGACCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95710gene:BL95710Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95710_evm1transcript:BL95710_evm1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95710_evm1-E1BL95710_evm1-E1-1564476830-301393Branchiostoma lanceolatumexon
BL95710_evm1-E2BL95710_evm1-E2-1564476830-301396Branchiostoma lanceolatumexon
BL95710_evm1-E3BL95710_evm1-E3-1564476830-301398Branchiostoma lanceolatumexon
BL95710_evm1-E4BL95710_evm1-E4-1564476830-301400Branchiostoma lanceolatumexon
BL95710_evm1-E5BL95710_evm1-E5-1564476830-301403Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000100genomeSc0000100:747995..750866 +
Properties
Property NameValue
Transcript idBL95710_evm1
Biotypeprotein_coding