|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL95618_evm1 >transcript:BL95618_evm1-protein ID=transcript:BL95618_evm1-protein|Name=transcript:BL95618_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=277bp
MSTPNYYKERGITFPGDIVPRSNLELVKNFDIRDDDIMIITYPKTGTWWT
HQIVKQILASEGVKDETYLTDVANLIEFSIPQKGGALAELFKTAPSPRVL
ATHVPVEFLPSGLLGSKAKIVVVMRNPKDTAVSSFHFYKKVPQLKTPESW
ETFLEEFLAGDCPWGPFYDHVLGYWKLKDSHNILFLKYEDMKKDLPAEVK
KLATFLGRPLSEEAVQAVVGATQFDSMKKNVGDKHGLWTRKGVIGDWKNS
FSDEQSRAFDDQYRERLSNTGLEFEFE Run BLAST on NCBI mRNA from alignment at Sc0000074:981833..986233+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL95618_evm1 ID=transcript:BL95618_evm1|Name=transcript:BL95618_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=4401bp|location=Sequence derived from alignment at Sc0000074:981833..986233+ (Branchiostoma lanceolatum)
ATGTCGACACCGAACTACTACAAGGAGCGAGGGATCACGTTTCCTGGTGA
CATTGTGCCACGTTCCAACCTGGAACTCGTGAAAAACTTTGATATCAGAG
ACGACGACATAATGATTATCACCTACCCCAAGACTGGTGAGTATTGGTAC
GCCGATAAGATAATAAATTTAGCCACAATACTTTTGTCTAGCTAGTCATC
TCTAGTTGTGTGGCGAAACGGCAGGGTTTTCGGCCGGCCCAGAACCCAGG
ATCACTCAGGGGTCCCGGGTTCGAATCTCCTAACGCCACCGATCTTGTGC
CCTTGGAAAATAGCACTTTGGACGACTTTCCTCACTCCACCCAAGTGTAA
AAATGGGTATATTATGTGTGTGGGTCACCACACCAGCAATAGCTGCCTGT
GTCCTACGTAGCCTGCGTACCAGCCTCCGTAGTGACCGCTGGCTCAAAAA
AAAATTCGCTTGCTAACCACGGTGGTACGCAGGCTATGTCCCACGTGCAT
TGCACAGCCGCACTGTATCGAGATATAACAGAATTTCAGAAAATGATCGT
CCTGATGAAATGATATGTCTTATGGTTCCAGGCACTTGGTGGACCCATCA
AATAGTGAAACAAATCCTGGCGTCAGAGGGAGTTAAGGATGAGACGTACT
TGACAGACGTTGCCAACCTTATCGAGTTCTCCATACCTCAAAAGGGGGGC
GCTCTGGCGGAATTGTTCAAAACTGCACCGTCCCCTCGGGTACTGGCAAC
GCACGTCCCTGTGGAATTCCTCCCGTCCGGTTTGCTCGGTTCGAAGGCTA
AGGTAGGGGACGCATTGAGTAGCAGATAGTGTACAAAATTAGAATTTGGA
GTTTTTTGTTCAGCGAATAATTAAATTAAAGACCGCAAAATCCAATGAAT
TTATCTCGTTCCCTAGATTTTGTAGAAGTTTGTAAAAGTTTTGTAGAAAT
TTGTTAAAGTTTTGTAGAAATTTGCAAAAGTTTTGTAGAAGTTTGTAAAA
GTTTTGTAAAAATTTGTAAAAGTTTTGTAGAAATTTGTAACAGCTTTGTA
GAAATTTGTAAAAGTTTTGTAGAAATTTGTAAAGTTTTGTAGAAATCTGT
AAAAGTTTTGCAGAAATTTATAAAGTTTTGTAGAAATTTGTAAATATGCA
TTACCATGTCCATCCTCTTATGCCCGCCACTTCTGTATATCAAGTAATGA
CCCTGGCATACCGTCGTGCTTCTCGCGCTATCGGTGTCTCAGCGCTGACC
GCTGCTGTCAGCCAATCAGATACTTCCCCTACTGTTGTTGGAGGGAAAGA
TAACAGCCAATCACCTTGCCTCTTTACCGTAGGCGGCGACGTGATTGGCT
GGGGACGGCTTACCAGCGCTAACGCAGCGAGAAGGACTGATCTTTGGTCG
GTACGCCAGGCAATGTGATTGGCTGATATTGTTGTTGAAAGAAAAGTTAC
AAGCCAATCAGCTTGCCTCTTGGCCGTAGGTGGCGACGTGATTGGCTGGT
GATAGACTGATTCAAGGCGGGTGTACCAGGGCCGTTGCTTGATGCATACA
CAAGCGGTGGGCCTTGCGTGACAAGATTCATTATGTCATATCTAATTTTA
TTTCTTTCCATTTTTCATATCAGATAGTTGTGGTGATGAGGAATCCCAAG
GACACTGCAGTCTCGTCCTTCCACTTCTACAAGAAAGTTCCACAATTGAA
GACCCCCGAGTCATGGGAGACGTTCCTTGAGGAGTTCCTTGCCGGTGACT
GTAGGTATCCAATATGATGAATCTGAAGACATATTTCTTCAAATCCATTT
CGCAATTAAGACAAATATTCAGATGTAAGAGTTGGGTCATACAATATTAG
GGACAGTATGTGTTTTGACCACGAAATAGCATTAACAACATTAAGCTTTT
TTTTAAATTTGTCATCAAAATAGGTAAGGTTAACATGGGGGTTCTGTCGA
AAAGTATCTCTACATTGTATGTAATTAGTATCAGATTAGAAAATCAAGAC
CAAAACGTTTTTCCATGCGTTTTCACAATTAGGTCCGTGGGGCCCTTTCT
ACGACCACGTCCTGGGATACTGGAAACTTAAGGACAGCCACAACATCCTC
TTCCTTAAGTATGAAGATATGAAAAAGGTATTTTGTCATTTCGCCGTAAA
AAGGCTTAGTAGGTAAATCAGTCATCATCAACTGAGTATGTTACTTTATC
AAGTAACCAGCACGACTGTACTACGTGCAATACTAATACTGCTGGATATT
TAAAAAAAATGGACGACTAGAAAGTCTTAGTAGTTATGAGGATTCAAGTG
ACTTTTTACCCGGGGACTACTACTTTTAATCTTGTTCTTTTTTTTCTTCT
TCTCTTTAACTTCGCCAAGAATGCCGTTTATATTCTCTGGTGCGTGCACT
TGTGTCTGTGCGTGAGCACGATAAATCGAGAAGGCCTGGGTGGATTCTCT
TTATATTTTGAATATGGTTATGATTTTTGGGCCCCCTATCGGCTTGTTAT
GGTGCTGCTGTAGAACTTCCGGTATTTATATGCTATGGTTTTGATAAGGT
GGACAAGCTATGGTCACGATTTTTAGGTGGAAGACAGCGCTTGTGCATGG
GAAGAAGTGACATAGATTTGAGCCCCTAGCAGGTTATTNCCTATCAGGTT
ATTATGGAACTGCAGAGGCGTTTTTGTTACAATCTGTGAAAGATGATAAC
TCAAGAAGGGGTCAACGGATCGTCATGATTTTCGATATGTAGGATGACAA
TAATGTAAATTTGCACGATTAATGAGGAAAATCTATAAATCCAATGATCT
ATTATAGGACTATCAAACATGTGACATATGTAATTCTGAGAGAGAGGAAC
ATCGACGGATATGGATTATGCAAATGAAGACAGTATGATAGTATAGGAAA
GAAGTATGATTCTAAACACGGTAAGTGATGGAAATTTCATACTTGCAGTT
AACGTTTGGAAGCATGCAAATCAGGACCCTATTTGCACAAATGACAAAGA
AATACTACAATAGCCTTCTTTGATTTGATACTTATTTGGGTGGAGAGGGT
GATCAACTAATACAATTTATGCAAATCACGACCTTATTTGCATAATAGTA
CGTCAATTGTATGTTAAAGGCTAACATCATTTGGCGAAGGTATGAGGTAG
TGGAACGCTTCTTGACGACTGCTCAAATACCACCCAGGTATAAAAAAACG
GGTATATTATGGTCGCAACACCAGCAATAGCTGCCTGTACCCCACGTGTA
TTGAACTGTTGCAATTCTAATAAAATAAGATAAAATAAAATTTCCACAGG
ACCTGCCGGCGGAAGTGAAGAAGCTCGCCACCTTCCTGGGAAGGCCGTTG
AGTGAAGAAGCGGTGCAGGCTGTGGTCGGTGCAACTCAGTTCGACTCCAT
GAAAAAAAATGTGGGAGACAAACACGGTCTTTGGACAAGGAAGGGTATGT
GTCAAACTCTTCATCGAAGCATAGAGAAATACTCGAATGTTGTCAAAAGA
CATTGATATGCCGTTATCTTGAAATTTCTTCGAATTAAATAATTCATTTA
CATTTTCGTAAATACGATTACAATGAACGTCTAACAAATTTGATTTGCTC
TCTGTCAGCCATCACTATACGTAAGGAGACTAACAAATCTAAATAAATCA
ACATATTAAACGTATATGGATATAACTTGTATTATCACGCGTACGGTAAC
TAGTGGAAATAGTGATCTTAAACTTAAAGGCAACCAAAGCAATATTAGGG
CCCAAAAATATATTTAGAAAATATGCAAATGAGGACCTGATTTGCATAAT
AAATTAGAAAGTACTATATTTCTACACTGGTAAATGACGGCAGTTGGAAG
TTACGTGAATGTGAACATCGTTGAATATAAATCATCCAAATTAGATGATA
AATGCTATAATAACCTTCTTTGTTAAAGGCAACCAAAGCAATATTAGGGA
CCAAAAAAGGAAATGAAAAAATGCTGAAATCTTTATGGTAGTGACATTTA
CTAGATCTACCACTATTTAGCACATTGGTATAATAACTAACTTACTTTAT
ACTTTCAAAACGTCGCAAAAACGAGCCGTACAATGATCCCCTTAGTTTCG
CGAGCCTACAAAAAAACCGGCGACGATTTTAGGGCGTTCTCACATCACAC
CGACGTCTAACATATTTTTGCATCATGCATGAAGCTATACATTGTGATAG
TGTTGTTTAAACTATTCATGTTCAGAAATGACTACATAAATTGACTTTCA
AAATCCGATTTTTGGGCTTTCTCTTGTTTTTTTTTGTCCAGGAGTCATCG
GAGATTGGAAAAACTCCTTCAGTGACGAACAGAGTCGAGCTTTTGATGAC
CAGTACCGCGAGAGGCTGTCCAACACCGGGTTGGAGTTTGAATTCGAGTG
A Coding sequence (CDS) from alignment at Sc0000074:981833..986233+ >transcript:BL95618_evm1 ID=transcript:BL95618_evm1|Name=transcript:BL95618_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=5004bp|location=Sequence derived from alignment at Sc0000074:981833..986233+ (Branchiostoma lanceolatum)
ATGTCGACACCGAACTACTACAAGGAGCGAGGGATCACGTTTCCTGGTGA
CATTGTGCCACGTTCCAACCTGGAACTCGTGAAAAACTTTGATATCAGAG
ACGACGACATAATGATTATCACCTACCCCAAGACTGGCACTTGGTGGACC
CATCAAATAGTGAAACAAATCCTGGCGTCAGAGGGAGTTAAGGATGAGAC
GTACTTGACAGACGTTGCCAACCTTATCGAGTTCTCCATACCTCAAAAGG
GGGGCGCTCTGGCGGAATTGTTCAAAACTGCACCGTCCCCTCGGGTACTG
GCAACGCACGTCCCTGTGGAATTCCTCCCGTCCGGTTTGCTCGGTTCGAA
GGCTAAGATAGTTGTGGTGATGAGGAATCCCAAGGACACTGCAGTCTCGT
CCTTCCACTTCTACAAGAAAGTTCCACAATTGAAGACCCCCGAGTCATGG
GAGACGTTCCTTGAGGAGTTCCTTGCCGGTGACTGTCCGTGGGGCCCTTT
CTACGACCACGTCCTGGGATACTGGAAACTTAAGGACAGCCACAACATCC
TCTTCCTTAAGTATGAAGATATGAAAAAGGACCTGCCGGCGGAAGTGAAG
AAGCTCGCCACCTTCCTGGGAAGGCCGTTGAGTGAAGAAGCGGTGCAGGC
TGTGGTCGGTGCAACTCAGTTCGACTCCATGAAAAAAAATGTGGGAGACA
AACACGGTCTTTGGACAAGGAAGGGAGTCATCGGAGATTGGAAAAACTCC
TTCAGTGACGAACAGAGTCGAGCTTTTGATGACCAGTACCGCGAGAGGCT
GTCCAACACCGGGTTGGAGTTTGAATTCGAGTGAATGTCGACACCGAACT
ACTACAAGGAGCGAGGGATCACGTTTCCTGGTGACATTGTGCCACGTTCC
AACCTGGAACTCGTGAAAAACTTTGATATCAGAGACGACGACATAATGAT
TATCACCTACCCCAAGACTGGCACTTGGTGGACCCATCAAATAGTGAAAC
AAATCCTGGCGTCAGAGGGAGTTAAGGATGAGACGTACTTGACAGACGTT
GCCAACCTTATCGAGTTCTCCATACCTCAAAAGGGGGGCGCTCTGGCGGA
ATTGTTCAAAACTGCACCGTCCCCTCGGGTACTGGCAACGCACGTCCCTG
TGGAATTCCTCCCGTCCGGTTTGCTCGGTTCGAAGGCTAAGATAGTTGTG
GTGATGAGGAATCCCAAGGACACTGCAGTCTCGTCCTTCCACTTCTACAA
GAAAGTTCCACAATTGAAGACCCCCGAGTCATGGGAGACGTTCCTTGAGG
AGTTCCTTGCCGGTGACTGTCCGTGGGGCCCTTTCTACGACCACGTCCTG
GGATACTGGAAACTTAAGGACAGCCACAACATCCTCTTCCTTAAGTATGA
AGATATGAAAAAGGACCTGCCGGCGGAAGTGAAGAAGCTCGCCACCTTCC
TGGGAAGGCCGTTGAGTGAAGAAGCGGTGCAGGCTGTGGTCGGTGCAACT
CAGTTCGACTCCATGAAAAAAAATGTGGGAGACAAACACGGTCTTTGGAC
AAGGAAGGGAGTCATCGGAGATTGGAAAAACTCCTTCAGTGACGAACAGA
GTCGAGCTTTTGATGACCAGTACCGCGAGAGGCTGTCCAACACCGGGTTG
GAGTTTGAATTCGAGTGAATGTCGACACCGAACTACTACAAGGAGCGAGG
GATCACGTTTCCTGGTGACATTGTGCCACGTTCCAACCTGGAACTCGTGA
AAAACTTTGATATCAGAGACGACGACATAATGATTATCACCTACCCCAAG
ACTGGCACTTGGTGGACCCATCAAATAGTGAAACAAATCCTGGCGTCAGA
GGGAGTTAAGGATGAGACGTACTTGACAGACGTTGCCAACCTTATCGAGT
TCTCCATACCTCAAAAGGGGGGCGCTCTGGCGGAATTGTTCAAAACTGCA
CCGTCCCCTCGGGTACTGGCAACGCACGTCCCTGTGGAATTCCTCCCGTC
CGGTTTGCTCGGTTCGAAGGCTAAGATAGTTGTGGTGATGAGGAATCCCA
AGGACACTGCAGTCTCGTCCTTCCACTTCTACAAGAAAGTTCCACAATTG
AAGACCCCCGAGTCATGGGAGACGTTCCTTGAGGAGTTCCTTGCCGGTGA
CTGTCCGTGGGGCCCTTTCTACGACCACGTCCTGGGATACTGGAAACTTA
AGGACAGCCACAACATCCTCTTCCTTAAGTATGAAGATATGAAAAAGGAC
CTGCCGGCGGAAGTGAAGAAGCTCGCCACCTTCCTGGGAAGGCCGTTGAG
TGAAGAAGCGGTGCAGGCTGTGGTCGGTGCAACTCAGTTCGACTCCATGA
AAAAAAATGTGGGAGACAAACACGGTCTTTGGACAAGGAAGGGAGTCATC
GGAGATTGGAAAAACTCCTTCAGTGACGAACAGAGTCGAGCTTTTGATGA
CCAGTACCGCGAGAGGCTGTCCAACACCGGGTTGGAGTTTGAATTCGAGT
GAATGTCGACACCGAACTACTACAAGGAGCGAGGGATCACGTTTCCTGGT
GACATTGTGCCACGTTCCAACCTGGAACTCGTGAAAAACTTTGATATCAG
AGACGACGACATAATGATTATCACCTACCCCAAGACTGGCACTTGGTGGA
CCCATCAAATAGTGAAACAAATCCTGGCGTCAGAGGGAGTTAAGGATGAG
ACGTACTTGACAGACGTTGCCAACCTTATCGAGTTCTCCATACCTCAAAA
GGGGGGCGCTCTGGCGGAATTGTTCAAAACTGCACCGTCCCCTCGGGTAC
TGGCAACGCACGTCCCTGTGGAATTCCTCCCGTCCGGTTTGCTCGGTTCG
AAGGCTAAGATAGTTGTGGTGATGAGGAATCCCAAGGACACTGCAGTCTC
GTCCTTCCACTTCTACAAGAAAGTTCCACAATTGAAGACCCCCGAGTCAT
GGGAGACGTTCCTTGAGGAGTTCCTTGCCGGTGACTGTCCGTGGGGCCCT
TTCTACGACCACGTCCTGGGATACTGGAAACTTAAGGACAGCCACAACAT
CCTCTTCCTTAAGTATGAAGATATGAAAAAGGACCTGCCGGCGGAAGTGA
AGAAGCTCGCCACCTTCCTGGGAAGGCCGTTGAGTGAAGAAGCGGTGCAG
GCTGTGGTCGGTGCAACTCAGTTCGACTCCATGAAAAAAAATGTGGGAGA
CAAACACGGTCTTTGGACAAGGAAGGGAGTCATCGGAGATTGGAAAAACT
CCTTCAGTGACGAACAGAGTCGAGCTTTTGATGACCAGTACCGCGAGAGG
CTGTCCAACACCGGGTTGGAGTTTGAATTCGAGTGAATGTCGACACCGAA
CTACTACAAGGAGCGAGGGATCACGTTTCCTGGTGACATTGTGCCACGTT
CCAACCTGGAACTCGTGAAAAACTTTGATATCAGAGACGACGACATAATG
ATTATCACCTACCCCAAGACTGGCACTTGGTGGACCCATCAAATAGTGAA
ACAAATCCTGGCGTCAGAGGGAGTTAAGGATGAGACGTACTTGACAGACG
TTGCCAACCTTATCGAGTTCTCCATACCTCAAAAGGGGGGCGCTCTGGCG
GAATTGTTCAAAACTGCACCGTCCCCTCGGGTACTGGCAACGCACGTCCC
TGTGGAATTCCTCCCGTCCGGTTTGCTCGGTTCGAAGGCTAAGATAGTTG
TGGTGATGAGGAATCCCAAGGACACTGCAGTCTCGTCCTTCCACTTCTAC
AAGAAAGTTCCACAATTGAAGACCCCCGAGTCATGGGAGACGTTCCTTGA
GGAGTTCCTTGCCGGTGACTGTCCGTGGGGCCCTTTCTACGACCACGTCC
TGGGATACTGGAAACTTAAGGACAGCCACAACATCCTCTTCCTTAAGTAT
GAAGATATGAAAAAGGACCTGCCGGCGGAAGTGAAGAAGCTCGCCACCTT
CCTGGGAAGGCCGTTGAGTGAAGAAGCGGTGCAGGCTGTGGTCGGTGCAA
CTCAGTTCGACTCCATGAAAAAAAATGTGGGAGACAAACACGGTCTTTGG
ACAAGGAAGGGAGTCATCGGAGATTGGAAAAACTCCTTCAGTGACGAACA
GAGTCGAGCTTTTGATGACCAGTACCGCGAGAGGCTGTCCAACACCGGGT
TGGAGTTTGAATTCGAGTGAATGTCGACACCGAACTACTACAAGGAGCGA
GGGATCACGTTTCCTGGTGACATTGTGCCACGTTCCAACCTGGAACTCGT
GAAAAACTTTGATATCAGAGACGACGACATAATGATTATCACCTACCCCA
AGACTGGCACTTGGTGGACCCATCAAATAGTGAAACAAATCCTGGCGTCA
GAGGGAGTTAAGGATGAGACGTACTTGACAGACGTTGCCAACCTTATCGA
GTTCTCCATACCTCAAAAGGGGGGCGCTCTGGCGGAATTGTTCAAAACTG
CACCGTCCCCTCGGGTACTGGCAACGCACGTCCCTGTGGAATTCCTCCCG
TCCGGTTTGCTCGGTTCGAAGGCTAAGATAGTTGTGGTGATGAGGAATCC
CAAGGACACTGCAGTCTCGTCCTTCCACTTCTACAAGAAAGTTCCACAAT
TGAAGACCCCCGAGTCATGGGAGACGTTCCTTGAGGAGTTCCTTGCCGGT
GACTGTCCGTGGGGCCCTTTCTACGACCACGTCCTGGGATACTGGAAACT
TAAGGACAGCCACAACATCCTCTTCCTTAAGTATGAAGATATGAAAAAGG
ACCTGCCGGCGGAAGTGAAGAAGCTCGCCACCTTCCTGGGAAGGCCGTTG
AGTGAAGAAGCGGTGCAGGCTGTGGTCGGTGCAACTCAGTTCGACTCCAT
GAAAAAAAATGTGGGAGACAAACACGGTCTTTGGACAAGGAAGGGAGTCA
TCGGAGATTGGAAAAACTCCTTCAGTGACGAACAGAGTCGAGCTTTTGAT
GACCAGTACCGCGAGAGGCTGTCCAACACCGGGTTGGAGTTTGAATTCGA
GTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000074 | genome | Sc0000074:981833..986233 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL95618_evm1 |
| Biotype | protein_coding |
|
